Wall clock time and date at job start Fri Apr 10 2020 17:17:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53003 * 109.47354 * 2 1 4 4 N 1.46494 * 109.47138 * 179.97438 * 3 2 1 5 5 C 1.36770 * 119.99872 * 268.20540 * 4 3 2 6 6 H 1.08000 * 119.99771 * 187.39089 * 5 4 3 7 7 C 1.39081 * 120.00059 * 7.39018 * 5 4 3 8 8 N 1.31332 * 120.00307 * 26.77215 * 7 5 4 9 9 Si 1.86800 * 119.99996 * 206.77032 * 7 5 4 10 10 H 1.48508 * 109.46965 * 60.00007 * 9 7 5 11 11 H 1.48497 * 109.47471 * 179.97438 * 9 7 5 12 12 H 1.48497 * 109.47438 * 300.00128 * 9 7 5 13 13 C 1.34781 * 120.00266 * 88.20575 * 4 3 2 14 14 O 1.21672 * 120.00299 * 172.89826 * 13 4 3 15 15 C 1.47081 * 119.99616 * 353.17491 * 13 4 3 16 16 N 1.29858 * 125.52694 * 354.46683 * 15 13 4 17 17 C 1.32610 * 116.72517 * 179.78873 * 16 15 13 18 18 C 1.34632 * 114.31774 * 0.48434 * 17 16 15 19 19 S 1.71623 * 109.61375 * 359.77287 * 18 17 16 20 20 C 1.51946 * 110.68238 * 179.79031 * 18 17 16 21 21 C 1.54234 * 104.84631 * 17.40250 * 20 18 17 22 22 C 1.52798 * 136.14425 * 180.08686 * 17 16 15 23 23 H 1.09002 * 109.47424 * 180.02562 * 1 2 3 24 24 H 1.08999 * 109.47373 * 300.00272 * 1 2 3 25 25 H 1.08997 * 109.46997 * 60.00495 * 1 2 3 26 26 H 1.08999 * 109.47373 * 239.99728 * 2 1 3 27 27 H 1.09006 * 109.46914 * 119.99280 * 2 1 3 28 28 H 1.08999 * 109.47103 * 59.99563 * 3 2 1 29 29 H 1.08997 * 109.46664 * 299.99709 * 3 2 1 30 30 H 0.97000 * 120.00811 * 180.02562 * 8 7 5 31 31 H 1.08998 * 110.36331 * 136.24938 * 20 18 17 32 32 H 1.09000 * 110.36286 * 258.45035 * 20 18 17 33 33 H 1.09001 * 110.95020 * 91.61124 * 21 20 18 34 34 H 1.09005 * 110.95262 * 215.29244 * 21 20 18 35 35 H 1.08997 * 110.31585 * 43.91095 * 22 17 16 36 36 H 1.09004 * 110.31395 * 281.72061 * 22 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 7 3.5050 1.4425 0.0006 5 6 4.1883 1.4797 1.1848 6 1 5.2616 1.6000 1.1853 7 6 3.5011 1.3626 2.3883 8 7 2.3581 0.7172 2.4317 9 14 4.2037 2.1233 3.9429 10 1 4.3499 3.5891 3.7544 11 1 3.2868 1.8602 5.0810 12 1 5.5328 1.5261 4.2293 13 6 4.1795 1.4057 -1.1657 14 8 5.3892 1.5357 -1.1734 15 6 3.4524 1.2145 -2.4299 16 7 2.1818 0.9696 -2.5400 17 6 1.7055 0.8317 -3.7699 18 6 2.6303 0.9587 -4.7401 19 16 4.1639 1.2727 -4.0366 20 6 1.9983 0.7814 -6.1105 21 6 0.4854 0.9674 -5.8750 22 6 0.3413 0.5507 -4.3980 23 1 -0.3634 -1.0277 0.0005 24 1 -0.3634 0.5139 0.8899 25 1 -0.3633 0.5137 -0.8900 26 1 1.8934 -0.5139 -0.8899 27 1 1.8933 -0.5138 0.8901 28 1 1.6767 1.9564 0.8899 29 1 1.6768 1.9563 -0.8900 30 1 1.8785 0.6358 3.2709 31 1 2.3707 1.5384 -6.8007 32 1 2.2039 -0.2170 -6.4966 33 1 0.1940 2.0081 -6.0166 34 1 -0.0937 0.3106 -6.5242 35 1 -0.4300 1.1468 -3.9103 36 1 0.1028 -0.5105 -4.3258 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000414982852.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:17:54 Heat of formation + Delta-G solvation = 32.745637 kcal Electronic energy + Delta-G solvation = -20222.401745 eV Core-core repulsion = 17220.385748 eV Total energy + Delta-G solvation = -3002.015997 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 280.099 amu Computer time = 1.69 seconds Orbital eigenvalues (eV) -39.94637 -38.40884 -35.46586 -35.31039 -32.29181 -31.42186 -28.46707 -28.19349 -25.86214 -25.07354 -23.59836 -21.50936 -20.56207 -19.72347 -18.59460 -17.44542 -16.90022 -15.81883 -15.56517 -14.86575 -14.24443 -14.13015 -13.90055 -13.40091 -13.06464 -13.02682 -12.86807 -12.66726 -12.15105 -11.89607 -11.84727 -11.38852 -11.18352 -10.94578 -10.94078 -10.86795 -10.64287 -10.46896 -10.27811 -10.21237 -9.54400 -9.03380 -8.95891 -8.75366 -8.49626 -8.03882 -7.84485 -6.56142 -3.87391 0.94826 1.72814 2.40987 2.91689 3.15344 3.16217 3.22295 3.95228 4.14441 4.21007 4.63764 4.83091 4.94701 4.97691 5.06143 5.51752 5.58864 5.70781 5.71294 5.81442 5.89801 6.12989 6.14494 6.19044 6.24870 6.50143 6.53461 6.72684 6.95891 7.01427 7.12535 7.26434 7.50434 7.83751 7.94847 8.16530 8.38403 8.98893 9.21683 9.85719 10.34390 Molecular weight = 280.10amu Principal moments of inertia in cm(-1) A = 0.026054 B = 0.005925 C = 0.004952 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1074.450412 B = 4724.428678 C = 5653.030532 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.113 4.113 3 C 0.127 3.873 4 N -0.385 5.385 5 C -0.296 4.296 6 H 0.114 0.886 7 C 0.037 3.963 8 N -0.825 5.825 9 Si 0.927 3.073 10 H -0.270 1.270 11 H -0.281 1.281 12 H -0.269 1.269 13 C 0.475 3.525 14 O -0.597 6.597 15 C 0.058 3.942 16 N -0.435 5.435 17 C 0.041 3.959 18 C -0.308 4.308 19 S 0.180 5.820 20 C -0.029 4.029 21 C -0.116 4.116 22 C -0.038 4.038 23 H 0.034 0.966 24 H 0.045 0.955 25 H 0.037 0.963 26 H 0.039 0.961 27 H 0.098 0.902 28 H 0.081 0.919 29 H 0.063 0.937 30 H 0.275 0.725 31 H 0.071 0.929 32 H 0.077 0.923 33 H 0.074 0.926 34 H 0.081 0.919 35 H 0.078 0.922 36 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.660 -0.263 -10.793 12.685 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.151 4.151 3 C 0.004 3.996 4 N -0.098 5.098 5 C -0.427 4.427 6 H 0.131 0.869 7 C -0.172 4.172 8 N -0.461 5.461 9 Si 0.752 3.248 10 H -0.195 1.195 11 H -0.207 1.207 12 H -0.194 1.194 13 C 0.263 3.737 14 O -0.485 6.485 15 C -0.218 4.218 16 N -0.152 5.152 17 C -0.094 4.094 18 C -0.431 4.431 19 S 0.439 5.561 20 C -0.069 4.069 21 C -0.155 4.155 22 C -0.078 4.078 23 H 0.053 0.947 24 H 0.064 0.936 25 H 0.057 0.943 26 H 0.057 0.943 27 H 0.116 0.884 28 H 0.099 0.901 29 H 0.081 0.919 30 H 0.085 0.915 31 H 0.089 0.911 32 H 0.095 0.905 33 H 0.093 0.907 34 H 0.099 0.901 35 H 0.096 0.904 36 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -5.478 -0.117 -10.536 11.875 hybrid contribution -0.826 0.005 0.608 1.026 sum -6.304 -0.112 -9.928 11.761 Atomic orbital electron populations 1.21498 0.97757 0.99386 1.00011 1.21760 0.93643 0.97600 1.02119 1.21726 0.78797 0.98274 1.00810 1.43818 1.06702 1.55054 1.04271 1.19945 0.94677 1.46590 0.81485 0.86869 1.25449 0.96212 0.95660 0.99846 1.70169 1.15691 1.32293 1.27997 0.85987 0.79116 0.80227 0.79497 1.19523 1.20674 1.19373 1.16309 0.86172 0.89926 0.81317 1.90660 1.12652 1.59713 1.85456 1.27966 0.90979 1.04773 0.98068 1.66585 1.10873 1.15256 1.22522 1.21772 0.97959 1.02945 0.86773 1.26499 0.98881 1.14700 1.03010 1.83606 1.06462 1.65182 1.00832 1.20523 0.93846 1.01828 0.90657 1.22301 0.95356 1.02115 0.95723 1.20800 0.91553 1.01900 0.93562 0.94666 0.93579 0.94340 0.94258 0.88408 0.90108 0.91865 0.91459 0.91060 0.90471 0.90722 0.90085 0.90387 0.90069 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.40 9.91 37.16 0.37 -2.03 16 2 C -0.11 -2.52 5.16 -26.73 -0.14 -2.66 16 3 C 0.13 3.00 4.15 -4.04 -0.02 2.98 16 4 N -0.38 -10.13 2.62 -116.17 -0.30 -10.43 16 5 C -0.30 -8.01 9.43 -15.04 -0.14 -8.15 16 6 H 0.11 3.19 7.30 -52.49 -0.38 2.81 16 7 C 0.04 0.91 4.86 -17.45 -0.08 0.83 16 8 N -0.83 -20.07 8.31 55.50 0.46 -19.61 16 9 Si 0.93 19.34 29.63 -169.99 -5.04 14.30 16 10 H -0.27 -5.68 7.11 56.52 0.40 -5.28 16 11 H -0.28 -5.70 7.11 56.52 0.40 -5.30 16 12 H -0.27 -5.64 7.11 56.52 0.40 -5.24 16 13 C 0.47 12.53 7.59 -12.67 -0.10 12.43 16 14 O -0.60 -17.15 16.54 5.21 0.09 -17.07 16 15 C 0.06 1.31 7.03 -14.80 -0.10 1.21 16 16 N -0.44 -9.09 5.38 -6.81 -0.04 -9.12 16 17 C 0.04 0.72 7.62 -82.48 -0.63 0.09 16 18 C -0.31 -4.99 7.17 -34.97 -0.25 -5.25 16 19 S 0.18 3.36 23.03 -107.50 -2.48 0.88 16 20 C -0.03 -0.33 6.80 -26.62 -0.18 -0.51 16 21 C -0.12 -1.14 7.11 -25.49 -0.18 -1.32 16 22 C -0.04 -0.49 6.81 -26.24 -0.18 -0.67 16 23 H 0.03 0.60 8.14 -51.93 -0.42 0.18 16 24 H 0.05 0.85 8.14 -51.93 -0.42 0.43 16 25 H 0.04 0.67 8.14 -51.93 -0.42 0.25 16 26 H 0.04 0.91 6.55 -51.93 -0.34 0.57 16 27 H 0.10 2.43 5.87 -51.93 -0.30 2.12 16 28 H 0.08 1.98 6.14 -51.93 -0.32 1.66 16 29 H 0.06 1.46 5.75 -51.93 -0.30 1.16 16 30 H 0.27 6.25 8.31 -40.82 -0.34 5.92 16 31 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 32 H 0.08 0.80 8.14 -51.93 -0.42 0.38 16 33 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 34 H 0.08 0.60 8.14 -51.93 -0.42 0.18 16 35 H 0.08 0.95 8.14 -51.93 -0.42 0.53 16 36 H 0.08 0.96 8.14 -51.93 -0.42 0.54 16 LS Contribution 303.67 15.07 4.58 4.58 Total: -1.00 -29.09 303.67 -8.95 -38.04 By element: Atomic # 1 Polarization: 6.06 SS G_CDS: -4.58 Total: 1.47 kcal Atomic # 6 Polarization: -1.41 SS G_CDS: -1.63 Total: -3.05 kcal Atomic # 7 Polarization: -39.28 SS G_CDS: 0.12 Total: -39.16 kcal Atomic # 8 Polarization: -17.15 SS G_CDS: 0.09 Total: -17.07 kcal Atomic # 14 Polarization: 19.34 SS G_CDS: -5.04 Total: 14.30 kcal Atomic # 16 Polarization: 3.36 SS G_CDS: -2.48 Total: 0.88 kcal Total LS contribution 4.58 Total: 4.58 kcal Total: -29.09 -8.95 -38.04 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000414982852.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.788 kcal (2) G-P(sol) polarization free energy of solvation -29.094 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.693 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.948 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.042 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.746 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.69 seconds