Wall clock time and date at job start Fri Apr 10 2020 17:14:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 N 1.31774 * 122.75413 * 2 1 4 4 C 1.29033 * 117.12762 * 180.02562 * 3 2 1 5 5 C 1.50693 * 124.91834 * 179.97438 * 4 3 2 6 6 C 1.50700 * 109.47021 * 90.00167 * 5 4 3 7 7 O 1.21290 * 120.00251 * 359.97438 * 6 5 4 8 8 N 1.34777 * 119.99737 * 180.02562 * 6 5 4 9 9 C 1.37099 * 119.99758 * 179.97438 * 8 6 5 10 10 H 1.08003 * 119.99919 * 140.24829 * 9 8 6 11 11 C 1.38949 * 120.00224 * 320.25572 * 9 8 6 12 12 N 1.31409 * 120.00514 * 161.28637 * 11 9 8 13 13 Si 1.86797 * 119.99758 * 341.29063 * 11 9 8 14 14 H 1.48501 * 109.47470 * 93.61863 * 13 11 9 15 15 H 1.48513 * 109.47062 * 213.61357 * 13 11 9 16 16 H 1.48497 * 109.47265 * 333.61511 * 13 11 9 17 17 C 1.46499 * 120.00319 * 359.97438 * 8 6 5 18 18 C 1.52998 * 117.49710 * 182.39693 * 17 8 6 19 19 C 1.53004 * 117.49637 * 113.73831 * 17 8 6 20 20 S 1.70980 * 110.16288 * 0.22718 * 4 3 2 21 21 C 1.33650 * 122.74534 * 180.02562 * 2 1 3 22 22 C 1.50698 * 126.03939 * 359.97438 * 21 2 1 23 23 H 1.09004 * 109.46608 * 89.97492 * 1 2 3 24 24 H 1.08990 * 109.47594 * 209.97853 * 1 2 3 25 25 H 1.08997 * 109.46492 * 329.98094 * 1 2 3 26 26 H 1.09003 * 109.47330 * 330.00211 * 5 4 3 27 27 H 1.08998 * 109.47169 * 210.00089 * 5 4 3 28 28 H 0.96998 * 120.00707 * 180.02562 * 12 11 9 29 29 H 1.08993 * 115.55181 * 328.07135 * 17 8 6 30 30 H 1.08995 * 117.50172 * 359.97438 * 18 17 8 31 31 H 1.09001 * 117.49566 * 145.02591 * 18 17 8 32 32 H 1.08999 * 117.49486 * 214.98340 * 19 17 8 33 33 H 1.08995 * 117.50043 * 359.97382 * 19 17 8 34 34 H 1.08994 * 109.47440 * 89.99647 * 22 21 2 35 35 H 1.09000 * 109.46861 * 210.00047 * 22 21 2 36 36 H 1.09010 * 109.46909 * 329.99691 * 22 21 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2200 1.1082 0.0000 4 6 3.5041 0.9817 -0.0005 5 6 4.4836 2.1268 -0.0012 6 6 4.8108 2.5088 1.4195 7 8 4.2985 1.9103 2.3417 8 7 5.6719 3.5161 1.6651 9 6 5.9691 3.8639 2.9575 10 1 6.9813 4.1276 3.2266 11 6 4.9682 3.8772 3.9212 12 7 5.2833 3.8436 5.1965 13 14 3.1745 3.9426 3.4038 14 1 2.6311 2.5628 3.3257 15 1 2.3997 4.7238 4.4014 16 1 3.0664 4.5933 2.0734 17 6 6.2902 4.2393 0.5512 18 6 7.3014 5.3349 0.8949 19 6 5.9140 5.7111 0.3689 20 16 3.9332 -0.6733 -0.0074 21 6 2.2299 -1.1241 -0.0005 22 6 1.6846 -2.5290 -0.0006 23 1 -0.3633 0.0004 -1.0277 24 1 -0.3634 -0.8901 0.5134 25 1 -0.3632 0.8898 0.5141 26 1 4.0433 2.9814 -0.5149 27 1 5.3959 1.8243 -0.5153 28 1 4.5846 3.8525 5.8692 29 1 6.4717 3.6512 -0.3482 30 1 7.5063 5.5179 1.9496 31 1 8.1479 5.4677 0.2211 32 1 5.8483 6.0912 -0.6506 33 1 5.2061 6.1411 1.0774 34 1 1.5527 -2.8675 -1.0282 35 1 2.3830 -3.1898 0.5129 36 1 0.7236 -2.5457 0.5137 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001318574684.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:14:42 Heat of formation + Delta-G solvation = 47.877415 kcal Electronic energy + Delta-G solvation = -19934.038119 eV Core-core repulsion = 16932.678285 eV Total energy + Delta-G solvation = -3001.359834 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 280.099 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -39.82618 -38.98825 -36.47661 -33.67765 -32.85980 -31.58068 -30.35893 -29.20792 -25.40120 -24.59734 -22.75545 -21.90116 -21.36054 -19.40194 -18.55111 -17.64716 -17.14432 -16.26928 -15.47815 -14.91626 -14.77239 -14.14886 -14.08041 -13.49877 -13.33838 -13.15092 -13.04194 -12.92897 -12.56111 -12.35264 -12.17092 -12.07789 -11.62475 -11.57142 -11.13395 -10.88940 -10.73669 -10.31871 -10.03721 -9.97071 -9.61013 -9.31651 -8.92287 -8.62063 -8.47020 -8.25811 -7.52326 -6.18178 -3.95812 0.96538 1.62320 2.02623 3.04386 3.27395 3.56162 3.75544 3.82117 4.18764 4.43036 4.50257 4.67686 5.00620 5.12560 5.14438 5.16083 5.38696 5.39512 5.46347 5.48113 5.54886 5.58890 5.65184 5.72483 5.80110 5.84920 5.91640 6.10924 6.15180 6.26377 6.50464 6.65337 6.83373 7.82694 7.91845 8.08470 8.73433 8.86540 9.41620 9.75646 10.84999 Molecular weight = 280.10amu Principal moments of inertia in cm(-1) A = 0.020487 B = 0.006391 C = 0.005700 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1366.401475 B = 4380.224395 C = 4911.167671 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 C 0.065 3.935 3 N -0.469 5.469 4 C 0.093 3.907 5 C -0.065 4.065 6 C 0.450 3.550 7 O -0.529 6.529 8 N -0.431 5.431 9 C -0.348 4.348 10 H 0.099 0.901 11 C 0.091 3.909 12 N -0.865 5.865 13 Si 0.919 3.081 14 H -0.250 1.250 15 H -0.315 1.315 16 H -0.282 1.282 17 C 0.059 3.941 18 C -0.171 4.171 19 C -0.198 4.198 20 S 0.123 5.877 21 C -0.243 4.243 22 C -0.068 4.068 23 H 0.072 0.928 24 H 0.072 0.928 25 H 0.073 0.927 26 H 0.110 0.890 27 H 0.103 0.897 28 H 0.272 0.728 29 H 0.112 0.888 30 H 0.111 0.889 31 H 0.088 0.912 32 H 0.088 0.912 33 H 0.096 0.904 34 H 0.071 0.929 35 H 0.067 0.933 36 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.732 -6.977 -14.344 16.381 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.068 4.068 3 N -0.183 5.183 4 C -0.186 4.186 5 C -0.108 4.108 6 C 0.239 3.761 7 O -0.412 6.412 8 N -0.152 5.152 9 C -0.474 4.474 10 H 0.116 0.884 11 C -0.119 4.119 12 N -0.500 5.500 13 Si 0.751 3.249 14 H -0.176 1.176 15 H -0.246 1.246 16 H -0.208 1.208 17 C -0.047 4.047 18 C -0.208 4.208 19 C -0.237 4.237 20 S 0.380 5.620 21 C -0.364 4.364 22 C -0.127 4.127 23 H 0.090 0.910 24 H 0.091 0.909 25 H 0.092 0.908 26 H 0.128 0.872 27 H 0.121 0.879 28 H 0.082 0.918 29 H 0.129 0.871 30 H 0.129 0.871 31 H 0.106 0.894 32 H 0.106 0.894 33 H 0.115 0.885 34 H 0.090 0.910 35 H 0.086 0.914 36 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -3.253 -7.303 -13.684 15.848 hybrid contribution -1.638 0.334 -0.093 1.674 sum -4.891 -6.969 -13.777 16.195 Atomic orbital electron populations 1.20321 0.87623 1.03158 1.02368 1.20083 0.97914 0.86348 1.02415 1.66041 1.04582 1.31464 1.16210 1.26131 0.93600 0.97346 1.01507 1.20323 0.96405 0.95139 0.98977 1.19813 0.84777 0.82326 0.89190 1.90565 1.52142 1.53613 1.44857 1.43083 1.39831 1.26988 1.05255 1.18767 0.96515 1.50803 0.81300 0.88387 1.25310 1.00239 0.91939 0.94372 1.69732 1.34850 1.44969 1.00453 0.86264 0.83516 0.78210 0.76889 1.17599 1.24563 1.20801 1.21851 1.02231 0.88189 0.92394 1.23136 0.92015 1.02363 1.03297 1.23291 0.99460 0.99505 1.01417 1.83694 1.06692 1.03228 1.68378 1.25575 0.95306 1.00692 1.14826 1.20163 1.00958 0.89309 1.02288 0.90958 0.90945 0.90773 0.87164 0.87891 0.91801 0.87069 0.87064 0.89354 0.89402 0.88533 0.91018 0.91363 0.90531 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.97 10.06 36.01 0.36 -0.61 16 2 C 0.06 1.10 6.74 -84.22 -0.57 0.53 16 3 N -0.47 -9.39 10.53 -8.06 -0.08 -9.48 16 4 C 0.09 1.78 5.88 -13.46 -0.08 1.70 16 5 C -0.06 -1.19 4.91 -29.04 -0.14 -1.34 16 6 C 0.45 10.84 5.88 -10.98 -0.06 10.77 16 7 O -0.53 -14.99 10.91 5.55 0.06 -14.93 16 8 N -0.43 -10.30 2.56 -107.73 -0.28 -10.57 16 9 C -0.35 -9.74 8.77 -14.93 -0.13 -9.87 16 10 H 0.10 2.83 6.95 -52.48 -0.36 2.47 16 11 C 0.09 2.72 4.88 -17.47 -0.09 2.63 16 12 N -0.87 -26.82 13.96 55.50 0.77 -26.04 16 13 Si 0.92 25.82 24.59 -169.99 -4.18 21.64 16 14 H -0.25 -7.52 6.09 56.52 0.34 -7.18 16 15 H -0.32 -8.73 7.11 56.52 0.40 -8.33 16 16 H -0.28 -7.72 7.11 56.52 0.40 -7.31 16 17 C 0.06 1.08 5.85 -67.93 -0.40 0.68 16 18 C -0.17 -2.85 9.80 -26.69 -0.26 -3.11 16 19 C -0.20 -3.32 10.37 -26.69 -0.28 -3.60 16 20 S 0.12 2.00 23.18 -107.50 -2.49 -0.49 16 21 C -0.24 -3.68 6.59 -35.92 -0.24 -3.92 16 22 C -0.07 -0.72 10.10 36.00 0.36 -0.36 16 23 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 24 H 0.07 0.76 6.72 -51.93 -0.35 0.41 16 25 H 0.07 1.02 8.14 -51.93 -0.42 0.60 16 26 H 0.11 1.89 8.11 -51.93 -0.42 1.47 16 27 H 0.10 1.50 7.57 -51.93 -0.39 1.11 16 28 H 0.27 8.02 8.31 -40.82 -0.34 7.68 16 29 H 0.11 1.62 6.99 -51.93 -0.36 1.26 16 30 H 0.11 2.15 6.48 -51.93 -0.34 1.81 16 31 H 0.09 1.18 8.14 -51.93 -0.42 0.76 16 32 H 0.09 1.18 8.14 -51.93 -0.42 0.76 16 33 H 0.10 1.88 8.14 -51.93 -0.42 1.45 16 34 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 35 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 36 H 0.08 0.71 6.76 -51.92 -0.35 0.36 16 LS Contribution 310.74 15.07 4.68 4.68 Total: -1.00 -35.80 310.74 -7.76 -43.56 By element: Atomic # 1 Polarization: 2.85 SS G_CDS: -4.73 Total: -1.88 kcal Atomic # 6 Polarization: -4.98 SS G_CDS: -1.52 Total: -6.49 kcal Atomic # 7 Polarization: -46.51 SS G_CDS: 0.41 Total: -46.09 kcal Atomic # 8 Polarization: -14.99 SS G_CDS: 0.06 Total: -14.93 kcal Atomic # 14 Polarization: 25.82 SS G_CDS: -4.18 Total: 21.64 kcal Atomic # 16 Polarization: 2.00 SS G_CDS: -2.49 Total: -0.49 kcal Total LS contribution 4.68 Total: 4.68 kcal Total: -35.80 -7.76 -43.56 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001318574684.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.440 kcal (2) G-P(sol) polarization free energy of solvation -35.802 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 55.637 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.760 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.562 kcal (6) G-S(sol) free energy of system = (1) + (5) 47.877 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds