Wall clock time and date at job start Fri Apr 10 2020 17:16:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52995 * 109.47332 * 2 1 4 4 C 1.50701 * 109.47066 * 180.02562 * 3 2 1 5 5 N 1.29371 * 124.70494 * 89.97872 * 4 3 2 6 6 C 1.30935 * 117.47004 * 180.02562 * 5 4 3 7 7 C 1.36784 * 113.92087 * 359.97438 * 6 5 4 8 8 C 1.46562 * 126.17454 * 180.02562 * 7 6 5 9 9 O 1.21734 * 119.99486 * 153.41212 * 8 7 6 10 10 N 1.34767 * 120.00485 * 333.40934 * 8 7 6 11 11 C 1.36893 * 119.99876 * 184.00193 * 10 8 7 12 12 H 1.08003 * 119.99448 * 224.13417 * 11 10 8 13 13 C 1.39006 * 120.00570 * 44.13565 * 11 10 8 14 14 N 1.31400 * 119.99344 * 7.76703 * 13 11 10 15 15 Si 1.86797 * 120.00310 * 187.76707 * 13 11 10 16 16 H 1.48504 * 109.47016 * 59.99854 * 15 13 11 17 17 H 1.48499 * 109.46839 * 179.97438 * 15 13 11 18 18 H 1.48501 * 109.47288 * 300.00212 * 15 13 11 19 19 C 1.46500 * 120.00006 * 3.99578 * 10 8 7 20 20 C 1.53006 * 117.49877 * 181.60226 * 19 10 8 21 21 C 1.53004 * 117.49532 * 112.94322 * 19 10 8 22 22 S 1.70917 * 124.69907 * 269.99865 * 4 3 2 23 23 H 1.09009 * 109.46712 * 299.99741 * 1 2 3 24 24 H 1.08995 * 109.47367 * 59.99639 * 1 2 3 25 25 H 1.09000 * 109.47247 * 180.02562 * 1 2 3 26 26 H 1.08998 * 109.46390 * 239.99871 * 2 1 3 27 27 H 1.09003 * 109.47125 * 120.00514 * 2 1 3 28 28 H 1.09004 * 109.46746 * 60.00066 * 3 2 1 29 29 H 1.08995 * 109.47189 * 300.00470 * 3 2 1 30 30 H 1.08001 * 123.04047 * 180.02562 * 6 5 4 31 31 H 0.97001 * 119.99303 * 184.99523 * 14 13 11 32 32 H 1.09001 * 115.55315 * 327.27307 * 19 10 8 33 33 H 1.08998 * 117.49716 * 0.02562 * 20 19 10 34 34 H 1.08999 * 117.49409 * 145.02286 * 20 19 10 35 35 H 1.09005 * 117.49500 * 214.97888 * 21 19 10 36 36 H 1.08990 * 117.50047 * 0.02562 * 21 19 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 3.5471 1.4424 -0.0006 5 7 4.2832 1.4421 -1.0645 6 6 5.5822 1.4416 -0.9002 7 6 5.9755 1.4419 0.4099 8 6 7.3573 1.4420 0.8983 9 8 7.6170 1.9142 1.9899 10 7 8.3405 0.9193 0.1390 11 6 9.6169 0.8449 0.6282 12 1 10.4517 1.1271 0.0038 13 6 9.8385 0.4060 1.9284 14 7 8.8440 -0.0809 2.6359 15 14 11.5500 0.5084 2.6699 16 1 11.9977 1.9242 2.6878 17 1 11.5204 -0.0186 4.0579 18 1 12.4922 -0.2983 1.8534 19 6 8.0432 0.4308 -1.2097 20 6 9.1942 -0.1856 -2.0075 21 6 8.6517 1.1945 -2.3877 22 16 4.5206 1.4421 1.4042 23 1 -0.3633 0.5138 0.8901 24 1 -0.3634 0.5139 -0.8899 25 1 -0.3634 -1.0277 0.0005 26 1 1.8932 -0.5139 -0.8900 27 1 1.8933 -0.5139 0.8900 28 1 1.6767 1.9562 0.8900 29 1 1.6767 1.9563 -0.8899 30 1 6.2800 1.4417 -1.7244 31 1 8.9818 -0.3196 3.5659 32 1 7.0502 0.0027 -1.3465 33 1 10.1725 -0.2279 -1.5286 34 1 8.9582 -1.0189 -2.6693 35 1 8.0591 1.2684 -3.2996 36 1 9.2734 2.0600 -2.1591 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000358191262.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:16:48 Heat of formation + Delta-G solvation = 47.914080 kcal Electronic energy + Delta-G solvation = -19647.390122 eV Core-core repulsion = 16646.031878 eV Total energy + Delta-G solvation = -3001.358244 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 280.099 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -39.55647 -38.24176 -36.08656 -35.06312 -32.94152 -31.27033 -30.11640 -27.75681 -24.90091 -24.12767 -21.99606 -21.85401 -21.32729 -20.40485 -19.25391 -17.24133 -16.61763 -16.20809 -15.03269 -14.91694 -14.72160 -14.29611 -14.13150 -13.76409 -13.49647 -13.27964 -12.88499 -12.67185 -12.16403 -11.80282 -11.63870 -11.32361 -11.18883 -11.10147 -11.00603 -10.91404 -10.78155 -10.72317 -10.29299 -10.04913 -9.77134 -9.31540 -8.88736 -8.81083 -8.28853 -8.13536 -7.18550 -6.18125 -4.02755 0.95784 1.78437 2.31492 3.14107 3.25409 3.30647 3.31769 4.16296 4.27522 4.41079 4.76742 4.77945 4.92134 4.97151 5.11989 5.21656 5.46680 5.50359 5.55573 5.59072 5.66760 5.70546 5.73205 5.91930 5.96195 6.00246 6.09732 6.14947 6.21165 6.35358 6.60448 6.68519 6.83226 7.46583 8.10706 8.15650 8.88997 9.00487 9.46438 10.14402 10.84740 Molecular weight = 280.10amu Principal moments of inertia in cm(-1) A = 0.024204 B = 0.005241 C = 0.004602 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1156.552238 B = 5341.107284 C = 6083.055907 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.120 4.120 3 C -0.036 4.036 4 C 0.000 4.000 5 N -0.472 5.472 6 C 0.027 3.973 7 C -0.224 4.224 8 C 0.538 3.462 9 O -0.521 6.521 10 N -0.406 5.406 11 C -0.328 4.328 12 H 0.085 0.915 13 C 0.058 3.942 14 N -0.820 5.820 15 Si 0.919 3.081 16 H -0.273 1.273 17 H -0.284 1.284 18 H -0.275 1.275 19 C 0.057 3.943 20 C -0.171 4.171 21 C -0.207 4.207 22 S 0.188 5.812 23 H 0.055 0.945 24 H 0.055 0.945 25 H 0.055 0.945 26 H 0.068 0.932 27 H 0.065 0.935 28 H 0.080 0.920 29 H 0.088 0.912 30 H 0.188 0.812 31 H 0.268 0.732 32 H 0.115 0.885 33 H 0.108 0.892 34 H 0.087 0.913 35 H 0.089 0.911 36 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.899 -0.289 -6.261 12.572 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.159 4.159 3 C -0.077 4.077 4 C -0.275 4.275 5 N -0.186 5.186 6 C -0.129 4.129 7 C -0.349 4.349 8 C 0.325 3.675 9 O -0.399 6.399 10 N -0.126 5.126 11 C -0.456 4.456 12 H 0.102 0.898 13 C -0.154 4.154 14 N -0.454 5.454 15 Si 0.746 3.254 16 H -0.199 1.199 17 H -0.209 1.209 18 H -0.200 1.200 19 C -0.049 4.049 20 C -0.209 4.209 21 C -0.246 4.246 22 S 0.445 5.555 23 H 0.074 0.926 24 H 0.074 0.926 25 H 0.074 0.926 26 H 0.087 0.913 27 H 0.084 0.916 28 H 0.099 0.901 29 H 0.107 0.893 30 H 0.204 0.796 31 H 0.079 0.921 32 H 0.132 0.868 33 H 0.126 0.874 34 H 0.105 0.895 35 H 0.107 0.893 36 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -11.314 -0.174 -4.905 12.333 hybrid contribution 1.483 -0.059 -0.409 1.540 sum -9.831 -0.233 -5.315 11.178 Atomic orbital electron populations 1.21761 0.95328 1.01798 1.01858 1.21543 0.95786 0.95580 1.02975 1.20186 0.85567 0.98290 1.03653 1.27110 1.01197 1.06745 0.92428 1.65972 1.05214 1.15633 1.31781 1.22911 0.90714 1.03330 0.95898 1.26779 1.00366 1.11227 0.96548 1.16376 0.81588 0.82987 0.86541 1.90672 1.82174 1.46672 1.20412 1.42496 1.07903 1.51659 1.10552 1.18996 0.82418 1.45082 0.99081 0.89783 1.25367 0.98285 0.94127 0.97573 1.69854 1.31922 1.35064 1.08559 0.86152 0.82384 0.78677 0.78226 1.19881 1.20938 1.20007 1.22202 0.97173 1.01608 0.83903 1.23132 1.00308 0.95080 1.02382 1.23407 1.05430 0.96493 0.99237 1.83878 0.96007 1.65192 1.10454 0.92623 0.92584 0.92554 0.91304 0.91633 0.90112 0.89332 0.79584 0.92136 0.86759 0.87389 0.89465 0.89305 0.88749 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.24 9.91 37.16 0.37 -0.87 16 2 C -0.12 -1.28 5.92 -26.73 -0.16 -1.44 16 3 C -0.04 -0.43 5.79 -27.88 -0.16 -0.59 16 4 C 0.00 0.00 6.63 -13.31 -0.09 -0.08 16 5 N -0.47 -8.51 10.50 -11.25 -0.12 -8.63 16 6 C 0.03 0.51 9.24 -18.46 -0.17 0.34 16 7 C -0.22 -4.96 6.16 -36.75 -0.23 -5.18 16 8 C 0.54 14.27 6.76 -12.91 -0.09 14.18 16 9 O -0.52 -15.77 14.63 5.16 0.08 -15.69 16 10 N -0.41 -10.26 2.85 -109.23 -0.31 -10.57 16 11 C -0.33 -8.77 8.01 -15.01 -0.12 -8.89 16 12 H 0.08 2.13 7.12 -52.48 -0.37 1.76 16 13 C 0.06 1.59 4.72 -17.45 -0.08 1.51 16 14 N -0.82 -24.06 11.08 55.50 0.61 -23.45 16 15 Si 0.92 21.22 29.56 -169.99 -5.03 16.19 16 16 H -0.27 -6.34 7.11 56.52 0.40 -5.94 16 17 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 18 H -0.27 -6.03 7.11 56.52 0.40 -5.62 16 19 C 0.06 1.15 4.44 -67.92 -0.30 0.85 16 20 C -0.17 -3.01 9.80 -26.69 -0.26 -3.27 16 21 C -0.21 -3.46 9.69 -26.69 -0.26 -3.72 16 22 S 0.19 3.51 23.11 -107.50 -2.48 1.03 16 23 H 0.05 0.42 8.14 -51.92 -0.42 -0.01 16 24 H 0.06 0.43 8.14 -51.93 -0.42 0.00 16 25 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 26 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 27 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 28 H 0.08 0.82 8.14 -51.93 -0.42 0.39 16 29 H 0.09 0.98 8.14 -51.93 -0.42 0.56 16 30 H 0.19 3.34 4.87 -52.49 -0.26 3.08 16 31 H 0.27 7.55 8.32 -40.82 -0.34 7.21 16 32 H 0.12 2.21 5.49 -51.93 -0.28 1.92 16 33 H 0.11 2.06 6.68 -51.93 -0.35 1.71 16 34 H 0.09 1.30 8.14 -51.93 -0.42 0.88 16 35 H 0.09 1.23 8.14 -51.93 -0.42 0.81 16 36 H 0.09 1.67 8.14 -51.93 -0.42 1.25 16 LS Contribution 314.00 15.07 4.73 4.73 Total: -1.00 -32.32 314.00 -8.69 -41.01 By element: Atomic # 1 Polarization: 7.16 SS G_CDS: -4.62 Total: 2.54 kcal Atomic # 6 Polarization: -5.62 SS G_CDS: -1.55 Total: -7.17 kcal Atomic # 7 Polarization: -42.84 SS G_CDS: 0.19 Total: -42.65 kcal Atomic # 8 Polarization: -15.77 SS G_CDS: 0.08 Total: -15.69 kcal Atomic # 14 Polarization: 21.22 SS G_CDS: -5.03 Total: 16.19 kcal Atomic # 16 Polarization: 3.51 SS G_CDS: -2.48 Total: 1.03 kcal Total LS contribution 4.73 Total: 4.73 kcal Total: -32.32 -8.69 -41.01 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000358191262.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.928 kcal (2) G-P(sol) polarization free energy of solvation -32.325 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 56.603 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.689 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.014 kcal (6) G-S(sol) free energy of system = (1) + (5) 47.914 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds