Wall clock time and date at job start Fri Apr 10 2020 17:16:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31004 * 1 3 3 C 1.50698 * 120.00001 * 2 1 4 4 N 1.46500 * 109.47079 * 124.99960 * 3 2 1 5 5 C 1.46493 * 120.00014 * 270.00002 * 4 3 2 6 6 C 1.50710 * 109.47041 * 269.99852 * 5 4 3 7 7 H 1.08000 * 119.99645 * 0.02562 * 6 5 4 8 8 C 1.37874 * 120.00220 * 179.97438 * 6 5 4 9 9 N 1.31521 * 120.00080 * 0.02562 * 8 6 5 10 10 Si 1.86794 * 120.00452 * 180.02562 * 8 6 5 11 11 H 1.48503 * 109.47131 * 89.99770 * 10 8 6 12 12 H 1.48495 * 109.47426 * 210.00305 * 10 8 6 13 13 H 1.48505 * 109.46726 * 330.00088 * 10 8 6 14 14 C 1.34772 * 119.99692 * 89.99860 * 4 3 2 15 15 O 1.21283 * 119.99927 * 179.97438 * 14 4 3 16 16 C 1.50694 * 120.00468 * 359.97438 * 14 4 3 17 17 C 1.50700 * 109.47477 * 179.97438 * 16 14 4 18 18 N 1.29029 * 124.91704 * 89.97545 * 17 16 14 19 19 C 1.31778 * 117.12461 * 180.02562 * 18 17 16 20 20 C 1.33641 * 114.50181 * 0.02562 * 19 18 17 21 21 C 1.50703 * 126.03730 * 179.97438 * 20 19 18 22 22 S 1.70982 * 124.91788 * 270.29195 * 17 16 14 23 23 H 1.08002 * 120.00210 * 180.02562 * 1 2 3 24 24 H 1.08005 * 119.99799 * 359.97438 * 1 2 3 25 25 H 1.07992 * 119.99708 * 179.97438 * 2 1 3 26 26 H 1.08996 * 109.47166 * 4.99835 * 3 2 1 27 27 H 1.09001 * 109.46872 * 245.00056 * 3 2 1 28 28 H 1.08998 * 109.47287 * 29.99511 * 5 4 3 29 29 H 1.09000 * 109.47228 * 150.00410 * 5 4 3 30 30 H 0.96998 * 120.00437 * 179.97438 * 9 8 6 31 31 H 1.09005 * 109.46862 * 59.99853 * 16 14 4 32 32 H 1.09001 * 109.47506 * 300.00182 * 16 14 4 33 33 H 1.07996 * 122.74805 * 179.97438 * 19 18 17 34 34 H 1.09002 * 109.47152 * 90.00002 * 21 20 19 35 35 H 1.09001 * 109.46980 * 330.00102 * 21 20 19 36 36 H 1.09004 * 109.47113 * 210.00083 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 2.9938 1.3319 1.1314 5 6 2.5589 1.8649 2.4248 6 6 2.8443 3.3437 2.4803 7 1 3.3034 3.8370 1.6364 8 6 2.5185 4.0668 3.6081 9 7 1.9590 3.4661 4.6356 10 14 2.8717 5.8998 3.6767 11 1 1.6987 6.6496 3.1596 12 1 3.1353 6.3009 5.0820 13 1 4.0618 6.2061 2.8430 14 6 4.2496 0.8661 0.9823 15 8 5.0200 0.8887 1.9189 16 6 4.6969 0.3172 -0.3479 17 6 6.1315 -0.1333 -0.2488 18 7 6.5115 -1.3190 0.0897 19 6 7.8090 -1.5463 0.1271 20 6 8.5657 -0.4936 -0.1975 21 6 10.0718 -0.4636 -0.2394 22 16 7.4915 0.8547 -0.5613 23 1 -0.5400 -0.9353 0.0004 24 1 -0.5400 0.9354 0.0004 25 1 1.8500 -0.9353 0.0004 26 1 1.3586 2.1316 0.0895 27 1 2.6213 1.4026 -0.9314 28 1 1.4888 1.6967 2.5458 29 1 3.0990 1.3603 3.2259 30 1 1.7301 3.9747 5.4292 31 1 4.6119 1.0936 -1.1083 32 1 4.0677 -0.5297 -0.6216 33 1 8.2267 -2.5045 0.3986 34 1 10.4133 -0.7448 -1.2357 35 1 10.4698 -1.1662 0.4928 36 1 10.4218 0.5419 -0.0058 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000359439953.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:16:59 Heat of formation + Delta-G solvation = 4.142128 kcal Electronic energy + Delta-G solvation = -19197.480030 eV Core-core repulsion = 16194.223691 eV Total energy + Delta-G solvation = -3003.256338 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 280.099 amu Computer time = 1.95 seconds Orbital eigenvalues (eV) -41.11822 -40.25017 -37.24740 -35.18048 -34.21798 -33.66913 -31.87481 -29.46138 -27.11975 -26.78127 -25.19692 -24.17020 -21.33636 -20.52615 -19.86637 -18.98864 -18.63168 -17.98685 -17.30561 -16.37565 -16.31952 -15.91538 -15.71878 -15.35420 -14.78018 -14.45306 -14.33046 -14.11698 -14.01925 -13.56755 -13.49045 -13.31240 -13.03537 -12.96679 -12.78890 -12.56586 -12.23286 -12.18144 -12.08948 -11.67340 -10.79268 -10.64168 -10.61777 -10.30211 -10.15028 -9.68337 -9.49070 -8.21817 -6.36605 -0.30186 0.39514 0.78180 1.33371 1.37166 1.40147 1.50290 1.75529 1.82210 2.35151 2.51679 3.08243 3.14252 3.65898 3.96349 4.03970 4.10084 4.25252 4.27017 4.31243 4.47448 4.51677 4.73631 4.86621 4.89518 4.99868 5.04818 5.07822 5.22810 5.29957 5.51570 5.73918 5.76415 5.96184 6.06071 6.66794 6.74867 6.78147 7.26910 7.42551 8.85688 Molecular weight = 280.10amu Principal moments of inertia in cm(-1) A = 0.015270 B = 0.005236 C = 0.004213 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1833.230367 B = 5346.521746 C = 6644.946733 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.186 4.186 3 C 0.130 3.870 4 N -0.595 5.595 5 C 0.266 3.734 6 C -0.541 4.541 7 H 0.057 0.943 8 C 0.007 3.993 9 N -0.930 5.930 10 Si 0.968 3.032 11 H -0.262 1.262 12 H -0.283 1.283 13 H -0.271 1.271 14 C 0.505 3.495 15 O -0.588 6.588 16 C -0.057 4.057 17 C 0.046 3.954 18 N -0.494 5.494 19 C 0.010 3.990 20 C -0.220 4.220 21 C -0.073 4.073 22 S 0.134 5.866 23 H 0.114 0.886 24 H 0.100 0.900 25 H 0.113 0.887 26 H 0.081 0.919 27 H 0.113 0.887 28 H 0.022 0.978 29 H -0.008 1.008 30 H 0.266 0.734 31 H 0.144 0.856 32 H 0.140 0.860 33 H 0.195 0.805 34 H 0.097 0.903 35 H 0.094 0.906 36 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.016 -7.029 -16.501 19.645 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.205 4.205 3 C 0.008 3.992 4 N -0.325 5.325 5 C 0.144 3.856 6 C -0.579 4.579 7 H 0.076 0.924 8 C -0.192 4.192 9 N -0.570 5.570 10 Si 0.792 3.208 11 H -0.187 1.187 12 H -0.209 1.209 13 H -0.196 1.196 14 C 0.292 3.708 15 O -0.469 6.469 16 C -0.100 4.100 17 C -0.232 4.232 18 N -0.208 5.208 19 C -0.140 4.140 20 C -0.341 4.341 21 C -0.132 4.132 22 S 0.389 5.611 23 H 0.132 0.868 24 H 0.119 0.881 25 H 0.131 0.869 26 H 0.100 0.900 27 H 0.131 0.869 28 H 0.040 0.960 29 H 0.011 0.989 30 H 0.075 0.925 31 H 0.161 0.839 32 H 0.157 0.843 33 H 0.212 0.788 34 H 0.115 0.885 35 H 0.113 0.887 36 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 8.037 -6.328 -16.018 19.006 hybrid contribution 0.125 -0.073 1.110 1.120 sum 8.162 -6.401 -14.908 18.162 Atomic orbital electron populations 1.24050 0.95559 1.02863 0.98228 1.23348 0.96859 0.98365 1.01946 1.20924 0.92849 0.96390 0.89046 1.48165 1.11350 1.59632 1.13353 1.18695 0.93819 0.92803 0.80253 1.21707 1.40513 0.94206 1.01497 0.92447 1.25869 0.94666 1.03799 0.94831 1.70067 1.42933 1.38135 1.05829 0.85413 0.78966 0.79053 0.77381 1.18661 1.20890 1.19576 1.20842 0.81889 0.77771 0.90330 1.90670 1.54104 1.58079 1.44038 1.20376 0.89415 1.04360 0.95811 1.26296 1.00702 0.92553 1.03606 1.66159 1.18297 1.20732 1.15620 1.22030 0.86659 1.01553 1.03799 1.26480 1.03189 0.94954 1.09507 1.20385 0.84046 1.04116 1.04638 1.83784 0.98265 1.16092 1.62948 0.86751 0.88143 0.86947 0.90009 0.86904 0.95972 0.98942 0.92478 0.83864 0.84259 0.78844 0.88463 0.88743 0.90647 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.03 14.32 67.78 0.97 -3.06 16 2 C -0.19 -4.95 9.74 25.64 0.25 -4.70 16 3 C 0.13 3.93 5.65 85.63 0.48 4.41 16 4 N -0.59 -25.31 2.44 -830.52 -2.03 -27.33 16 5 C 0.27 14.54 5.16 85.64 0.44 14.98 16 6 C -0.54 -31.18 9.39 25.60 0.24 -30.94 16 7 H 0.06 3.23 7.81 -2.91 -0.02 3.21 16 8 C 0.01 0.41 5.46 84.65 0.46 0.88 16 9 N -0.93 -56.90 13.29 21.45 0.28 -56.61 16 10 Si 0.97 44.93 29.54 68.60 2.03 46.96 16 11 H -0.26 -11.33 7.11 99.48 0.71 -10.62 16 12 H -0.28 -12.98 7.11 99.48 0.71 -12.28 16 13 H -0.27 -12.36 7.11 99.48 0.71 -11.65 16 14 C 0.50 21.48 7.66 87.66 0.67 22.15 16 15 O -0.59 -31.68 15.61 -3.04 -0.05 -31.73 16 16 C -0.06 -1.69 4.84 29.10 0.14 -1.55 16 17 C 0.05 1.48 5.88 88.52 0.52 2.00 16 18 N -0.49 -16.64 10.54 -191.45 -2.02 -18.65 16 19 C 0.01 0.27 11.25 83.66 0.94 1.21 16 20 C -0.22 -5.32 6.60 24.64 0.16 -5.16 16 21 C -0.07 -1.09 10.42 71.24 0.74 -0.35 16 22 S 0.13 3.72 23.18 -56.49 -1.31 2.42 16 23 H 0.11 2.27 8.06 -2.91 -0.02 2.24 16 24 H 0.10 2.36 7.84 -2.91 -0.02 2.34 16 25 H 0.11 2.84 7.83 -2.91 -0.02 2.81 16 26 H 0.08 2.60 7.72 -2.39 -0.02 2.58 16 27 H 0.11 2.50 6.44 -2.39 -0.02 2.49 16 28 H 0.02 1.24 8.07 -2.39 -0.02 1.22 16 29 H -0.01 -0.49 7.42 -2.39 -0.02 -0.50 16 30 H 0.27 15.28 8.31 -92.71 -0.77 14.51 16 31 H 0.14 3.15 7.40 -2.38 -0.02 3.13 16 32 H 0.14 3.45 7.77 -2.39 -0.02 3.43 16 33 H 0.19 4.08 8.06 -2.91 -0.02 4.06 16 34 H 0.10 1.06 8.14 -2.39 -0.02 1.04 16 35 H 0.09 1.15 8.14 -2.39 -0.02 1.13 16 36 H 0.07 1.09 8.14 -2.38 -0.02 1.07 16 Total: -1.00 -78.88 329.44 4.01 -74.87 By element: Atomic # 1 Polarization: 9.13 SS G_CDS: 1.07 Total: 10.20 kcal Atomic # 6 Polarization: -6.14 SS G_CDS: 6.03 Total: -0.11 kcal Atomic # 7 Polarization: -98.84 SS G_CDS: -3.76 Total: -102.60 kcal Atomic # 8 Polarization: -31.68 SS G_CDS: -0.05 Total: -31.73 kcal Atomic # 14 Polarization: 44.93 SS G_CDS: 2.03 Total: 46.96 kcal Atomic # 16 Polarization: 3.72 SS G_CDS: -1.31 Total: 2.42 kcal Total: -78.88 4.01 -74.87 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000359439953.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.012 kcal (2) G-P(sol) polarization free energy of solvation -78.876 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.135 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.007 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.869 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.142 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.95 seconds