Wall clock time and date at job start Fri Apr 10 2020 17:16:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50709 * 1 3 3 C 1.33637 * 122.74693 * 2 1 4 4 S 1.76201 * 107.92049 * 179.97438 * 3 2 1 5 5 C 1.70971 * 90.28440 * 0.27379 * 4 3 2 6 6 C 1.50704 * 124.91725 * 179.83790 * 5 4 3 7 7 C 1.52999 * 109.47273 * 270.00106 * 6 5 4 8 8 C 1.50692 * 109.47043 * 180.02562 * 7 6 5 9 9 O 1.21289 * 120.00266 * 359.97438 * 8 7 6 10 10 N 1.34783 * 119.99855 * 180.02562 * 8 7 6 11 11 C 1.37097 * 119.99711 * 179.97438 * 10 8 7 12 12 H 1.08000 * 119.99929 * 224.28117 * 11 10 8 13 13 C 1.38947 * 120.00233 * 44.29091 * 11 10 8 14 14 N 1.31409 * 120.00064 * 18.20009 * 13 11 10 15 15 Si 1.86798 * 120.00231 * 198.20563 * 13 11 10 16 16 H 1.48506 * 109.46999 * 59.99437 * 15 13 11 17 17 H 1.48491 * 109.47470 * 179.97438 * 15 13 11 18 18 H 1.48504 * 109.46970 * 299.99904 * 15 13 11 19 19 C 1.46501 * 119.99972 * 359.97438 * 10 8 7 20 20 C 1.53001 * 117.49568 * 183.22766 * 19 10 8 21 21 C 1.53001 * 117.49792 * 114.60589 * 19 10 8 22 22 N 1.29031 * 110.16645 * 359.84162 * 5 4 3 23 23 H 1.08996 * 109.47251 * 269.71034 * 1 2 3 24 24 H 1.09004 * 109.46529 * 149.70785 * 1 2 3 25 25 H 1.08998 * 109.46944 * 29.71101 * 1 2 3 26 26 H 1.07998 * 126.03981 * 0.03823 * 3 2 1 27 27 H 1.08998 * 109.46726 * 30.00240 * 6 5 4 28 28 H 1.09002 * 109.46604 * 150.00081 * 6 5 4 29 29 H 1.09003 * 109.46721 * 300.00034 * 7 6 5 30 30 H 1.08999 * 109.46853 * 59.99837 * 7 6 5 31 31 H 0.97003 * 120.00325 * 174.92564 * 14 13 11 32 32 H 1.09000 * 115.54733 * 328.93169 * 19 10 8 33 33 H 1.08996 * 117.50259 * 359.97438 * 20 19 10 34 34 H 1.08998 * 117.49323 * 145.01977 * 20 19 10 35 35 H 1.09000 * 117.49347 * 214.97995 * 21 19 10 36 36 H 1.08996 * 117.49840 * 359.97438 * 21 19 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.2300 1.1240 0.0000 4 16 3.9333 0.6731 0.0007 5 6 3.5040 -0.9818 -0.0072 6 6 4.4836 -2.1271 -0.0141 7 6 4.8135 -2.5073 -1.4589 8 6 5.7925 -3.6529 -1.4658 9 8 6.1879 -4.1190 -0.4182 10 7 6.2295 -4.1588 -2.6362 11 6 7.1206 -5.2007 -2.6424 12 1 7.9673 -5.1830 -3.3126 13 6 6.9343 -6.2794 -1.7866 14 7 5.7576 -6.4894 -1.2407 15 14 8.3566 -7.4309 -1.4119 16 1 9.4633 -6.6634 -0.7862 17 1 7.9015 -8.4924 -0.4786 18 1 8.8361 -8.0519 -2.6728 19 6 5.7524 -3.5954 -3.9015 20 6 6.2264 -4.2615 -5.1947 21 6 6.7779 -2.8921 -4.7930 22 7 2.2199 -1.1083 -0.0064 23 1 -0.3633 -0.0052 1.0276 24 1 -0.3632 -0.8874 -0.5184 25 1 -0.3633 0.8926 -0.5093 26 1 1.8392 2.1308 0.0006 27 1 5.3966 -1.8273 0.5002 28 1 4.0439 -2.9842 0.4959 29 1 3.9004 -2.8071 -1.9732 30 1 5.2531 -1.6501 -1.9689 31 1 5.6071 -7.2824 -0.7026 32 1 4.7398 -3.1923 -3.8844 33 1 6.8936 -5.1187 -5.1041 34 1 5.5255 -4.2969 -6.0287 35 1 6.4398 -2.0265 -5.3626 36 1 7.8074 -2.8482 -4.4378 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000345729471.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:16:28 Heat of formation + Delta-G solvation = 19.319754 kcal Electronic energy + Delta-G solvation = -19390.384189 eV Core-core repulsion = 16387.786002 eV Total energy + Delta-G solvation = -3002.598187 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 280.099 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -40.91498 -40.34574 -37.85520 -35.33809 -34.51177 -32.87555 -31.82594 -28.57214 -27.95618 -26.00147 -23.36156 -22.99744 -22.67678 -20.90335 -20.60486 -18.70744 -18.19037 -17.79801 -16.83213 -16.34157 -16.05176 -15.95995 -15.67695 -15.36928 -14.68862 -14.51553 -14.00596 -13.95433 -13.61771 -13.47906 -13.25635 -12.94433 -12.80541 -12.70513 -12.59710 -12.23516 -12.19062 -12.13508 -11.99699 -11.64152 -11.21839 -10.71866 -10.58930 -10.36303 -9.99035 -9.58856 -8.95950 -8.18688 -5.97537 -0.26579 0.42640 0.82615 1.36751 1.45607 1.49092 1.80565 2.24684 2.41817 2.95577 3.13197 3.24338 3.37236 3.86999 4.07046 4.13172 4.17074 4.24425 4.30510 4.33071 4.42530 4.50901 4.62999 4.78923 4.84693 4.87140 4.90421 5.03689 5.08186 5.08648 5.30266 5.39704 5.47260 5.51072 6.21386 6.84506 7.04972 7.20633 7.71184 8.36542 8.90037 Molecular weight = 280.10amu Principal moments of inertia in cm(-1) A = 0.022248 B = 0.004539 C = 0.004179 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1258.229193 B = 6167.373291 C = 6697.847406 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 C 0.041 3.959 3 C -0.258 4.258 4 S 0.153 5.847 5 C 0.042 3.958 6 C -0.016 4.016 7 C -0.104 4.104 8 C 0.469 3.531 9 O -0.585 6.585 10 N -0.443 5.443 11 C -0.357 4.357 12 H 0.079 0.921 13 C 0.022 3.978 14 N -0.874 5.874 15 Si 0.970 3.030 16 H -0.280 1.280 17 H -0.289 1.289 18 H -0.256 1.256 19 C 0.041 3.959 20 C -0.171 4.171 21 C -0.176 4.176 22 N -0.506 5.506 23 H 0.082 0.918 24 H 0.064 0.936 25 H 0.101 0.899 26 H 0.211 0.789 27 H 0.088 0.912 28 H 0.067 0.933 29 H 0.080 0.920 30 H 0.103 0.897 31 H 0.259 0.741 32 H 0.120 0.880 33 H 0.081 0.919 34 H 0.115 0.885 35 H 0.125 0.875 36 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.094 16.719 -2.855 18.385 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.090 4.090 3 C -0.396 4.396 4 S 0.408 5.592 5 C -0.236 4.236 6 C -0.058 4.058 7 C -0.146 4.146 8 C 0.258 3.742 9 O -0.467 6.467 10 N -0.164 5.164 11 C -0.485 4.485 12 H 0.096 0.904 13 C -0.184 4.184 14 N -0.509 5.509 15 Si 0.795 3.205 16 H -0.206 1.206 17 H -0.215 1.215 18 H -0.180 1.180 19 C -0.064 4.064 20 C -0.209 4.209 21 C -0.215 4.215 22 N -0.222 5.222 23 H 0.101 0.899 24 H 0.083 0.917 25 H 0.120 0.880 26 H 0.228 0.772 27 H 0.107 0.893 28 H 0.085 0.915 29 H 0.098 0.902 30 H 0.122 0.878 31 H 0.068 0.932 32 H 0.138 0.862 33 H 0.100 0.900 34 H 0.134 0.866 35 H 0.143 0.857 36 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -6.249 16.411 -2.149 17.692 hybrid contribution -0.305 -1.238 0.433 1.347 sum -6.554 15.173 -1.716 16.617 Atomic orbital electron populations 1.20444 0.85248 1.04109 1.03644 1.20850 0.99726 0.86364 1.02093 1.27228 0.94511 1.04911 1.13000 1.83775 1.07776 1.00590 1.67055 1.26864 0.93753 0.99480 1.03455 1.19743 0.95468 0.93237 0.97315 1.21379 0.98719 0.97597 