Wall clock time and date at job start Fri Apr 10 2020 17:15:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.37900 * 120.05970 * 2 1 4 4 C 1.38423 * 120.21257 * 180.26139 * 3 2 1 5 5 C 1.38248 * 120.33981 * 359.75821 * 4 3 2 6 6 C 1.38280 * 120.11694 * 359.95748 * 5 4 3 7 7 F 1.35102 * 120.10722 * 179.97438 * 6 5 4 8 8 C 1.39612 * 120.05803 * 179.72188 * 2 1 3 9 9 C 1.47698 * 120.16892 * 359.97438 * 8 2 1 10 10 O 1.21573 * 119.99926 * 269.72682 * 9 8 2 11 11 N 1.34777 * 120.00076 * 89.45179 * 9 8 2 12 12 C 1.46499 * 120.00195 * 180.27916 * 11 9 8 13 13 C 1.50694 * 109.47550 * 179.97438 * 12 11 9 14 14 O 1.21297 * 119.99707 * 0.02562 * 13 12 11 15 15 N 1.34776 * 120.00262 * 179.97438 * 13 12 11 16 16 C 1.37096 * 119.99931 * 180.02562 * 15 13 12 17 17 H 1.07998 * 120.00191 * 359.97438 * 16 15 13 18 18 C 1.38947 * 119.99788 * 180.02562 * 16 15 13 19 19 N 1.31405 * 120.00542 * 359.97438 * 18 16 15 20 20 Si 1.86803 * 119.99903 * 179.97438 * 18 16 15 21 21 H 1.48504 * 109.47233 * 59.99986 * 20 18 16 22 22 H 1.48504 * 109.47293 * 179.97438 * 20 18 16 23 23 H 1.48501 * 109.47194 * 299.99814 * 20 18 16 24 24 H 1.09004 * 109.46641 * 270.28295 * 1 2 3 25 25 H 1.09002 * 109.47405 * 30.27614 * 1 2 3 26 26 H 1.09000 * 109.47316 * 150.28090 * 1 2 3 27 27 H 1.07997 * 119.89221 * 359.97438 * 3 2 1 28 28 H 1.07992 * 119.82566 * 179.74488 * 4 3 2 29 29 H 1.07991 * 119.93975 * 179.97438 * 5 4 3 30 30 H 0.97000 * 119.99736 * 0.27188 * 11 9 8 31 31 H 1.08998 * 109.46795 * 299.99885 * 12 11 9 32 32 H 1.09002 * 109.47196 * 59.99076 * 12 11 9 33 33 H 0.96994 * 119.99703 * 0.02562 * 15 13 12 34 34 H 0.96994 * 120.00874 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1978 1.1935 0.0000 4 6 3.5820 1.1972 -0.0055 5 6 4.2835 0.0060 -0.0059 6 6 3.6049 -1.1989 0.0000 7 9 4.2907 -2.3629 -0.0010 8 6 2.2063 -1.2084 0.0059 9 6 1.4729 -2.4903 0.0127 10 8 1.1758 -3.0151 1.0683 11 7 1.1281 -3.0757 -1.1514 12 6 0.3953 -4.3442 -1.1446 13 6 0.1341 -4.7811 -2.5630 14 8 0.5224 -4.1000 -3.4886 15 7 -0.5300 -5.9290 -2.8031 16 6 -0.7671 -6.3267 -4.0936 17 1 -0.4222 -5.7199 -4.9177 18 6 -1.4523 -7.5099 -4.3411 19 7 -1.8725 -8.2480 -3.3384 20 14 -1.7760 -8.0514 -6.0994 21 1 -0.4834 -8.2303 -6.8082 22 1 -2.5183 -9.3376 -6.0925 23 1 -2.5832 -7.0172 -6.7952 24 1 -0.3633 0.0051 1.0277 25 1 -0.3634 0.8875 -0.5181 26 1 -0.3634 -0.8925 -0.5095 27 1 1.6570 2.1284 -0.0004 28 1 4.1166 2.1355 -0.0096 29 1 5.3634 0.0164 -0.0106 30 1 1.3651 -2.6569 -1.9936 31 1 0.9876 -5.1032 -0.6335 32 1 -0.5536 -4.2128 -0.6246 33 1 -0.8401 -6.4738 -2.0630 34 1 -2.3504 -9.0741 -3.5112 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001342995961.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:15:03 Heat of formation + Delta-G solvation = -100.328588 kcal Electronic energy + Delta-G solvation = -20936.005462 eV Core-core repulsion = 17362.005757 eV Total energy + Delta-G solvation = -3573.999705 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 280.101 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -49.04933 -40.20201 -38.73813 -37.92160 -34.49167 -33.71858 -33.02959 -31.43496 -31.10542 -27.94878 -27.22411 -24.77137 -23.47472 -22.00447 -20.41225 -19.65034 -18.28999 -17.80709 -17.16484 -16.83649 -16.13426 -15.71138 -15.36112 -15.19191 -15.04598 -14.48591 -14.15865 -13.95913 -13.75523 -13.63234 -13.38050 -13.35473 -12.44353 -12.24283 -12.06355 -12.00684 -11.90968 -11.64514 -11.50436 -11.11356 -10.51587 -10.33089 -9.95706 -9.64180 -9.15680 -8.90832 -8.89481 -8.65685 -8.11861 -6.52677 -3.94922 0.74242 0.91001 2.60071 3.11384 3.12998 3.21025 3.24724 3.36434 3.71733 3.94182 4.09828 4.43751 4.52809 4.72438 4.84229 4.90884 4.96723 5.15554 5.28469 5.39779 5.45288 5.68129 5.74973 5.85502 5.91174 5.94034 5.99544 6.03615 6.15620 6.55478 6.57011 7.44651 7.67112 7.89810 8.28285 8.43620 9.02950 9.37199 9.85100 10.64096 Molecular weight = 280.10amu Principal moments of inertia in cm(-1) A = 0.031009 B = 0.003454 C = 0.003427 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 902.746376 B = 8103.538720 C = 8168.456839 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.019 4.019 3 C -0.135 4.135 4 C -0.074 4.074 5 C -0.163 4.163 6 C 0.137 3.863 7 F -0.129 7.129 8 C -0.157 4.157 9 C 0.563 3.437 10 O -0.534 6.534 11 N -0.695 5.695 12 C 0.107 3.893 13 C 0.427 3.573 14 O -0.596 6.596 15 N -0.547 5.547 16 C -0.306 4.306 17 H 0.105 0.895 18 C 0.027 3.973 19 N -0.894 5.894 20 Si 0.934 3.066 21 H -0.272 1.272 22 H -0.283 1.283 23 H -0.272 1.272 24 H 0.082 0.918 25 H 0.078 0.922 26 H 0.073 0.927 27 H 0.135 0.865 28 H 0.136 0.864 29 H 0.140 0.860 30 H 0.413 0.587 31 H 0.086 0.914 32 H 0.086 0.914 33 H 0.396 0.604 34 H 0.275 0.725 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.142 16.810 7.239 19.646 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.020 4.020 3 C -0.153 4.153 4 C -0.092 4.092 5 C -0.182 4.182 6 C 0.117 3.883 7 F -0.107 7.107 8 C -0.161 4.161 9 C 0.348 3.652 10 O -0.411 6.411 11 N -0.349 5.349 12 C -0.020 4.020 13 C 0.213 3.787 14 O -0.483 6.483 15 N -0.182 5.182 16 C -0.436 4.436 17 H 0.123 0.877 18 C -0.176 4.176 19 N -0.534 5.534 20 Si 0.761 3.239 21 H -0.198 1.198 22 H -0.208 1.208 23 H -0.197 1.197 24 H 0.100 0.900 25 H 0.097 0.903 26 H 0.092 0.908 27 H 0.153 0.847 28 H 0.154 0.846 29 H 0.158 0.842 30 H 0.252 0.748 31 H 0.104 0.896 32 H 0.104 0.896 33 H 0.230 0.770 34 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 7.070 16.588 7.349 19.471 hybrid contribution -0.056 -0.791 -0.755 1.094 sum 7.014 15.797 6.594 18.499 Atomic orbital electron populations 1.20948 0.89845 1.03911 1.03447 1.19815 0.96617 0.90778 0.94813 1.21040 0.94212 0.97560 1.02459 1.21117 0.94068 0.97609 0.96376 1.21076 1.01116 0.90809 1.05180 1.17651 0.88308 0.82032 1.00303 1.91557 1.79263 1.46515 1.93375 1.19864 0.92304 0.94848 1.09066 1.17932 0.79261 0.83850 0.84198 1.90804 1.54840 1.64513 1.30965 1.45735 1.56519 1.23592 1.09026 1.21024 0.97594 0.86090 0.97335 1.19688 0.85276 0.84345 0.89387 1.90504 1.57002 1.55778 1.45020 1.41776 1.48056 1.19089 1.09281 1.19688 1.34106 1.05667 0.84106 0.87695 1.25325 0.96469 0.95942 0.99901 1.69599 1.37746 1.14701 1.31401 0.85869 0.78742 0.77833 0.81500 1.19751 1.20835 1.19749 0.89971 0.90344 0.90767 0.84682 0.84591 0.84172 0.74843 0.89579 0.89558 0.77008 0.91495 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.29 9.62 36.01 0.35 -0.95 16 2 C -0.02 -0.22 5.91 -104.23 -0.62 -0.84 16 3 C -0.13 -1.17 9.68 -39.64 -0.38 -1.56 16 4 C -0.07 -0.59 10.04 -39.51 -0.40 -0.99 16 5 C -0.16 -1.62 10.01 -39.56 -0.40 -2.01 16 6 C 0.14 1.85 7.29 -38.96 -0.28 1.56 16 7 F -0.13 -1.97 16.83 2.25 0.04 -1.93 16 8 C -0.16 -2.24 5.64 -104.91 -0.59 -2.84 16 9 C 0.56 9.70 5.37 -12.40 -0.07 9.63 16 10 O -0.53 -10.69 17.11 5.30 0.09 -10.60 16 11 N -0.70 -12.22 5.52 -62.48 -0.34 -12.56 16 12 C 0.11 2.01 6.15 -5.20 -0.03 1.98 16 13 C 0.43 9.86 7.85 -10.99 -0.09 9.77 16 14 O -0.60 -15.36 15.24 5.54 0.08 -15.27 16 15 N -0.55 -13.59 5.29 -10.97 -0.06 -13.65 16 16 C -0.31 -8.33 9.68 -14.93 -0.14 -8.47 16 17 H 0.11 2.96 7.16 -52.49 -0.38 2.59 16 18 C 0.03 0.70 5.50 -17.47 -0.10 0.60 16 19 N -0.89 -23.86 13.05 55.50 0.72 -23.14 16 20 Si 0.93 20.51 29.55 -169.99 -5.02 15.49 16 21 H -0.27 -5.95 7.11 56.52 0.40 -5.55 16 22 H -0.28 -6.08 7.11 56.52 0.40 -5.67 16 23 H -0.27 -5.92 7.11 56.52 0.40 -5.52 16 24 H 0.08 0.80 8.14 -51.93 -0.42 0.38 16 25 H 0.08 0.61 8.09 -51.93 -0.42 0.19 16 26 H 0.07 0.91 7.08 -51.93 -0.37 0.54 16 27 H 0.14 0.80 8.06 -52.49 -0.42 0.37 16 28 H 0.14 0.65 8.06 -52.49 -0.42 0.23 16 29 H 0.14 1.07 8.06 -52.49 -0.42 0.64 16 30 H 0.41 7.25 7.42 -40.82 -0.30 6.94 16 31 H 0.09 1.57 8.14 -51.93 -0.42 1.15 16 32 H 0.09 1.51 8.14 -51.93 -0.42 1.09 16 33 H 0.40 9.44 7.90 -40.82 -0.32 9.12 16 34 H 0.28 6.94 8.31 -40.82 -0.34 6.61 16 LS Contribution 311.20 15.07 4.69 4.69 Total: -1.00 -31.96 311.20 -6.01 -37.97 By element: Atomic # 1 Polarization: 16.57 SS G_CDS: -3.46 Total: 13.11 kcal Atomic # 6 Polarization: 8.64 SS G_CDS: -2.75 Total: 5.89 kcal Atomic # 7 Polarization: -49.67 SS G_CDS: 0.32 Total: -49.34 kcal Atomic # 8 Polarization: -26.05 SS G_CDS: 0.18 Total: -25.87 kcal Atomic # 9 Polarization: -1.97 SS G_CDS: 0.04 Total: -1.93 kcal Atomic # 14 Polarization: 20.51 SS G_CDS: -5.02 Total: 15.49 kcal Total LS contribution 4.69 Total: 4.69 kcal Total: -31.96 -6.01 -37.97 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001342995961.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -62.360 kcal (2) G-P(sol) polarization free energy of solvation -31.962 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.322 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.006 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.968 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.329 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds