Wall clock time and date at job start Fri Apr 10 2020 17:15:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31561 * 1 3 3 Si 1.86806 * 119.99917 * 2 1 4 4 H 1.48492 * 109.47108 * 269.99832 * 3 2 1 5 5 H 1.48499 * 109.47216 * 30.00079 * 3 2 1 6 6 H 1.48511 * 109.46890 * 150.00084 * 3 2 1 7 7 C 1.38641 * 120.00358 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99566 * 359.97438 * 7 2 1 9 9 O 1.34803 * 120.00564 * 180.02562 * 7 2 1 10 10 C 1.35648 * 117.00554 * 185.08324 * 9 7 2 11 11 C 1.38744 * 120.13598 * 354.39565 * 10 9 7 12 12 C 1.38116 * 120.05858 * 179.97438 * 11 10 9 13 13 C 1.38480 * 120.34891 * 359.97438 * 12 11 10 14 14 C 1.37968 * 120.28538 * 0.02562 * 13 12 11 15 15 C 1.39421 * 119.93392 * 359.97438 * 14 13 12 16 16 C 1.48032 * 120.17339 * 180.02562 * 15 14 13 17 17 C 1.38746 * 120.26922 * 64.97208 * 16 15 14 18 18 C 1.38624 * 120.39430 * 180.02562 * 17 16 15 19 19 C 1.37753 * 120.74612 * 0.03176 * 18 17 16 20 20 C 1.39264 * 120.14629 * 359.97438 * 19 18 17 21 21 N 1.37184 * 133.65269 * 180.02562 * 20 19 18 22 22 H 0.96995 * 125.96887 * 359.95053 * 21 20 19 23 23 N 1.40034 * 108.05292 * 179.18702 * 21 20 19 24 24 C 1.30207 * 109.71696 * 0.71589 * 23 21 20 25 25 C 1.40664 * 119.77446 * 359.68385 * 20 19 18 26 26 H 0.97002 * 120.00147 * 359.97438 * 1 2 3 27 27 H 1.08003 * 119.97511 * 359.96229 * 11 10 9 28 28 H 1.08001 * 119.82501 * 179.72491 * 12 11 10 29 29 H 1.07999 * 119.85778 * 179.97438 * 13 12 11 30 30 H 1.07998 * 120.03468 * 180.02562 * 14 13 12 31 31 H 1.08001 * 119.80693 * 359.97438 * 17 16 15 32 32 H 1.07995 * 119.62257 * 179.97438 * 18 17 16 33 33 H 1.08004 * 119.92334 * 179.97438 * 19 18 17 34 34 H 1.08003 * 125.65900 * 179.43233 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3156 0.0000 0.0000 3 14 2.2496 1.6178 0.0000 4 1 2.4971 2.0464 -1.4000 5 1 1.4471 2.6527 0.7000 6 1 3.5473 1.4402 0.7001 7 6 2.0089 -1.2006 -0.0005 8 1 1.4689 -2.1359 -0.0005 9 8 3.3569 -1.2007 0.0000 10 6 3.9729 -2.4044 -0.1077 11 6 3.2251 -3.5731 -0.0951 12 6 3.8539 -4.7979 -0.2053 13 6 5.2313 -4.8686 -0.3294 14 6 5.9888 -3.7155 -0.3436 15 6 5.3663 -2.4729 -0.2331 16 6 6.1738 -1.2323 -0.2483 17 6 6.8830 -0.8733 -1.3855 18 6 7.6405 0.2876 -1.4024 19 6 7.7037 1.1034 -0.2942 20 6 7.0026 0.7687 0.8616 21 7 6.8683 1.3597 2.0923 22 1 7.2861 2.1881 2.3751 23 7 6.0089 0.5670 2.8629 24 6 5.6322 -0.4712 2.1732 25 6 6.2238 -0.4023 0.8917 26 1 -0.4850 0.8401 0.0004 27 1 2.1505 -3.5251 0.0013 28 1 3.2686 -5.7054 -0.1906 29 1 5.7148 -5.8306 -0.4147 30 1 7.0627 -3.7754 -0.4410 31 1 6.8454 -1.5024 -2.2625 32 1 8.1879 0.5549 -2.2941 33 1 8.2983 2.0046 -0.3219 34 1 4.9758 -1.2546 2.5222 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001240314110.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:15:48 Heat of formation + Delta-G solvation = 70.432262 kcal Electronic energy + Delta-G solvation = -21196.145876 eV Core-core repulsion = 18060.320142 eV Total energy + Delta-G solvation = -3135.825734 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 280.095 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -42.38428 -40.81061 -38.44863 -37.66343 -34.49855 -34.05349 -32.00316 -30.88498 -30.51234 -29.35313 -27.19907 -24.60124 -23.62614 -22.82337 -22.68350 -21.94702 -19.79505 -19.29353 -18.22092 -17.67412 -16.66267 -16.51959 -16.06787 -15.86478 -15.78576 -15.57613 -15.35000 -15.29258 -14.56387 -14.33662 -14.19926 -14.06437 -13.17575 -12.86711 -12.75616 -12.69274 -12.51725 -12.34227 -12.23002 -11.95731 -11.84355 -11.25957 -11.18429 -10.93349 -9.76711 -9.51431 -9.11245 -8.71707 -8.52453 -6.20121 -0.16387 0.48526 0.67055 0.76081 1.22408 1.25207 1.44605 1.56875 1.81965 2.21924 2.75485 2.85600 3.06212 3.19384 3.57783 3.75699 4.02192 4.08462 4.22576 4.25034 4.32202 4.45490 4.59418 4.68576 4.79033 4.90330 4.98409 5.01607 5.23079 5.39992 5.41923 5.52936 5.60000 5.67208 5.77554 5.81859 5.91121 5.98174 6.27310 6.40157 6.60834 6.84913 7.63898 8.59446 Molecular weight = 280.10amu Principal moments of inertia in cm(-1) A = 0.011730 B = 0.010048 C = 0.006565 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2386.540788 B = 2786.025925 C = 4264.237454 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.921 5.921 2 C 0.021 3.979 3 Si 0.956 3.044 4 H -0.269 1.269 5 H -0.276 1.276 6 H -0.271 1.271 7 C -0.386 4.386 8 H 0.086 0.914 9 O -0.228 6.228 10 C 0.140 3.860 11 C -0.242 4.242 12 C -0.071 4.071 13 C -0.180 4.180 14 C -0.055 4.055 15 C -0.135 4.135 16 C 0.041 3.959 17 C -0.159 4.159 18 C -0.058 4.058 19 C -0.154 4.154 20 C 0.113 3.887 21 N -0.505 5.505 22 H 0.451 0.549 23 N -0.283 5.283 24 C 0.080 3.920 25 C -0.183 4.183 26 H 0.282 0.718 27 H 0.110 0.890 28 H 0.140 0.860 29 H 0.154 0.846 30 H 0.151 0.849 31 H 0.143 0.857 32 H 0.171 0.829 33 H 0.158 0.842 34 H 0.178 0.822 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.791 -2.131 -2.337 18.070 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.562 5.562 2 C -0.178 4.178 3 Si 0.781 3.219 4 H -0.194 1.194 5 H -0.201 1.201 6 H -0.195 1.195 7 C -0.463 4.463 8 H 0.104 0.896 9 O -0.134 6.134 10 C 0.090 3.910 11 C -0.261 4.261 12 C -0.088 4.088 13 C -0.199 4.199 14 C -0.073 4.073 15 C -0.136 4.136 16 C 0.038 3.962 17 C -0.178 4.178 18 C -0.079 4.079 19 C -0.176 4.176 20 C -0.004 4.004 21 N -0.222 5.222 22 H 0.299 0.701 23 N -0.098 5.098 24 C -0.115 4.115 25 C -0.191 4.191 26 H 0.092 0.908 27 H 0.128 0.872 28 H 0.158 0.842 29 H 0.172 0.828 30 H 0.168 0.832 31 H 0.161 0.839 32 H 0.189 0.811 33 H 0.176 0.824 34 H 0.195 0.805 Dipole moment (debyes) X Y Z Total from point charges 17.594 -1.149 -1.134 17.668 hybrid contribution -0.699 0.644 -0.244 0.982 sum 16.895 -0.505 -1.378 16.959 Atomic orbital electron populations 1.69710 1.06547 1.29153 1.50787 1.24983 0.95550 1.01129 0.96101 0.85404 0.78788 0.78927 0.78827 1.19418 1.20136 1.19550 1.20700 0.78399 0.95851 1.51329 0.89626 1.83579 1.20649 1.27019 1.82187 1.19574 0.91930 0.85239 0.94288 1.21289 1.00291 0.93225 1.11301 1.21239 0.95615 0.96242 0.95752 1.21139 0.93124 0.99056 1.06552 1.21174 1.00384 0.89624 0.96149 1.18157 0.88810 0.94164 1.12509 1.18314 0.93747 0.92143 0.91999 1.21321 0.99889 0.99423 0.97171 1.21317 0.96164 0.92243 0.98135 1.20455 1.03577 1.03289 0.90239 1.19218 0.98640 0.93573 0.88995 1.45965 1.42876 1.24305 1.09099 0.70132 1.76556 1.08327 1.04632 1.20285 1.23795 0.98597 0.96685 0.92408 1.19076 1.05003 0.98930 0.96097 0.90819 0.87220 0.84198 0.82810 0.83173 0.83874 0.81140 0.82450 0.80520 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -55.55 13.96 21.61 0.30 -55.25 16 2 C 0.02 1.23 5.49 84.83 0.47 1.70 16 3 Si 0.96 48.06 28.62 68.60 1.96 50.03 16 4 H -0.27 -13.05 7.11 99.48 0.71 -12.35 16 5 H -0.28 -13.26 7.11 99.48 0.71 -12.55 16 6 H -0.27 -14.18 7.11 99.48 0.71 -13.47 16 7 C -0.39 -22.45 9.94 67.92 0.68 -21.78 16 8 H 0.09 5.17 5.44 -2.91 -0.02 5.16 16 9 O -0.23 -12.06 7.80 -21.33 -0.17 -12.23 16 10 C 0.14 6.30 6.62 22.84 0.15 6.45 16 11 C -0.24 -10.18 9.16 22.36 0.20 -9.98 16 12 C -0.07 -2.26 10.03 22.30 0.22 -2.04 16 13 C -0.18 -4.90 10.03 22.26 0.22 -4.68 16 14 C -0.06 -1.62 9.73 22.49 0.22 -1.40 16 15 C -0.14 -5.04 5.20 -19.95 -0.10 -5.14 16 16 C 0.04 1.47 4.97 -19.85 -0.10 1.37 16 17 C -0.16 -4.53 9.70 22.48 0.22 -4.31 16 18 C -0.06 -1.33 10.00 22.25 0.22 -1.11 16 19 C -0.15 -3.79 10.06 22.40 0.23 -3.56 16 20 C 0.11 3.65 7.32 39.15 0.29 3.94 16 21 N -0.50 -15.77 7.44 -51.56 -0.38 -16.15 16 22 H 0.45 10.25 8.96 -213.37 -1.91 8.34 16 23 N -0.28 -10.75 12.57 -56.38 -0.71 -11.46 16 24 C 0.08 3.22 11.85 85.69 1.02 4.24 16 25 C -0.18 -6.98 5.70 -21.23 -0.12 -7.10 16 26 H 0.28 15.80 8.31 -92.71 -0.77 15.03 16 27 H 0.11 5.10 5.64 -2.91 -0.02 5.09 16 28 H 0.14 3.62 8.06 -2.91 -0.02 3.60 16 29 H 0.15 2.95 8.06 -2.91 -0.02 2.92 16 30 H 0.15 3.38 8.06 -2.91 -0.02 3.36 16 31 H 0.14 3.48 8.06 -2.91 -0.02 3.46 16 32 H 0.17 2.39 8.06 -2.91 -0.02 2.37 16 33 H 0.16 2.63 8.06 -2.91 -0.02 2.61 16 34 H 0.18 7.12 8.06 -2.91 -0.02 7.10 16 Total: -1.00 -71.86 302.30 4.05 -67.81 By element: Atomic # 1 Polarization: 21.42 SS G_CDS: -0.76 Total: 20.66 kcal Atomic # 6 Polarization: -47.22 SS G_CDS: 3.81 Total: -43.41 kcal Atomic # 7 Polarization: -82.07 SS G_CDS: -0.79 Total: -82.86 kcal Atomic # 8 Polarization: -12.06 SS G_CDS: -0.17 Total: -12.23 kcal Atomic # 14 Polarization: 48.06 SS G_CDS: 1.96 Total: 50.03 kcal Total: -71.86 4.05 -67.81 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001240314110.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 138.238 kcal (2) G-P(sol) polarization free energy of solvation -71.860 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 66.378 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.055 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.806 kcal (6) G-S(sol) free energy of system = (1) + (5) 70.432 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds