Wall clock time and date at job start Fri Apr 10 2020 17:16:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50709 * 1 3 3 C 1.33637 * 122.74693 * 2 1 4 4 S 1.76201 * 107.92049 * 179.97438 * 3 2 1 5 5 C 1.70971 * 90.28440 * 0.27379 * 4 3 2 6 6 C 1.50704 * 124.91725 * 179.83790 * 5 4 3 7 7 C 1.52999 * 109.47273 * 270.00106 * 6 5 4 8 8 C 1.50692 * 109.47043 * 180.02562 * 7 6 5 9 9 O 1.21289 * 120.00266 * 359.97438 * 8 7 6 10 10 N 1.34783 * 119.99855 * 180.02562 * 8 7 6 11 11 C 1.37097 * 119.99711 * 179.97438 * 10 8 7 12 12 H 1.08000 * 119.99929 * 224.28117 * 11 10 8 13 13 C 1.38947 * 120.00233 * 44.29091 * 11 10 8 14 14 N 1.31409 * 120.00064 * 18.20009 * 13 11 10 15 15 Si 1.86798 * 120.00231 * 198.20563 * 13 11 10 16 16 H 1.48506 * 109.46999 * 59.99437 * 15 13 11 17 17 H 1.48491 * 109.47470 * 179.97438 * 15 13 11 18 18 H 1.48504 * 109.46970 * 299.99904 * 15 13 11 19 19 C 1.46501 * 119.99972 * 359.97438 * 10 8 7 20 20 C 1.53001 * 117.49568 * 183.22766 * 19 10 8 21 21 C 1.53001 * 117.49792 * 114.60589 * 19 10 8 22 22 N 1.29031 * 110.16645 * 359.84162 * 5 4 3 23 23 H 1.08996 * 109.47251 * 269.71034 * 1 2 3 24 24 H 1.09004 * 109.46529 * 149.70785 * 1 2 3 25 25 H 1.08998 * 109.46944 * 29.71101 * 1 2 3 26 26 H 1.07998 * 126.03981 * 0.03823 * 3 2 1 27 27 H 1.08998 * 109.46726 * 30.00240 * 6 5 4 28 28 H 1.09002 * 109.46604 * 150.00081 * 6 5 4 29 29 H 1.09003 * 109.46721 * 300.00034 * 7 6 5 30 30 H 1.08999 * 109.46853 * 59.99837 * 7 6 5 31 31 H 0.97003 * 120.00325 * 174.92564 * 14 13 11 32 32 H 1.09000 * 115.54733 * 328.93169 * 19 10 8 33 33 H 1.08996 * 117.50259 * 359.97438 * 20 19 10 34 34 H 1.08998 * 117.49323 * 145.01977 * 20 19 10 35 35 H 1.09000 * 117.49347 * 214.97995 * 21 19 10 36 36 H 1.08996 * 117.49840 * 359.97438 * 21 19 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.2300 1.1240 0.0000 4 16 3.9333 0.6731 0.0007 5 6 3.5040 -0.9818 -0.0072 6 6 4.4836 -2.1271 -0.0141 7 6 4.8135 -2.5073 -1.4589 8 6 5.7925 -3.6529 -1.4658 9 8 6.1879 -4.1190 -0.4182 10 7 6.2295 -4.1588 -2.6362 11 6 7.1206 -5.2007 -2.6424 12 1 7.9673 -5.1830 -3.3126 13 6 6.9343 -6.2794 -1.7866 14 7 5.7576 -6.4894 -1.2407 15 14 8.3566 -7.4309 -1.4119 16 1 9.4633 -6.6634 -0.7862 17 1 7.9015 -8.4924 -0.4786 18 1 8.8361 -8.0519 -2.6728 19 6 5.7524 -3.5954 -3.9015 20 6 6.2264 -4.2615 -5.1947 21 6 6.7779 -2.8921 -4.7930 22 7 2.2199 -1.1083 -0.0064 23 1 -0.3633 -0.0052 1.0276 24 1 -0.3632 -0.8874 -0.5184 25 1 -0.3633 0.8926 -0.5093 26 1 1.8392 2.1308 0.0006 27 1 5.3966 -1.8273 0.5002 28 1 4.0439 -2.9842 0.4959 29 1 3.9004 -2.8071 -1.9732 30 1 5.2531 -1.6501 -1.9689 31 1 5.6071 -7.2824 -0.7026 32 1 4.7398 -3.1923 -3.8844 33 1 6.8936 -5.1187 -5.1041 34 1 5.5255 -4.2969 -6.0287 35 1 6.4398 -2.0265 -5.3626 36 1 7.8074 -2.8482 -4.4378 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000345729471.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:16:28 Heat of formation + Delta-G solvation = 39.933675 kcal Electronic energy + Delta-G solvation = -19389.490302 eV Core-core repulsion = 16387.786002 eV Total energy + Delta-G solvation = -3001.704301 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 280.099 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -39.79220 -38.57261 -36.17778 -33.84538 -32.67794 -31.09532 -30.47734 -27.64046 -26.31038 -24.28416 -21.96587 -21.62439 -21.05372 -19.57931 -19.02603 -17.54339 -16.46645 -16.03156 -15.20879 -14.87204 -14.62081 -14.52316 -14.15458 -13.77926 -13.41121 -13.08403 -12.75751 -12.68153 -12.29133 -12.11273 -11.88573 -11.31294 -11.25487 -11.01719 -10.88351 -10.83605 -10.74448 -10.40542 -10.16422 -9.94734 -9.72192 -9.48145 -9.31503 -8.71477 -8.59623 -7.98814 -7.00340 -6.08154 -3.84151 0.79244 1.46497 1.84860 2.86417 3.32092 3.39471 3.42373 4.11404 4.17304 4.31145 4.78886 4.83813 5.04912 5.15189 5.24012 5.33952 5.49602 5.55536 5.59451 5.61874 5.63713 5.79553 5.81258 5.86656 6.03190 6.19249 6.23752 6.28776 6.46413 6.52246 6.57780 6.77501 6.94915 7.64155 7.88924 8.29847 9.09003 9.17808 9.68945 10.31366 11.00994 Molecular weight = 280.10amu Principal moments of inertia in cm(-1) A = 0.022248 B = 0.004539 C = 0.004179 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1258.229193 B = 6167.373291 C = 6697.847406 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 C 0.069 3.931 3 C -0.279 4.279 4 S 0.107 5.893 5 C 0.078 3.922 6 C -0.028 4.028 7 C -0.124 4.124 8 C 0.486 3.514 9 O -0.534 6.534 10 N -0.427 5.427 11 C -0.350 4.350 12 H 0.076 0.924 13 C 0.075 3.925 14 N -0.833 5.833 15 Si 0.913 3.087 16 H -0.274 1.274 17 H -0.286 1.286 18 H -0.278 1.278 19 C 0.075 3.925 20 C -0.174 4.174 21 C -0.208 4.208 22 N -0.476 5.476 23 H 0.073 0.927 24 H 0.076 0.924 25 H 0.072 0.928 26 H 0.172 0.828 27 H 0.091 0.909 28 H 0.103 0.897 29 H 0.080 0.920 30 H 0.075 0.925 31 H 0.265 0.735 32 H 0.102 0.898 33 H 0.107 0.893 34 H 0.083 0.917 35 H 0.083 0.917 36 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.646 13.884 -1.301 15.447 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.063 4.063 3 C -0.418 4.418 4 S 0.363 5.637 5 C -0.200 4.200 6 C -0.069 4.069 7 C -0.166 4.166 8 C 0.273 3.727 9 O -0.412 6.412 10 N -0.148 5.148 11 C -0.477 4.477 12 H 0.094 0.906 13 C -0.136 4.136 14 N -0.466 5.466 15 Si 0.740 3.260 16 H -0.200 1.200 17 H -0.212 1.212 18 H -0.204 1.204 19 C -0.032 4.032 20 C -0.211 4.211 21 C -0.247 4.247 22 N -0.191 5.191 23 H 0.092 0.908 24 H 0.095 0.905 25 H 0.090 0.910 26 H 0.190 0.810 27 H 0.109 0.891 28 H 0.121 0.879 29 H 0.098 0.902 30 H 0.093 0.907 31 H 0.075 0.925 32 H 0.119 0.881 33 H 0.125 0.875 34 H 0.101 0.899 35 H 0.101 0.899 36 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -5.809 13.570 -0.536 14.770 hybrid contribution -0.433 -0.506 0.003 0.666 sum -6.241 13.063 -0.533 14.488 Atomic orbital electron populations 1.20346 0.87401 1.03203 1.02781 1.20350 0.98212 0.86687 1.01069 1.26707 0.95349 1.03646 1.16070 1.84003 1.07277 1.03980 1.68477 1.27395 0.93989 0.98222 1.00377 1.20069 0.95042 0.93195 0.98575 1.21568 1.00409 0.99061 0.95576 1.19632 0.84434 0.84090 0.84535 1.90527 1.58781 1.61107 1.30766 1.42744 1.41091 1.30055 1.00930 1.18792 1.04930 0.98111 1.25887 0.90605 1.25235 0.95882 0.96530 0.95979 1.69815 1.21356 1.25510 1.29935 0.86276 0.82199 0.79438 0.78087 1.19954 1.21201 1.20420 1.21709 0.95172 1.01202 0.85099 1.23053 1.04010 0.96683 0.97371 1.23309 1.00469 0.95413 1.05487 1.66195 1.04671 1.31239 1.16977 0.90797 0.90517 0.90957 0.81041 0.89104 0.87891 0.90193 0.90677 0.92524 0.88065 0.87486 0.89857 0.89862 0.89101 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.78 10.31 36.01 0.37 -0.40 16 2 C 0.07 0.93 6.74 -84.22 -0.57 0.36 16 3 C -0.28 -3.28 11.13 29.12 0.32 -2.96 16 4 S 0.11 1.37 23.18 -107.50 -2.49 -1.12 16 5 C 0.08 1.26 6.64 -13.45 -0.09 1.17 16 6 C -0.03 -0.50 5.09 -27.88 -0.14 -0.64 16 7 C -0.12 -2.39 4.30 -27.89 -0.12 -2.51 16 8 C 0.49 12.15 6.96 -10.99 -0.08 12.07 16 9 O -0.53 -15.38 13.74 5.55 0.08 -15.31 16 10 N -0.43 -10.66 2.83 -107.73 -0.31 -10.97 16 11 C -0.35 -9.55 7.92 -14.93 -0.12 -9.67 16 12 H 0.08 2.00 7.26 -52.49 -0.38 1.62 16 13 C 0.07 2.10 4.39 -17.47 -0.08 2.02 16 14 N -0.83 -24.77 11.74 55.50 0.65 -24.12 16 15 Si 0.91 21.97 29.59 -169.99 -5.03 16.94 16 16 H -0.27 -6.67 7.11 56.52 0.40 -6.27 16 17 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 18 H -0.28 -6.38 7.11 56.52 0.40 -5.97 16 19 C 0.07 1.50 5.87 -67.93 -0.40 1.10 16 20 C -0.17 -3.15 9.80 -26.73 -0.26 -3.41 16 21 C -0.21 -3.54 10.36 -26.73 -0.28 -3.82 16 22 N -0.48 -7.89 10.53 -8.05 -0.08 -7.97 16 23 H 0.07 0.66 8.14 -51.93 -0.42 0.23 16 24 H 0.08 0.80 8.14 -51.93 -0.42 0.38 16 25 H 0.07 0.55 8.12 -51.93 -0.42 0.12 16 26 H 0.17 1.47 8.06 -52.49 -0.42 1.05 16 27 H 0.09 1.59 8.10 -51.93 -0.42 1.17 16 28 H 0.10 2.07 8.10 -51.93 -0.42 1.65 16 29 H 0.08 1.53 7.57 -51.93 -0.39 1.14 16 30 H 0.07 1.28 8.11 -51.93 -0.42 0.86 16 31 H 0.26 7.57 8.32 -40.82 -0.34 7.23 16 32 H 0.10 1.85 6.96 -51.93 -0.36 1.49 16 33 H 0.11 2.15 6.72 -51.93 -0.35 1.80 16 34 H 0.08 1.29 8.14 -51.93 -0.42 0.87 16 35 H 0.08 1.18 8.14 -51.93 -0.42 0.76 16 36 H 0.09 1.65 8.14 -51.93 -0.42 1.23 16 LS Contribution 320.46 15.07 4.83 4.83 Total: -1.00 -32.90 320.46 -8.63 -41.53 By element: Atomic # 1 Polarization: 7.71 SS G_CDS: -4.84 Total: 2.87 kcal Atomic # 6 Polarization: -5.25 SS G_CDS: -1.43 Total: -6.68 kcal Atomic # 7 Polarization: -43.32 SS G_CDS: 0.26 Total: -43.06 kcal Atomic # 8 Polarization: -15.38 SS G_CDS: 0.08 Total: -15.31 kcal Atomic # 14 Polarization: 21.97 SS G_CDS: -5.03 Total: 16.94 kcal Atomic # 16 Polarization: 1.37 SS G_CDS: -2.49 Total: -1.12 kcal Total LS contribution 4.83 Total: 4.83 kcal Total: -32.90 -8.63 -41.53 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000345729471.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.463 kcal (2) G-P(sol) polarization free energy of solvation -32.901 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 48.561 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.628 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.529 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.934 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds