Wall clock time and date at job start Fri Apr 10 2020 17:16:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52995 * 109.47332 * 2 1 4 4 C 1.50701 * 109.47066 * 180.02562 * 3 2 1 5 5 N 1.29371 * 124.70494 * 89.97872 * 4 3 2 6 6 C 1.30935 * 117.47004 * 180.02562 * 5 4 3 7 7 C 1.36784 * 113.92087 * 359.97438 * 6 5 4 8 8 C 1.46562 * 126.17454 * 180.02562 * 7 6 5 9 9 O 1.21734 * 119.99486 * 153.41212 * 8 7 6 10 10 N 1.34767 * 120.00485 * 333.40934 * 8 7 6 11 11 C 1.36893 * 119.99876 * 184.00193 * 10 8 7 12 12 H 1.08003 * 119.99448 * 224.13417 * 11 10 8 13 13 C 1.39006 * 120.00570 * 44.13565 * 11 10 8 14 14 N 1.31400 * 119.99344 * 7.76703 * 13 11 10 15 15 Si 1.86797 * 120.00310 * 187.76707 * 13 11 10 16 16 H 1.48504 * 109.47016 * 59.99854 * 15 13 11 17 17 H 1.48499 * 109.46839 * 179.97438 * 15 13 11 18 18 H 1.48501 * 109.47288 * 300.00212 * 15 13 11 19 19 C 1.46500 * 120.00006 * 3.99578 * 10 8 7 20 20 C 1.53006 * 117.49877 * 181.60226 * 19 10 8 21 21 C 1.53004 * 117.49532 * 112.94322 * 19 10 8 22 22 S 1.70917 * 124.69907 * 269.99865 * 4 3 2 23 23 H 1.09009 * 109.46712 * 299.99741 * 1 2 3 24 24 H 1.08995 * 109.47367 * 59.99639 * 1 2 3 25 25 H 1.09000 * 109.47247 * 180.02562 * 1 2 3 26 26 H 1.08998 * 109.46390 * 239.99871 * 2 1 3 27 27 H 1.09003 * 109.47125 * 120.00514 * 2 1 3 28 28 H 1.09004 * 109.46746 * 60.00066 * 3 2 1 29 29 H 1.08995 * 109.47189 * 300.00470 * 3 2 1 30 30 H 1.08001 * 123.04047 * 180.02562 * 6 5 4 31 31 H 0.97001 * 119.99303 * 184.99523 * 14 13 11 32 32 H 1.09001 * 115.55315 * 327.27307 * 19 10 8 33 33 H 1.08998 * 117.49716 * 0.02562 * 20 19 10 34 34 H 1.08999 * 117.49409 * 145.02286 * 20 19 10 35 35 H 1.09005 * 117.49500 * 214.97888 * 21 19 10 36 36 H 1.08990 * 117.50047 * 0.02562 * 21 19 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 3.5471 1.4424 -0.0006 5 7 4.2832 1.4421 -1.0645 6 6 5.5822 1.4416 -0.9002 7 6 5.9755 1.4419 0.4099 8 6 7.3573 1.4420 0.8983 9 8 7.6170 1.9142 1.9899 10 7 8.3405 0.9193 0.1390 11 6 9.6169 0.8449 0.6282 12 1 10.4517 1.1271 0.0038 13 6 9.8385 0.4060 1.9284 14 7 8.8440 -0.0809 2.6359 15 14 11.5500 0.5084 2.6699 16 1 11.9977 1.9242 2.6878 17 1 11.5204 -0.0186 4.0579 18 1 12.4922 -0.2983 1.8534 19 6 8.0432 0.4308 -1.2097 20 6 9.1942 -0.1856 -2.0075 21 6 8.6517 1.1945 -2.3877 22 16 4.5206 1.4421 1.4042 23 1 -0.3633 0.5138 0.8901 24 1 -0.3634 0.5139 -0.8899 25 1 -0.3634 -1.0277 0.0005 26 1 1.8932 -0.5139 -0.8900 27 1 1.8933 -0.5139 0.8900 28 1 1.6767 1.9562 0.8900 29 1 1.6767 1.9563 -0.8899 30 1 6.2800 1.4417 -1.7244 31 1 8.9818 -0.3196 3.5659 32 1 7.0502 0.0027 -1.3465 33 1 10.1725 -0.2279 -1.5286 34 1 8.9582 -1.0189 -2.6693 35 1 8.0591 1.2684 -3.2996 36 1 9.2734 2.0600 -2.1591 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000358191262.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:16:44 Heat of formation + Delta-G solvation = 27.522498 kcal Electronic energy + Delta-G solvation = -19648.274367 eV Core-core repulsion = 16646.031878 eV Total energy + Delta-G solvation = -3002.242490 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 280.099 amu Computer time = 4.12 seconds Orbital eigenvalues (eV) -41.15680 -39.90075 -37.82189 -36.04174 -34.86872 -33.07975 -31.56379 -29.04587 -26.78632 -25.47141 -23.50964 -23.18367 -22.42850 -22.12017 -20.83861 -18.76368 -18.39880 -17.89229 -16.74730 -16.38967 -16.00850 -15.70950 -15.65919 -15.22470 -14.97461 -14.78325 -14.52960 -13.84854 -13.66098 -13.05917 -12.94287 -12.84815 -12.77762 -12.56821 -12.53952 -12.27212 -12.14153 -12.06943 -11.66228 -11.60206 -11.30720 -10.91381 -10.71005 -10.37568 -10.12589 -9.71726 -9.11788 -8.20593 -6.10993 -0.55101 0.28375 0.82734 1.37908 1.44139 1.49466 1.64644 2.28290 2.56493 3.01386 3.03637 3.15244 3.33901 3.92324 3.96708 4.05399 4.12071 4.12627 4.22774 4.37811 4.39536 4.60583 4.71729 4.81461 4.84489 4.95205 4.97988 5.12049 5.20515 5.26990 5.31661 5.38695 5.44185 5.47064 6.10103 6.65790 6.90418 7.06913 7.51662 8.21039 8.81862 Molecular weight = 280.10amu Principal moments of inertia in cm(-1) A = 0.024204 B = 0.005241 C = 0.004602 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1156.552238 B = 5341.107284 C = 6083.055907 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.117 4.117 3 C -0.039 4.039 4 C 0.040 3.960 5 N -0.485 5.485 6 C 0.058 3.942 7 C -0.281 4.281 8 C 0.530 3.470 9 O -0.579 6.579 10 N -0.421 5.421 11 C -0.344 4.344 12 H 0.091 0.909 13 C 0.005 3.995 14 N -0.865 5.865 15 Si 0.982 3.018 16 H -0.277 1.277 17 H -0.287 1.287 18 H -0.252 1.252 19 C 0.022 3.978 20 C -0.163 4.163 21 C -0.177 4.177 22 S 0.181 5.819 23 H 0.065 0.935 24 H 0.065 0.935 25 H 0.062 0.938 26 H 0.058 0.942 27 H 0.058 0.942 28 H 0.105 0.895 29 H 0.108 0.892 30 H 0.201 0.799 31 H 0.261 0.739 32 H 0.122 0.878 33 H 0.088 0.912 34 H 0.120 0.880 35 H 0.129 0.871 36 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.562 -0.388 -8.554 15.202 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.157 4.157 3 C -0.080 4.080 4 C -0.236 4.236 5 N -0.199 5.199 6 C -0.098 4.098 7 C -0.405 4.405 8 C 0.318 3.682 9 O -0.461 6.461 10 N -0.140 5.140 11 C -0.472 4.472 12 H 0.108 0.892 13 C -0.201 4.201 14 N -0.500 5.500 15 Si 0.806 3.194 16 H -0.202 1.202 17 H -0.213 1.213 18 H -0.176 1.176 19 C -0.082 4.082 20 C -0.200 4.200 21 C -0.216 4.216 22 S 0.439 5.561 23 H 0.084 0.916 24 H 0.084 0.916 25 H 0.081 0.919 26 H 0.077 0.923 27 H 0.076 0.924 28 H 0.123 0.877 29 H 0.126 0.874 30 H 0.218 0.782 31 H 0.070 0.930 32 H 0.139 0.861 33 H 0.107 0.893 34 H 0.138 0.862 35 H 0.147 0.853 36 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -12.953 -0.292 -7.251 14.847 hybrid contribution 1.782 0.003 0.161 1.790 sum -11.171 -0.289 -7.089 13.234 Atomic orbital electron populations 1.21727 0.93028 1.02614 1.02872 1.21531 0.97719 0.94239 1.02197 1.20538 0.81978 0.99735 1.05767 1.28045 1.02912 1.01796 0.90840 1.66137 1.04513 1.17386 1.31876 1.23125 0.91504 1.00014 0.95132 1.26338 0.99466 1.16451 0.98277 1.16934 0.83396 0.81903 0.85949 1.90603 1.83585 1.49146 1.22786 1.42682 1.07368 1.51547 1.12369 1.19301 0.83573 1.44816 0.99509 0.89165 1.26285 1.01823 0.93821 0.98199 1.70000 1.34123 1.37544 1.08333 0.85195 0.78370 0.78505 0.77377 1.20212 1.21295 1.17648 1.22397 0.98646 1.04748 0.82435 1.23210 0.98246 0.96879 1.01665 1.23444 1.04090 0.95464 0.98565 1.83842 0.95241 1.65477 1.11569 0.91591 0.91609 0.91926 0.92274 0.92366 0.87711 0.87426 0.78240 0.92975 0.86055 0.89318 0.86163 0.85300 0.90007 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.88 9.91 71.98 0.71 -1.16 16 2 C -0.12 -2.17 5.92 30.59 0.18 -1.99 16 3 C -0.04 -0.80 5.79 29.85 0.17 -0.62 16 4 C 0.04 1.20 6.63 88.47 0.59 1.78 16 5 N -0.48 -16.42 10.50 -189.51 -1.99 -18.41 16 6 C 0.06 2.20 9.24 84.49 0.78 2.98 16 7 C -0.28 -12.64 6.16 24.10 0.15 -12.49 16 8 C 0.53 29.25 6.76 86.42 0.58 29.84 16 9 O -0.58 -37.03 14.63 -4.46 -0.07 -37.09 16 10 N -0.42 -21.85 2.85 -617.70 -1.76 -23.61 16 11 C -0.34 -18.98 8.01 84.09 0.67 -18.30 16 12 H 0.09 4.68 7.12 -2.91 -0.02 4.66 16 13 C 0.00 0.28 4.72 84.94 0.40 0.68 16 14 N -0.86 -53.33 11.08 21.67 0.24 -53.09 16 15 Si 0.98 44.95 29.56 68.60 2.03 46.98 16 16 H -0.28 -12.64 7.11 99.48 0.71 -11.93 16 17 H -0.29 -13.14 7.11 99.48 0.71 -12.43 16 18 H -0.25 -10.50 7.11 99.48 0.71 -9.79 16 19 C 0.02 0.89 4.44 45.00 0.20 1.09 16 20 C -0.16 -5.42 9.80 30.62 0.30 -5.12 16 21 C -0.18 -5.51 9.69 30.62 0.30 -5.22 16 22 S 0.18 6.76 23.11 -56.49 -1.31 5.46 16 23 H 0.07 0.74 8.14 -2.38 -0.02 0.72 16 24 H 0.06 0.75 8.14 -2.39 -0.02 0.73 16 25 H 0.06 0.76 8.14 -2.39 -0.02 0.74 16 26 H 0.06 1.22 8.14 -2.39 -0.02 1.20 16 27 H 0.06 1.17 8.14 -2.39 -0.02 1.15 16 28 H 0.10 1.70 8.14 -2.39 -0.02 1.68 16 29 H 0.11 1.90 8.14 -2.39 -0.02 1.88 16 30 H 0.20 6.78 4.87 -2.91 -0.01 6.77 16 31 H 0.26 15.56 8.32 -92.71 -0.77 14.79 16 32 H 0.12 4.57 5.49 -2.39 -0.01 4.56 16 33 H 0.09 3.33 6.68 -2.39 -0.02 3.31 16 34 H 0.12 3.19 8.14 -2.39 -0.02 3.17 16 35 H 0.13 3.00 8.14 -2.38 -0.02 2.98 16 36 H 0.08 2.78 8.14 -2.39 -0.02 2.77 16 Total: -1.00 -74.63 314.00 3.27 -71.36 By element: Atomic # 1 Polarization: 15.85 SS G_CDS: 1.09 Total: 16.94 kcal Atomic # 6 Polarization: -13.58 SS G_CDS: 5.04 Total: -8.54 kcal Atomic # 7 Polarization: -91.59 SS G_CDS: -3.51 Total: -95.10 kcal Atomic # 8 Polarization: -37.03 SS G_CDS: -0.07 Total: -37.09 kcal Atomic # 14 Polarization: 44.95 SS G_CDS: 2.03 Total: 46.98 kcal Atomic # 16 Polarization: 6.76 SS G_CDS: -1.31 Total: 5.46 kcal Total: -74.63 3.27 -71.36 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000358191262.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 98.880 kcal (2) G-P(sol) polarization free energy of solvation -74.632 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.248 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.275 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.357 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.522 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 4.12 seconds