0.96884 1.20582 0.84753 0.84891 0.83948 1.90480 1.60720 1.62953 1.32541 1.42993 1.40875 1.29638 1.02872 1.19074 1.05589 0.98434 1.25375 0.90374 1.26070 0.97888 0.98456 0.96018 1.69942 1.23351 1.26150 1.31459 0.85370 0.79040 0.77514 0.78534 1.20560 1.21458 1.18037 1.22011 0.97122 1.03573 0.83739 1.23107 1.04082 0.96580 0.97097 1.23321 0.98758 0.96173 1.03209 1.66168 1.05305 1.33643 1.17069 0.89911 0.91664 0.88023 0.77218 0.89316 0.91461 0.90200 0.87847 0.93194 0.86207 0.90015 0.86634 0.85725 0.90477 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.33 10.31 71.24 0.73 -0.59 16 2 C 0.04 1.02 6.74 41.53 0.28 1.30 16 3 C -0.26 -5.14 11.13 66.78 0.74 -4.39 16 4 S 0.15 3.55 23.18 -56.49 -1.31 2.24 16 5 C 0.04 1.32 6.64 88.52 0.59 1.90 16 6 C -0.02 -0.61 5.09 29.85 0.15 -0.46 16 7 C -0.10 -4.05 4.30 29.85 0.13 -3.93 16 8 C 0.47 24.21 6.96 87.65 0.61 24.82 16 9 O -0.59 -35.44 13.74 -3.06 -0.04 -35.48 16 10 N -0.44 -22.46 2.83 -613.13 -1.74 -24.20 16 11 C -0.36 -19.88 7.92 84.04 0.67 -19.21 16 12 H 0.08 4.18 7.26 -2.91 -0.02 4.16 16 13 C 0.02 1.26 4.39 84.93 0.37 1.63 16 14 N -0.87 -54.23 11.74 21.66 0.25 -53.98 16 15 Si 0.97 46.27 29.59 68.60 2.03 48.30 16 16 H -0.28 -13.45 7.11 99.48 0.71 -12.74 16 17 H -0.29 -13.74 7.11 99.48 0.71 -13.03 16 18 H -0.26 -11.14 7.11 99.48 0.71 -10.43 16 19 C 0.04 1.58 5.87 44.99 0.26 1.84 16 20 C -0.17 -5.88 9.80 30.60 0.30 -5.58 16 21 C -0.18 -5.49 10.36 30.60 0.32 -5.18 16 22 N -0.51 -16.58 10.53 -179.40 -1.89 -18.47 16 23 H 0.08 1.29 8.14 -2.39 -0.02 1.27 16 24 H 0.06 1.29 8.14 -2.38 -0.02 1.27 16 25 H 0.10 1.15 8.12 -2.39 -0.02 1.13 16 26 H 0.21 2.46 8.06 -2.91 -0.02 2.43 16 27 H 0.09 3.25 8.10 -2.39 -0.02 3.23 16 28 H 0.07 2.94 8.10 -2.39 -0.02 2.92 16 29 H 0.08 3.10 7.57 -2.39 -0.02 3.08 16 30 H 0.10 3.38 8.11 -2.39 -0.02 3.36 16 31 H 0.26 15.56 8.32 -92.71 -0.77 14.79 16 32 H 0.12 4.17 6.96 -2.39 -0.02 4.15 16 33 H 0.08 3.24 6.72 -2.39 -0.02 3.23 16 34 H 0.12 3.20 8.14 -2.39 -0.02 3.18 16 35 H 0.12 2.91 8.14 -2.39 -0.02 2.89 16 36 H 0.08 2.65 8.14 -2.39 -0.02 2.63 16 Total: -1.00 -75.45 320.46 3.54 -71.91 By element: Atomic # 1 Polarization: 16.43 SS G_CDS: 1.08 Total: 17.51 kcal Atomic # 6 Polarization: -13.00 SS G_CDS: 5.15 Total: -7.84 kcal Atomic # 7 Polarization: -93.27 SS G_CDS: -3.37 Total: -96.64 kcal Atomic # 8 Polarization: -35.44 SS G_CDS: -0.04 Total: -35.48 kcal Atomic # 14 Polarization: 46.27 SS G_CDS: 2.03 Total: 48.30 kcal Atomic # 16 Polarization: 3.55 SS G_CDS: -1.31 Total: 2.24 kcal Total: -75.45 3.54 -71.91 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000345729471.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.232 kcal (2) G-P(sol) polarization free energy of solvation -75.453 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.779 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.541 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.913 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.320 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds