Wall clock time and date at job start Fri Apr 10 2020 17:16:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42902 * 113.99950 * 2 1 4 4 C 1.52995 * 109.47170 * 179.97438 * 3 2 1 5 5 N 1.46504 * 109.47104 * 64.99921 * 4 3 2 6 6 C 1.34776 * 120.00056 * 180.02562 * 5 4 3 7 7 S 1.71203 * 119.99938 * 359.97438 * 6 5 4 8 8 N 1.34776 * 120.00035 * 180.02562 * 6 5 4 9 9 C 1.39131 * 119.99916 * 185.74402 * 8 6 5 10 10 C 1.39512 * 119.83882 * 40.96994 * 9 8 6 11 11 C 1.36357 * 120.17229 * 180.29335 * 10 9 8 12 12 C 1.40888 * 119.82406 * 359.46197 * 11 10 9 13 13 C 1.41144 * 120.15615 * 180.25309 * 12 11 10 14 14 H 1.07997 * 119.99571 * 205.37867 * 13 12 11 15 15 C 1.39886 * 120.00275 * 25.37820 * 13 12 11 16 16 N 1.30888 * 119.99701 * 16.81374 * 15 13 12 17 17 Si 1.86798 * 119.99898 * 196.80530 * 15 13 12 18 18 H 1.48502 * 109.46897 * 60.00791 * 17 15 13 19 19 H 1.48506 * 109.47115 * 180.02562 * 17 15 13 20 20 H 1.48494 * 109.47549 * 300.00683 * 17 15 13 21 21 C 1.40871 * 119.68018 * 0.53627 * 12 11 10 22 22 C 1.36360 * 119.82927 * 359.73416 * 21 12 11 23 23 H 1.09002 * 109.47113 * 60.00044 * 1 2 3 24 24 H 1.09001 * 109.47024 * 179.97438 * 1 2 3 25 25 H 1.08997 * 109.47616 * 299.99744 * 1 2 3 26 26 H 1.09003 * 109.46969 * 59.99931 * 3 2 1 27 27 H 1.08993 * 109.46897 * 300.00009 * 3 2 1 28 28 H 1.09008 * 109.47189 * 305.00000 * 4 3 2 29 29 H 1.09000 * 109.47318 * 185.00108 * 4 3 2 30 30 H 0.97000 * 119.99920 * 0.02562 * 5 4 3 31 31 H 0.96995 * 119.99587 * 5.74984 * 8 6 5 32 32 H 1.08001 * 119.91637 * 0.02562 * 10 9 8 33 33 H 1.07992 * 120.09056 * 179.72745 * 11 10 9 34 34 H 0.97004 * 119.99717 * 179.97438 * 16 15 13 35 35 H 1.07996 * 120.08428 * 179.71714 * 21 12 11 36 36 H 1.08000 * 119.91692 * 179.97438 * 22 21 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1847 0.0006 5 7 3.9766 0.5640 -1.2509 6 6 5.2894 0.3551 -1.4733 7 16 6.4414 0.8157 -0.2936 8 7 5.6954 -0.2155 -2.6249 9 6 7.0361 -0.5404 -2.8054 10 6 7.7630 -1.0977 -1.7531 11 6 9.0789 -1.4133 -1.9206 12 6 9.7013 -1.1857 -3.1640 13 6 11.0616 -1.5146 -3.3468 14 1 11.6455 -1.0003 -4.0956 15 6 11.6534 -2.5068 -2.5579 16 7 10.9032 -3.3497 -1.8948 17 14 13.5144 -2.6287 -2.4512 18 1 14.0629 -1.3614 -1.9048 19 1 13.8862 -3.7552 -1.5579 20 1 14.0735 -2.8665 -3.8061 21 6 8.9608 -0.6226 -4.2219 22 6 7.6471 -0.3071 -4.0377 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3634 0.5138 0.8900 26 1 1.6885 1.8464 0.8900 27 1 1.6886 1.8463 -0.8899 28 1 3.8507 0.5685 0.8428 29 1 3.9784 2.1766 0.0902 30 1 3.3240 0.3033 -1.9195 31 1 5.0528 -0.3994 -3.3278 32 1 7.2834 -1.2757 -0.8019 33 1 9.6415 -1.8405 -1.1038 34 1 11.3136 -4.0380 -1.3481 35 1 9.4326 -0.4411 -5.1763 36 1 7.0782 0.1250 -4.8477 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000007369105.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:16:16 Heat of formation + Delta-G solvation = -3.446594 kcal Electronic energy + Delta-G solvation = -18695.704807 eV Core-core repulsion = 15692.119397 eV Total energy + Delta-G solvation = -3003.585410 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 280.099 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -39.25109 -38.35801 -37.04416 -34.98260 -33.17233 -30.36825 -29.50079 -28.70256 -26.66299 -25.03708 -23.47787 -22.91560 -21.14747 -20.50854 -18.07507 -17.40896 -17.31779 -16.94012 -16.22088 -15.31329 -15.29798 -14.99133 -14.60622 -14.33809 -13.93495 -13.43808 -12.78223 -12.71553 -12.15976 -12.10165 -12.04765 -11.76887 -11.60829 -11.22149 -11.07390 -10.92597 -10.56410 -10.52966 -10.12592 -9.84763 -9.52131 -9.18006 -8.98347 -7.67591 -7.40718 -6.98917 -6.77789 -6.25997 -4.31962 1.76073 2.48638 2.85545 3.08563 3.09106 3.11821 3.18074 3.29904 3.36578 3.93807 4.03331 4.57914 4.64496 4.76405 4.92852 4.96514 5.04474 5.29069 5.50667 5.70761 5.77283 6.10560 6.29805 6.40980 6.61046 6.71719 7.02286 7.05240 7.15031 7.25240 7.33861 7.62952 7.70767 7.96983 8.08290 8.23255 8.30152 8.66323 8.88589 8.99535 10.16472 Molecular weight = 280.10amu Principal moments of inertia in cm(-1) A = 0.037683 B = 0.003365 C = 0.003285 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 742.865486 B = 8319.390956 C = 8521.634666 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.389 6.389 3 C 0.046 3.954 4 C 0.134 3.866 5 N -0.694 5.694 6 C 0.545 3.455 7 S -0.646 6.646 8 N -0.591 5.591 9 C -0.036 4.036 10 C -0.038 4.038 11 C -0.162 4.162 12 C 0.120 3.880 13 C -0.452 4.452 14 H 0.079 0.921 15 C 0.075 3.925 16 N -0.784 5.784 17 Si 0.910 3.090 18 H -0.262 1.262 19 H -0.278 1.278 20 H -0.265 1.265 21 C -0.226 4.226 22 C -0.081 4.081 23 H 0.040 0.960 24 H 0.086 0.914 25 H 0.042 0.958 26 H 0.072 0.928 27 H 0.055 0.945 28 H 0.092 0.908 29 H 0.098 0.902 30 H 0.393 0.607 31 H 0.390 0.610 32 H 0.111 0.889 33 H 0.121 0.879 34 H 0.283 0.717 35 H 0.096 0.904 36 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.149 4.801 0.795 17.826 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.308 6.308 3 C -0.031 4.031 4 C 0.010 3.990 5 N -0.327 5.327 6 C 0.186 3.814 7 S -0.518 6.518 8 N -0.210 5.210 9 C -0.129 4.129 10 C -0.060 4.060 11 C -0.183 4.183 12 C 0.117 3.883 13 C -0.480 4.480 14 H 0.097 0.903 15 C -0.145 4.145 16 N -0.408 5.408 17 Si 0.734 3.266 18 H -0.187 1.187 19 H -0.203 1.203 20 H -0.190 1.190 21 C -0.247 4.247 22 C -0.102 4.102 23 H 0.059 0.941 24 H 0.105 0.895 25 H 0.061 0.939 26 H 0.090 0.910 27 H 0.073 0.927 28 H 0.110 0.890 29 H 0.116 0.884 30 H 0.229 0.771 31 H 0.225 0.775 32 H 0.129 0.871 33 H 0.138 0.862 34 H 0.094 0.906 35 H 0.114 0.886 36 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -16.225 4.763 1.855 17.011 hybrid contribution -0.725 -0.281 -1.222 1.449 sum -16.950 4.481 0.633 17.544 Atomic orbital electron populations 1.22762 0.80856 1.02977 0.99986 1.87974 1.19855 1.27525 1.95434 1.22926 0.93321 0.85408 1.01475 1.21634 0.90728 1.00469 0.86195 1.44708 1.03992 1.62766 1.21211 1.22339 0.87323 0.81951 0.89808 1.93271 1.48769 1.69918 1.39833 1.41959 1.10247 1.54856 1.13931 1.16899 0.81823 1.16353 0.97829 1.20515 0.95020 0.94200 0.96241 1.20875 0.93735 1.05998 0.97700 1.17714 0.92743 0.87572 0.90308 1.19593 0.95346 1.16512 1.16591 0.90275 1.25964 1.00829 0.94193 0.93471 1.69845 1.37892 1.11473 1.21578 0.86332 0.82198 0.78866 0.79156 1.18655 1.20265 1.19006 1.20464 0.93351 1.12364 0.98513 1.19965 0.95221 1.00507 0.94520 0.94098 0.89505 0.93888 0.91017 0.92695 0.88951 0.88356 0.77101 0.77489 0.87119 0.86159 0.90611 0.88614 0.89522 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.19 11.01 101.05 1.11 1.31 16 2 O -0.39 -3.73 10.65 -35.23 -0.38 -4.10 16 3 C 0.05 0.36 6.07 37.16 0.23 0.59 16 4 C 0.13 1.49 5.51 -4.04 -0.02 1.47 16 5 N -0.69 -8.77 5.51 -62.03 -0.34 -9.11 16 6 C 0.54 9.57 7.73 -86.92 -0.67 8.90 16 7 S -0.65 -14.47 24.97 -107.50 -2.68 -17.15 16 8 N -0.59 -10.36 5.29 -11.28 -0.06 -10.42 16 9 C -0.04 -0.80 5.94 -83.60 -0.50 -1.30 16 10 C -0.04 -0.96 7.76 -39.78 -0.31 -1.27 16 11 C -0.16 -4.38 8.63 -39.26 -0.34 -4.72 16 12 C 0.12 3.21 5.57 -106.80 -0.59 2.62 16 13 C -0.45 -11.95 9.04 -37.86 -0.34 -12.29 16 14 H 0.08 1.99 7.90 -52.49 -0.41 1.58 16 15 C 0.07 1.87 5.15 -17.34 -0.09 1.78 16 16 N -0.78 -20.31 10.94 55.54 0.61 -19.70 16 17 Si 0.91 18.74 29.59 -169.99 -5.03 13.71 16 18 H -0.26 -5.41 7.11 56.52 0.40 -5.01 16 19 H -0.28 -5.57 7.11 56.52 0.40 -5.16 16 20 H -0.27 -5.34 7.11 56.52 0.40 -4.94 16 21 C -0.23 -5.50 9.74 -39.26 -0.38 -5.88 16 22 C -0.08 -1.79 9.90 -39.78 -0.39 -2.18 16 23 H 0.04 0.21 8.14 -51.93 -0.42 -0.21 16 24 H 0.09 0.49 8.14 -51.93 -0.42 0.07 16 25 H 0.04 0.22 8.14 -51.93 -0.42 -0.20 16 26 H 0.07 0.45 8.14 -51.93 -0.42 0.02 16 27 H 0.05 0.35 8.14 -51.93 -0.42 -0.07 16 28 H 0.09 1.22 7.99 -51.92 -0.41 0.80 16 29 H 0.10 1.12 7.99 -51.93 -0.42 0.70 16 30 H 0.39 3.89 8.49 -40.82 -0.35 3.54 16 31 H 0.39 5.27 8.84 -40.82 -0.36 4.91 16 32 H 0.11 2.81 6.16 -47.22 -0.29 2.52 16 33 H 0.12 3.39 6.18 -52.49 -0.32 3.07 16 34 H 0.28 6.69 8.30 -40.82 -0.34 6.35 16 35 H 0.10 2.16 8.06 -52.49 -0.42 1.74 16 36 H 0.09 1.62 8.06 -52.49 -0.42 1.20 16 LS Contribution 319.00 15.07 4.81 4.81 Total: -1.00 -32.01 319.00 -10.04 -42.05 By element: Atomic # 1 Polarization: 15.57 SS G_CDS: -4.66 Total: 10.91 kcal Atomic # 6 Polarization: -8.69 SS G_CDS: -2.30 Total: -10.99 kcal Atomic # 7 Polarization: -39.44 SS G_CDS: 0.21 Total: -39.24 kcal Atomic # 8 Polarization: -3.73 SS G_CDS: -0.38 Total: -4.10 kcal Atomic # 14 Polarization: 18.74 SS G_CDS: -5.03 Total: 13.71 kcal Atomic # 16 Polarization: -14.47 SS G_CDS: -2.68 Total: -17.15 kcal Total LS contribution 4.81 Total: 4.81 kcal Total: -32.01 -10.04 -42.05 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000007369105.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.605 kcal (2) G-P(sol) polarization free energy of solvation -32.012 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.593 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.039 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.051 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.447 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds