Wall clock time and date at job start Fri Apr 10 2020 17:15:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.38244 * 119.93837 * 2 1 4 4 C 1.38426 * 120.33639 * 180.02562 * 3 2 1 5 5 C 1.37895 * 120.21708 * 0.23707 * 4 3 2 6 6 C 1.39628 * 119.87875 * 359.49145 * 5 4 3 7 7 C 1.47689 * 120.16768 * 180.25541 * 6 5 4 8 8 O 1.21568 * 120.00102 * 180.26985 * 7 6 5 9 9 N 1.34782 * 119.99971 * 0.27540 * 7 6 5 10 10 C 1.46498 * 119.99765 * 180.02562 * 9 7 6 11 11 C 1.50704 * 109.46679 * 179.97438 * 10 9 7 12 12 O 1.21291 * 120.00473 * 359.97438 * 11 10 9 13 13 N 1.34781 * 119.99902 * 179.97438 * 11 10 9 14 14 C 1.37090 * 120.00169 * 179.97438 * 13 11 10 15 15 H 1.08002 * 120.00002 * 359.97438 * 14 13 11 16 16 C 1.38946 * 120.00039 * 179.97438 * 14 13 11 17 17 N 1.31420 * 120.00083 * 180.02562 * 16 14 13 18 18 Si 1.86796 * 120.00146 * 0.02562 * 16 14 13 19 19 H 1.48501 * 109.47115 * 89.99889 * 18 16 14 20 20 H 1.48499 * 109.47483 * 209.99709 * 18 16 14 21 21 H 1.48496 * 109.47015 * 330.00045 * 18 16 14 22 22 C 1.38277 * 119.94141 * 179.97438 * 2 1 3 23 23 F 1.35103 * 120.11078 * 0.03659 * 22 2 1 24 24 H 1.08999 * 109.47500 * 89.99726 * 1 2 3 25 25 H 1.09003 * 109.47134 * 209.99660 * 1 2 3 26 26 H 1.09004 * 109.46927 * 329.99632 * 1 2 3 27 27 H 1.07998 * 119.83408 * 359.97438 * 3 2 1 28 28 H 1.08002 * 119.88768 * 179.97438 * 4 3 2 29 29 H 1.07997 * 120.06081 * 179.72318 * 5 4 3 30 30 H 0.96996 * 119.99532 * 359.97438 * 9 7 6 31 31 H 1.09000 * 109.47063 * 299.99289 * 10 9 7 32 32 H 1.08994 * 109.47729 * 59.99478 * 10 9 7 33 33 H 0.97004 * 119.99363 * 359.97438 * 13 11 10 34 34 H 0.96998 * 120.00245 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1970 1.1980 0.0000 4 6 3.5812 1.2076 -0.0005 5 6 4.2834 0.0209 -0.0060 6 6 3.5958 -1.1943 -0.0003 7 6 4.3415 -2.4691 -0.0004 8 8 3.7397 -3.5254 -0.0003 9 7 5.6893 -2.4614 -0.0004 10 6 6.4290 -3.7259 -0.0011 11 6 7.9091 -3.4420 -0.0016 12 8 8.3069 -2.2962 -0.0019 13 7 8.7908 -4.4614 -0.0018 14 6 10.1372 -4.2032 -0.0028 15 1 10.4913 -3.1829 -0.0039 16 6 11.0461 -5.2541 -0.0024 17 7 12.3368 -5.0066 -0.0029 18 14 10.4336 -7.0188 -0.0012 19 1 10.2709 -7.4873 -1.4010 20 1 11.4169 -7.8837 0.6990 21 1 9.1260 -7.0884 0.6992 22 6 2.1972 -1.1982 0.0005 23 9 1.5227 -2.3689 0.0003 24 1 -0.3634 0.0000 -1.0276 25 1 -0.3633 -0.8900 0.5138 26 1 -0.3633 0.8900 0.5139 27 1 1.6533 2.1311 -0.0004 28 1 4.1128 2.1477 -0.0009 29 1 5.3633 0.0313 -0.0109 30 1 6.1694 -1.6186 -0.0007 31 1 6.1691 -4.2994 0.8887 32 1 6.1689 -4.2986 -0.8912 33 1 8.4726 -5.3778 -0.0012 34 1 12.9713 -5.7403 -0.0030 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000343507455.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:15:50 Heat of formation + Delta-G solvation = -115.893994 kcal Electronic energy + Delta-G solvation = -20716.536600 eV Core-core repulsion = 17141.861929 eV Total energy + Delta-G solvation = -3574.674671 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 280.101 amu Computer time = 4.03 seconds Orbital eigenvalues (eV) -49.94958 -41.35800 -40.30073 -39.38884 -36.35427 -35.49989 -34.00999 -33.81376 -31.90068 -29.60903 -27.88730 -26.49503 -24.68704 -22.84137 -21.53276 -21.51297 -20.61228 -19.08690 -18.31076 -17.81188 -17.39008 -17.08315 -16.73596 -16.59394 -16.51432 -15.88576 -15.50364 -15.48568 -15.02109 -14.54421 -14.33359 -14.23994 -14.20048 -13.97801 -13.75602 -13.38909 -12.99749 -12.84428 -12.71712 -12.46525 -12.27912 -12.01979 -11.60489 -11.19311 -10.70015 -10.41988 -10.32983 -9.97290 -9.69586 -8.47413 -6.09460 -0.37764 0.11220 1.29695 1.32622 1.42412 1.66172 1.76257 1.83463 2.18812 2.61392 2.80415 3.08709 3.13678 3.47613 3.62456 3.90041 3.94876 4.10772 4.21325 4.31569 4.34201 4.53121 4.73600 4.77759 4.91767 5.03838 5.09862 5.20141 5.25404 5.32129 5.45968 5.80050 5.85640 6.33074 6.45756 6.75412 6.97088 7.26248 7.73894 8.68835 Molecular weight = 280.10amu Principal moments of inertia in cm(-1) A = 0.038784 B = 0.003340 C = 0.003082 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 721.779829 B = 8381.545605 C = 9082.879192 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.133 4.133 3 C -0.054 4.054 4 C -0.124 4.124 5 C -0.067 4.067 6 C -0.190 4.190 7 C 0.555 3.445 8 O -0.570 6.570 9 N -0.701 5.701 10 C 0.116 3.884 11 C 0.446 3.554 12 O -0.612 6.612 13 N -0.576 5.576 14 C -0.331 4.331 15 H 0.066 0.934 16 C -0.006 4.006 17 N -0.924 5.924 18 Si 0.957 3.043 19 H -0.257 1.257 20 H -0.273 1.273 21 H -0.234 1.234 22 C 0.123 3.877 23 F -0.136 7.136 24 H 0.084 0.916 25 H 0.059 0.941 26 H 0.102 0.898 27 H 0.179 0.821 28 H 0.171 0.829 29 H 0.144 0.856 30 H 0.414 0.586 31 H 0.105 0.895 32 H 0.106 0.894 33 H 0.392 0.608 34 H 0.282 0.718 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.164 10.274 0.000 25.340 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.134 4.134 3 C -0.071 4.071 4 C -0.142 4.142 5 C -0.086 4.086 6 C -0.194 4.194 7 C 0.343 3.657 8 O -0.450 6.450 9 N -0.356 5.356 10 C -0.011 4.011 11 C 0.233 3.767 12 O -0.498 6.498 13 N -0.216 5.216 14 C -0.460 4.460 15 H 0.084 0.916 16 C -0.207 4.207 17 N -0.564 5.564 18 Si 0.778 3.222 19 H -0.181 1.181 20 H -0.198 1.198 21 H -0.158 1.158 22 C 0.103 3.897 23 F -0.114 7.114 24 H 0.103 0.897 25 H 0.078 0.922 26 H 0.121 0.879 27 H 0.196 0.804 28 H 0.189 0.811 29 H 0.161 0.839 30 H 0.254 0.746 31 H 0.123 0.877 32 H 0.124 0.876 33 H 0.228 0.772 34 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -23.081 10.144 0.003 25.212 hybrid contribution 0.752 -1.248 -0.003 1.457 sum -22.329 8.896 0.000 24.036 Atomic orbital electron populations 1.20818 0.87937 1.04353 1.03845 1.20307 0.98715 0.90957 1.03427 1.21640 0.94180 0.97784 0.93539 1.21600 0.94579 0.98658 0.99330 1.21525 1.01047 0.90823 0.95198 1.19962 0.92667 0.94259 1.12506 1.18417 0.81812 0.89252 0.76190 1.90787 1.69099 1.33471 1.51672 1.45570 1.05567 1.10308 1.74152 1.20932 0.87442 0.87408 1.05328 1.20375 0.88404 0.85335 0.82562 1.90517 1.80531 1.22296 1.56458 1.41922 1.05593 1.07999 1.66084 1.19039 0.80744 0.95457 1.50801 0.91617 1.26044 0.94828 1.04108 0.95673 1.69775 1.02387 1.35085 1.49123 0.85461 0.79933 0.76777 0.80072 1.18095 1.19757 1.15754 1.17957 0.88582 0.82086 1.01076 1.91508 1.79840 1.46828 1.93217 0.89724 0.92212 0.87930 0.80405 0.81136 0.83851 0.74566 0.87707 0.87619 0.77222 0.90864 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.35 9.83 71.24 0.70 -0.65 16 2 C -0.13 -2.29 5.88 -19.85 -0.12 -2.41 16 3 C -0.05 -0.61 9.69 22.32 0.22 -0.40 16 4 C -0.12 -1.62 10.03 22.23 0.22 -1.40 16 5 C -0.07 -1.35 9.54 22.52 0.21 -1.13 16 6 C -0.19 -5.13 5.88 -20.05 -0.12 -5.25 16 7 C 0.55 18.47 7.77 86.74 0.67 19.14 16 8 O -0.57 -22.49 15.34 -3.93 -0.06 -22.55 16 9 N -0.70 -22.83 5.48 -469.86 -2.57 -25.40 16 10 C 0.12 3.95 6.15 85.63 0.53 4.48 16 11 C 0.45 19.49 7.85 87.66 0.69 20.18 16 12 O -0.61 -31.16 15.24 -3.06 -0.05 -31.21 16 13 N -0.58 -26.53 5.09 -306.98 -1.56 -28.09 16 14 C -0.33 -18.74 10.16 84.04 0.85 -17.88 16 15 H 0.07 4.37 7.39 -2.91 -0.02 4.34 16 16 C -0.01 -0.34 5.50 84.92 0.47 0.13 16 17 N -0.92 -54.05 13.96 21.66 0.30 -53.75 16 18 Si 0.96 38.17 27.74 68.60 1.90 40.08 16 19 H -0.26 -9.76 7.11 99.48 0.71 -9.06 16 20 H -0.27 -10.78 7.11 99.48 0.71 -10.08 16 21 H -0.23 -8.03 6.52 99.48 0.65 -7.38 16 22 C 0.12 3.20 7.22 22.67 0.16 3.36 16 23 F -0.14 -4.24 14.76 44.97 0.66 -3.57 16 24 H 0.08 0.87 8.14 -2.39 -0.02 0.85 16 25 H 0.06 0.87 7.64 -2.39 -0.02 0.85 16 26 H 0.10 0.63 8.08 -2.38 -0.02 0.61 16 27 H 0.18 0.59 8.06 -2.91 -0.02 0.56 16 28 H 0.17 1.11 8.06 -2.91 -0.02 1.09 16 29 H 0.14 2.71 6.40 -2.91 -0.02 2.69 16 30 H 0.41 13.00 5.47 -92.71 -0.51 12.49 16 31 H 0.11 3.26 8.14 -2.39 -0.02 3.25 16 32 H 0.11 3.27 8.14 -2.39 -0.02 3.25 16 33 H 0.39 15.22 5.76 -92.71 -0.53 14.69 16 34 H 0.28 15.06 8.31 -92.71 -0.77 14.29 16 Total: -1.00 -77.06 303.43 3.19 -73.87 By element: Atomic # 1 Polarization: 32.38 SS G_CDS: 0.07 Total: 32.44 kcal Atomic # 6 Polarization: 13.69 SS G_CDS: 4.49 Total: 18.18 kcal Atomic # 7 Polarization: -103.41 SS G_CDS: -3.83 Total: -107.25 kcal Atomic # 8 Polarization: -53.65 SS G_CDS: -0.11 Total: -53.76 kcal Atomic # 9 Polarization: -4.24 SS G_CDS: 0.66 Total: -3.57 kcal Atomic # 14 Polarization: 38.17 SS G_CDS: 1.90 Total: 40.08 kcal Total: -77.06 3.19 -73.87 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000343507455.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.019 kcal (2) G-P(sol) polarization free energy of solvation -77.062 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -119.081 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.187 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.875 kcal (6) G-S(sol) free energy of system = (1) + (5) -115.894 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 4.03 seconds