Wall clock time and date at job start Fri Apr 10 2020 17:14:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50710 * 1 3 3 C 1.33442 * 122.71717 * 2 1 4 4 S 1.76168 * 108.06129 * 180.02562 * 3 2 1 5 5 C 1.70964 * 90.34297 * 0.02562 * 4 3 2 6 6 N 1.38999 * 124.94809 * 180.02562 * 5 4 3 7 7 C 1.34777 * 120.00175 * 174.19797 * 6 5 4 8 8 O 1.21286 * 120.00149 * 0.02562 * 7 6 5 9 9 C 1.50703 * 120.00037 * 180.02562 * 7 6 5 10 10 C 1.52995 * 109.47193 * 180.02562 * 9 7 6 11 11 C 1.50695 * 109.47414 * 179.97438 * 10 9 7 12 12 H 1.08008 * 119.99840 * 359.97438 * 11 10 9 13 13 C 1.37881 * 120.00457 * 180.02562 * 11 10 9 14 14 N 1.31510 * 119.99761 * 359.97438 * 13 11 10 15 15 Si 1.86800 * 120.00194 * 180.02562 * 13 11 10 16 16 H 1.48496 * 109.47113 * 89.99607 * 15 13 11 17 17 H 1.48499 * 109.46814 * 209.99921 * 15 13 11 18 18 H 1.48502 * 109.47129 * 329.99508 * 15 13 11 19 19 C 1.46503 * 120.00045 * 354.20363 * 6 5 4 20 20 C 1.52998 * 117.49707 * 313.05441 * 19 6 5 21 21 C 1.52994 * 117.49959 * 244.38991 * 19 6 5 22 22 N 1.29632 * 110.11185 * 0.02562 * 5 4 3 23 23 H 1.09001 * 109.46979 * 90.02027 * 1 2 3 24 24 H 1.08997 * 109.47075 * 210.01983 * 1 2 3 25 25 H 1.08995 * 109.46664 * 330.02144 * 1 2 3 26 26 H 1.08000 * 125.96492 * 0.26768 * 3 2 1 27 27 H 1.08998 * 109.46909 * 300.00072 * 9 7 6 28 28 H 1.08991 * 109.47227 * 60.00149 * 9 7 6 29 29 H 1.09003 * 109.47036 * 300.00175 * 10 9 7 30 30 H 1.09007 * 109.47586 * 59.99796 * 10 9 7 31 31 H 0.96996 * 120.00368 * 180.02562 * 14 13 11 32 32 H 1.08997 * 115.54905 * 98.71484 * 19 6 5 33 33 H 1.09001 * 117.49993 * 359.97438 * 20 19 6 34 34 H 1.09000 * 117.49928 * 145.01585 * 20 19 6 35 35 H 1.08997 * 117.50045 * 214.97441 * 21 19 6 36 36 H 1.08996 * 117.49829 * 0.02562 * 21 19 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.2283 1.1227 0.0000 4 16 3.9327 0.6770 -0.0007 5 6 3.5101 -0.9796 -0.0018 6 7 4.4172 -2.0328 -0.0022 7 6 3.9771 -3.3013 0.1150 8 8 2.7896 -3.5239 0.2204 9 6 4.9607 -4.4431 0.1151 10 6 4.2062 -5.7662 0.2593 11 6 5.1896 -6.9080 0.2588 12 1 6.2472 -6.7098 0.1645 13 6 4.7394 -8.2058 0.3775 14 7 3.4517 -8.4472 0.4917 15 14 5.9586 -9.6211 0.3775 16 1 6.3871 -9.9052 1.7706 17 1 5.3148 -10.8290 -0.1985 18 1 7.1430 -9.2542 -0.4396 19 6 5.8517 -1.7640 -0.1299 20 6 6.2932 -0.7904 -1.2245 21 6 6.5604 -2.2897 -1.3798 22 7 2.2204 -1.1106 -0.0020 23 1 -0.3633 -0.0004 -1.0277 24 1 -0.3633 -0.8898 0.5141 25 1 -0.3632 0.8902 0.5135 26 1 1.8357 2.1288 0.0041 27 1 5.5175 -4.4430 -0.8219 28 1 5.6528 -4.3264 0.9490 29 1 3.6490 -5.7665 1.1961 30 1 3.5142 -5.8827 -0.5749 31 1 3.1349 -9.3601 0.5756 32 1 6.4142 -1.7603 0.8036 33 1 5.5164 -0.3502 -1.8498 34 1 7.1465 -0.1466 -1.0111 35 1 7.5893 -2.6315 -1.2686 36 1 5.9593 -2.8351 -2.1072 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000291382605.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:14:05 Heat of formation + Delta-G solvation = 43.625366 kcal Electronic energy + Delta-G solvation = -19421.599080 eV Core-core repulsion = 16420.054863 eV Total energy + Delta-G solvation = -3001.544217 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 280.099 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.56460 -39.03230 -37.35448 -33.92175 -33.37443 -31.38710 -30.61767 -27.52199 -26.39367 -24.27970 -23.23811 -22.48829 -21.29565 -19.98633 -18.62435 -17.89041 -16.90143 -16.54894 -16.05503 -15.50156 -14.86745 -14.48196 -14.40262 -14.24138 -13.90940 -13.12621 -12.98930 -12.74026 -12.47551 -12.20459 -12.14425 -11.78644 -11.41602 -11.21298 -10.98324 -10.94746 -10.74735 -10.60609 -10.11541 -9.93346 -9.83443 -9.60814 -9.14523 -9.10861 -8.87785 -8.34086 -7.97221 -5.97311 -4.02245 0.84920 1.12767 1.76965 2.63654 2.81511 3.29228 3.32591 3.35129 3.38750 3.40986 4.40637 4.43568 4.53502 4.62395 4.72218 5.14999 5.18858 5.32847 5.37694 5.37956 5.59150 5.61790 5.69522 5.75814 5.86361 5.88773 6.13260 6.15819 6.19598 6.49966 6.77416 7.25833 7.71676 7.81527 8.02009 8.04132 8.33937 8.55964 9.05513 9.61416 11.13675 Molecular weight = 280.10amu Principal moments of inertia in cm(-1) A = 0.024616 B = 0.004394 C = 0.003790 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1137.211253 B = 6370.663670 C = 7386.692300 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 C 0.101 3.899 3 C -0.304 4.304 4 S 0.106 5.894 5 C 0.293 3.707 6 N -0.511 5.511 7 C 0.505 3.495 8 O -0.461 6.461 9 C -0.119 4.119 10 C 0.035 3.965 11 C -0.527 4.527 12 H 0.057 0.943 13 C 0.059 3.941 14 N -0.889 5.889 15 Si 0.893 3.107 16 H -0.280 1.280 17 H -0.286 1.286 18 H -0.274 1.274 19 C 0.050 3.950 20 C -0.181 4.181 21 C -0.159 4.159 22 N -0.482 5.482 23 H 0.075 0.925 24 H 0.078 0.922 25 H 0.072 0.928 26 H 0.174 0.826 27 H 0.086 0.914 28 H 0.083 0.917 29 H 0.024 0.976 30 H 0.024 0.976 31 H 0.261 0.739 32 H 0.134 0.866 33 H 0.103 0.897 34 H 0.114 0.886 35 H 0.117 0.883 36 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.340 21.432 -2.572 22.018 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.031 4.031 3 C -0.444 4.444 4 S 0.357 5.643 5 C -0.075 4.075 6 N -0.242 5.242 7 C 0.293 3.707 8 O -0.327 6.327 9 C -0.159 4.159 10 C -0.002 4.002 11 C -0.565 4.565 12 H 0.075 0.925 13 C -0.143 4.143 14 N -0.527 5.527 15 Si 0.721 3.279 16 H -0.207 1.207 17 H -0.212 1.212 18 H -0.198 1.198 19 C -0.054 4.054 20 C -0.219 4.219 21 C -0.197 4.197 22 N -0.204 5.204 23 H 0.093 0.907 24 H 0.097 0.903 25 H 0.091 0.909 26 H 0.191 0.809 27 H 0.104 0.896 28 H 0.102 0.898 29 H 0.042 0.958 30 H 0.042 0.958 31 H 0.071 0.929 32 H 0.152 0.848 33 H 0.121 0.879 34 H 0.132 0.868 35 H 0.135 0.865 36 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges 4.279 21.047 -2.479 21.620 hybrid contribution -0.246 -0.760 0.069 0.802 sum 4.033 20.286 -2.409 20.823 Atomic orbital electron populations 1.20368 0.87245 1.03307 1.02906 1.20176 0.98123 0.85957 0.98880 1.26499 0.94478 1.03497 1.19913 1.83751 1.07842 0.99940 1.72743 1.23896 0.90448 0.92403 1.00714 1.45434 1.04263 1.04111 1.70425 1.22164 0.91290 0.82050 0.75195 1.90788 1.17341 1.82101 1.42447 1.21976 0.97404 0.93472 1.03031 1.18958 0.95149 0.87506 0.98623 1.21162 0.93152 0.91129 1.51061 0.92499 1.25021 0.95088 0.98946 0.95252 1.69996 1.12984 1.20280 1.49444 0.86585 0.81190 0.81967 0.78172 1.20659 1.21220 1.19848 1.21971 0.79923 1.07702 0.95836 1.23444 1.03854 0.93802 1.00817 1.23454 1.02284 0.95823 0.98157 1.66470 1.02436 1.30483 1.21026 0.90654 0.90275 0.90868 0.80899 0.89559 0.89844 0.95774 0.95751 0.92899 0.84847 0.87877 0.86782 0.86523 0.87496 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.92 10.31 36.01 0.37 -0.55 16 2 C 0.10 1.50 6.74 -84.20 -0.57 0.94 16 3 C -0.30 -3.66 11.11 29.06 0.32 -3.34 16 4 S 0.11 1.26 20.24 -107.50 -2.18 -0.91 16 5 C 0.29 4.89 7.41 -87.34 -0.65 4.24 16 6 N -0.51 -8.44 2.99 -110.29 -0.33 -8.77 16 7 C 0.51 10.49 7.57 -10.98 -0.08 10.40 16 8 O -0.46 -11.67 14.63 5.55 0.08 -11.58 16 9 C -0.12 -2.42 4.31 -27.88 -0.12 -2.54 16 10 C 0.04 0.95 4.26 -27.89 -0.12 0.83 16 11 C -0.53 -14.78 9.11 -34.44 -0.31 -15.09 16 12 H 0.06 1.49 7.74 -52.48 -0.41 1.08 16 13 C 0.06 1.70 5.46 -17.82 -0.10 1.60 16 14 N -0.89 -27.42 13.29 55.43 0.74 -26.68 16 15 Si 0.89 21.50 29.54 -169.99 -5.02 16.48 16 16 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 17 H -0.29 -6.88 7.11 56.52 0.40 -6.47 16 18 H -0.27 -6.35 7.11 56.52 0.40 -5.95 16 19 C 0.05 0.58 5.11 -67.93 -0.35 0.23 16 20 C -0.18 -1.60 8.77 -26.69 -0.23 -1.84 16 21 C -0.16 -1.59 8.76 -26.69 -0.23 -1.83 16 22 N -0.48 -9.10 8.66 -11.27 -0.10 -9.20 16 23 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 24 H 0.08 1.04 8.14 -51.93 -0.42 0.61 16 25 H 0.07 0.64 8.12 -51.93 -0.42 0.21 16 26 H 0.17 1.51 8.06 -52.49 -0.42 1.08 16 27 H 0.09 1.58 6.25 -51.93 -0.32 1.25 16 28 H 0.08 1.54 8.11 -51.93 -0.42 1.12 16 29 H 0.02 0.71 8.10 -51.93 -0.42 0.29 16 30 H 0.02 0.72 8.10 -51.93 -0.42 0.30 16 31 H 0.26 7.57 8.31 -40.82 -0.34 7.23 16 32 H 0.13 1.30 8.14 -51.93 -0.42 0.87 16 33 H 0.10 1.01 7.10 -51.93 -0.37 0.64 16 34 H 0.11 0.71 8.14 -51.93 -0.42 0.29 16 35 H 0.12 0.92 8.14 -51.93 -0.42 0.50 16 36 H 0.11 1.25 7.61 -51.93 -0.39 0.85 16 LS Contribution 317.77 15.07 4.79 4.79 Total: -1.00 -35.84 317.77 -8.94 -44.77 By element: Atomic # 1 Polarization: 2.90 SS G_CDS: -4.85 Total: -1.95 kcal Atomic # 6 Polarization: -4.87 SS G_CDS: -2.07 Total: -6.94 kcal Atomic # 7 Polarization: -44.96 SS G_CDS: 0.31 Total: -44.65 kcal Atomic # 8 Polarization: -11.67 SS G_CDS: 0.08 Total: -11.58 kcal Atomic # 14 Polarization: 21.50 SS G_CDS: -5.02 Total: 16.48 kcal Atomic # 16 Polarization: 1.26 SS G_CDS: -2.18 Total: -0.91 kcal Total LS contribution 4.79 Total: 4.79 kcal Total: -35.84 -8.94 -44.77 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000291382605.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.397 kcal (2) G-P(sol) polarization free energy of solvation -35.836 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 52.561 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.936 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.772 kcal (6) G-S(sol) free energy of system = (1) + (5) 43.625 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds