Wall clock time and date at job start Fri Apr 10 2020 17:15:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31561 * 1 3 3 Si 1.86806 * 119.99917 * 2 1 4 4 H 1.48492 * 109.47108 * 269.99832 * 3 2 1 5 5 H 1.48499 * 109.47216 * 30.00079 * 3 2 1 6 6 H 1.48511 * 109.46890 * 150.00084 * 3 2 1 7 7 C 1.38641 * 120.00358 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99566 * 359.97438 * 7 2 1 9 9 O 1.34803 * 120.00564 * 180.02562 * 7 2 1 10 10 C 1.35648 * 117.00554 * 185.08324 * 9 7 2 11 11 C 1.38744 * 120.13598 * 354.39565 * 10 9 7 12 12 C 1.38116 * 120.05858 * 179.97438 * 11 10 9 13 13 C 1.38480 * 120.34891 * 359.97438 * 12 11 10 14 14 C 1.37968 * 120.28538 * 0.02562 * 13 12 11 15 15 C 1.39421 * 119.93392 * 359.97438 * 14 13 12 16 16 C 1.48032 * 120.17339 * 180.02562 * 15 14 13 17 17 C 1.38746 * 120.26922 * 64.97208 * 16 15 14 18 18 C 1.38624 * 120.39430 * 180.02562 * 17 16 15 19 19 C 1.37753 * 120.74612 * 0.03176 * 18 17 16 20 20 C 1.39264 * 120.14629 * 359.97438 * 19 18 17 21 21 N 1.37184 * 133.65269 * 180.02562 * 20 19 18 22 22 H 0.96995 * 125.96887 * 359.95053 * 21 20 19 23 23 N 1.40034 * 108.05292 * 179.18702 * 21 20 19 24 24 C 1.30207 * 109.71696 * 0.71589 * 23 21 20 25 25 C 1.40664 * 119.77446 * 359.68385 * 20 19 18 26 26 H 0.97002 * 120.00147 * 359.97438 * 1 2 3 27 27 H 1.08003 * 119.97511 * 359.96229 * 11 10 9 28 28 H 1.08001 * 119.82501 * 179.72491 * 12 11 10 29 29 H 1.07999 * 119.85778 * 179.97438 * 13 12 11 30 30 H 1.07998 * 120.03468 * 180.02562 * 14 13 12 31 31 H 1.08001 * 119.80693 * 359.97438 * 17 16 15 32 32 H 1.07995 * 119.62257 * 179.97438 * 18 17 16 33 33 H 1.08004 * 119.92334 * 179.97438 * 19 18 17 34 34 H 1.08003 * 125.65900 * 179.43233 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3156 0.0000 0.0000 3 14 2.2496 1.6178 0.0000 4 1 2.4971 2.0464 -1.4000 5 1 1.4471 2.6527 0.7000 6 1 3.5473 1.4402 0.7001 7 6 2.0089 -1.2006 -0.0005 8 1 1.4689 -2.1359 -0.0005 9 8 3.3569 -1.2007 0.0000 10 6 3.9729 -2.4044 -0.1077 11 6 3.2251 -3.5731 -0.0951 12 6 3.8539 -4.7979 -0.2053 13 6 5.2313 -4.8686 -0.3294 14 6 5.9888 -3.7155 -0.3436 15 6 5.3663 -2.4729 -0.2331 16 6 6.1738 -1.2323 -0.2483 17 6 6.8830 -0.8733 -1.3855 18 6 7.6405 0.2876 -1.4024 19 6 7.7037 1.1034 -0.2942 20 6 7.0026 0.7687 0.8616 21 7 6.8683 1.3597 2.0923 22 1 7.2861 2.1881 2.3751 23 7 6.0089 0.5670 2.8629 24 6 5.6322 -0.4712 2.1732 25 6 6.2238 -0.4023 0.8917 26 1 -0.4850 0.8401 0.0004 27 1 2.1505 -3.5251 0.0013 28 1 3.2686 -5.7054 -0.1906 29 1 5.7148 -5.8306 -0.4147 30 1 7.0627 -3.7754 -0.4410 31 1 6.8454 -1.5024 -2.2625 32 1 8.1879 0.5549 -2.2941 33 1 8.2983 2.0046 -0.3219 34 1 4.9758 -1.2546 2.5222 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001240314110.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:15:48 Heat of formation + Delta-G solvation = 88.832376 kcal Electronic energy + Delta-G solvation = -21195.347987 eV Core-core repulsion = 18060.320142 eV Total energy + Delta-G solvation = -3135.027845 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 280.095 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -41.08584 -39.22268 -36.97476 -36.28954 -32.85425 -32.36774 -30.63854 -29.49184 -29.13751 -27.99851 -25.28478 -23.28631 -22.29474 -21.37334 -21.23538 -20.57604 -17.96551 -17.75530 -16.75884 -16.39047 -15.18082 -14.91684 -14.72774 -14.52016 -14.37416 -13.99561 -13.76312 -13.66396 -13.25697 -12.89592 -12.41586 -12.22812 -11.75507 -11.51821 -11.37312 -11.34707 -10.83073 -10.81081 -10.66809 -10.55828 -10.17841 -9.87786 -9.43581 -8.91103 -8.41418 -8.18624 -7.67156 -7.30864 -6.46039 -4.11724 1.11126 1.77391 2.06033 2.23350 2.91876 3.02380 3.21592 3.25521 3.44070 4.07574 4.22780 4.41791 4.75754 4.86943 5.01909 5.06193 5.23087 5.29930 5.45912 5.54750 5.58058 5.71250 5.89306 6.04115 6.07542 6.16839 6.25817 6.47760 6.60250 6.63895 6.81317 6.83888 7.00252 7.09479 7.21545 7.24746 7.54713 7.56735 7.74068 7.90398 7.98401 8.89905 9.51745 10.61050 Molecular weight = 280.10amu Principal moments of inertia in cm(-1) A = 0.011730 B = 0.010048 C = 0.006565 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2386.540788 B = 2786.025925 C = 4264.237454 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.875 5.875 2 C 0.070 3.930 3 Si 0.897 3.103 4 H -0.274 1.274 5 H -0.284 1.284 6 H -0.255 1.255 7 C -0.389 4.389 8 H 0.108 0.892 9 O -0.201 6.201 10 C 0.175 3.825 11 C -0.222 4.222 12 C -0.068 4.068 13 C -0.208 4.208 14 C -0.056 4.056 15 C -0.144 4.144 16 C 0.077 3.923 17 C -0.161 4.161 18 C -0.065 4.065 19 C -0.162 4.162 20 C 0.127 3.873 21 N -0.517 5.517 22 H 0.436 0.564 23 N -0.265 5.265 24 C 0.103 3.897 25 C -0.156 4.156 26 H 0.280 0.720 27 H 0.135 0.865 28 H 0.111 0.889 29 H 0.110 0.890 30 H 0.115 0.885 31 H 0.126 0.874 32 H 0.126 0.874 33 H 0.119 0.881 34 H 0.188 0.812 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.930 -1.709 -0.799 14.057 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.513 5.513 2 C -0.134 4.134 3 Si 0.722 3.278 4 H -0.200 1.200 5 H -0.210 1.210 6 H -0.178 1.178 7 C -0.464 4.464 8 H 0.125 0.875 9 O -0.105 6.105 10 C 0.122 3.878 11 C -0.241 4.241 12 C -0.087 4.087 13 C -0.227 4.227 14 C -0.074 4.074 15 C -0.145 4.145 16 C 0.074 3.926 17 C -0.181 4.181 18 C -0.086 4.086 19 C -0.184 4.184 20 C 0.010 3.990 21 N -0.231 5.231 22 H 0.280 0.720 23 N -0.079 5.079 24 C -0.093 4.093 25 C -0.163 4.163 26 H 0.090 0.910 27 H 0.153 0.847 28 H 0.129 0.871 29 H 0.128 0.872 30 H 0.133 0.867 31 H 0.144 0.856 32 H 0.144 0.856 33 H 0.137 0.863 34 H 0.205 0.795 Dipole moment (debyes) X Y Z Total from point charges 13.693 -0.698 0.404 13.716 hybrid contribution 0.200 0.785 -0.673 1.054 sum 13.893 0.087 -0.269 13.896 Atomic orbital electron populations 1.69639 1.05547 1.28535 1.47552 1.24391 0.94898 0.98634 0.95444 0.86287 0.80760 0.81719 0.79016 1.19981 1.20981 1.17848 1.20766 0.76897 0.96575 1.52212 0.87483 1.83610 1.22422 1.25347 1.79077 1.19054 0.90438 0.85738 0.92591 1.21243 1.01196 0.91728 1.09962 1.20894 0.94352 0.96729 0.96690 1.20580 0.93948 0.97308 1.10840 1.20695 0.98546 0.90675 0.97531 1.17809 0.90031 0.92254 1.14422 1.18140 0.91923 0.91696 0.90829 1.20972 1.00825 0.98487 0.97800 1.20801 0.97188 0.93690 0.96872 1.19918 1.04743 1.02216 0.91566 1.18829 0.98168 0.93955 0.88022 1.45992 1.43630 1.24090 1.09407 0.72050 1.76670 1.07524 1.04349 1.19395 1.23832 0.97834 0.96270 0.91397 1.18849 1.03968 0.97515 0.96011 0.91012 0.84713 0.87140 0.87224 0.86656 0.85620 0.85589 0.86277 0.79468 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -25.12 13.96 55.48 0.77 -24.35 16 2 C 0.07 1.96 5.49 -17.52 -0.10 1.87 16 3 Si 0.90 22.33 28.62 -169.99 -4.86 17.46 16 4 H -0.27 -6.77 7.11 56.52 0.40 -6.37 16 5 H -0.28 -6.90 7.11 56.52 0.40 -6.49 16 6 H -0.25 -6.56 7.11 56.52 0.40 -6.15 16 7 C -0.39 -10.63 9.94 30.88 0.31 -10.32 16 8 H 0.11 2.97 5.44 -52.49 -0.29 2.68 16 9 O -0.20 -5.06 7.80 0.44 0.00 -5.06 16 10 C 0.18 3.84 6.62 -38.70 -0.26 3.59 16 11 C -0.22 -4.54 9.16 -39.44 -0.36 -4.90 16 12 C -0.07 -1.16 10.03 -39.54 -0.40 -1.56 16 13 C -0.21 -3.25 10.03 -39.59 -0.40 -3.65 16 14 C -0.06 -0.92 9.73 -39.24 -0.38 -1.30 16 15 C -0.14 -2.74 5.20 -104.75 -0.54 -3.29 16 16 C 0.08 1.43 4.97 -104.61 -0.52 0.91 16 17 C -0.16 -2.57 9.70 -39.25 -0.38 -2.95 16 18 C -0.06 -0.89 10.00 -39.62 -0.40 -1.29 16 19 C -0.16 -2.33 10.06 -39.38 -0.40 -2.72 16 20 C 0.13 2.17 7.32 -84.17 -0.62 1.56 16 21 N -0.52 -8.34 7.44 32.35 0.24 -8.10 16 22 H 0.44 5.31 8.96 -182.65 -1.64 3.67 16 23 N -0.27 -4.96 12.57 30.83 0.39 -4.58 16 24 C 0.10 1.99 11.85 -17.07 -0.20 1.78 16 25 C -0.16 -2.99 5.70 -106.73 -0.61 -3.60 16 26 H 0.28 7.48 8.31 -40.82 -0.34 7.14 16 27 H 0.14 2.89 5.64 -52.48 -0.30 2.60 16 28 H 0.11 1.58 8.06 -52.49 -0.42 1.16 16 29 H 0.11 1.41 8.06 -52.49 -0.42 0.99 16 30 H 0.12 1.59 8.06 -52.49 -0.42 1.17 16 31 H 0.13 1.77 8.06 -52.49 -0.42 1.35 16 32 H 0.13 1.29 8.06 -52.49 -0.42 0.87 16 33 H 0.12 1.33 8.06 -52.48 -0.42 0.90 16 34 H 0.19 3.47 8.06 -52.48 -0.42 3.05 16 LS Contribution 302.30 15.07 4.56 4.56 Total: -1.00 -30.90 302.30 -8.46 -39.36 By element: Atomic # 1 Polarization: 10.88 SS G_CDS: -4.31 Total: 6.57 kcal Atomic # 6 Polarization: -20.62 SS G_CDS: -5.25 Total: -25.87 kcal Atomic # 7 Polarization: -38.43 SS G_CDS: 1.40 Total: -37.02 kcal Atomic # 8 Polarization: -5.06 SS G_CDS: 0.00 Total: -5.06 kcal Atomic # 14 Polarization: 22.33 SS G_CDS: -4.86 Total: 17.46 kcal Total LS contribution 4.56 Total: 4.56 kcal Total: -30.90 -8.46 -39.36 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001240314110.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 128.196 kcal (2) G-P(sol) polarization free energy of solvation -30.901 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 97.296 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.463 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.364 kcal (6) G-S(sol) free energy of system = (1) + (5) 88.832 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds