Wall clock time and date at job start Fri Apr 10 2020 17:15:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53006 * 109.47250 * 2 1 4 4 N 1.46502 * 109.47393 * 119.99962 * 2 1 3 5 5 C 1.46507 * 119.99673 * 304.56648 * 4 2 1 6 6 C 1.50699 * 109.47149 * 269.99803 * 5 4 2 7 7 H 1.07994 * 119.99939 * 359.97438 * 6 5 4 8 8 C 1.37875 * 120.00011 * 180.02562 * 6 5 4 9 9 N 1.31513 * 120.00011 * 359.97438 * 8 6 5 10 10 Si 1.86797 * 119.99923 * 179.97438 * 8 6 5 11 11 H 1.48501 * 109.47361 * 359.97438 * 10 8 6 12 12 H 1.48505 * 109.47141 * 120.00044 * 10 8 6 13 13 H 1.48506 * 109.47220 * 240.00084 * 10 8 6 14 14 C 1.34775 * 120.00272 * 124.56465 * 4 2 1 15 15 O 1.21723 * 119.99652 * 355.00003 * 14 4 2 16 16 C 1.46248 * 120.00127 * 175.00395 * 14 4 2 17 17 C 1.35245 * 119.99841 * 199.55983 * 16 14 4 18 18 C 1.46400 * 120.00039 * 28.11703 * 17 16 14 19 19 N 1.30834 * 125.54648 * 187.67036 * 18 17 16 20 20 C 1.30804 * 115.80888 * 180.02562 * 19 18 17 21 21 C 1.34168 * 115.80968 * 359.97438 * 20 19 18 22 22 S 1.71066 * 109.15255 * 359.72859 * 21 20 19 23 23 H 1.09000 * 109.47102 * 299.99809 * 1 2 3 24 24 H 1.08993 * 109.47253 * 59.99762 * 1 2 3 25 25 H 1.08997 * 109.46926 * 180.02562 * 1 2 3 26 26 H 1.09000 * 109.47102 * 240.00190 * 2 1 3 27 27 H 1.08994 * 109.46950 * 179.97438 * 3 2 1 28 28 H 1.08995 * 109.46732 * 300.00535 * 3 2 1 29 29 H 1.09000 * 109.46912 * 60.00074 * 3 2 1 30 30 H 1.09000 * 109.47350 * 30.00315 * 5 4 2 31 31 H 1.09009 * 109.46911 * 149.99620 * 5 4 2 32 32 H 0.96998 * 119.99929 * 180.02562 * 9 8 6 33 33 H 1.08001 * 119.99653 * 19.56104 * 16 14 4 34 34 H 1.08001 * 119.99702 * 208.39404 * 17 16 14 35 35 H 1.08003 * 122.09633 * 180.02562 * 20 19 18 36 36 H 1.07999 * 125.42790 * 180.02562 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0184 -0.6906 1.1962 5 6 1.5839 -0.2510 2.5245 6 6 2.5380 0.7928 3.0452 7 1 3.3836 1.0979 2.4468 8 6 2.3318 1.3575 4.2860 9 7 1.3023 0.9856 5.0149 10 14 3.5149 2.6509 4.9317 11 1 4.5824 2.8907 3.9276 12 1 2.7774 3.9152 5.1825 13 1 4.1258 2.1745 6.1987 14 6 2.8674 -1.7303 1.0747 15 8 3.1570 -2.1536 -0.0292 16 6 3.4404 -2.3498 2.2691 17 6 4.5610 -3.1005 2.1700 18 6 5.5307 -2.8315 1.1066 19 7 6.5721 -3.5706 0.8220 20 6 7.3145 -3.1508 -0.1697 21 6 6.9094 -2.0181 -0.7639 22 16 5.4809 -1.4648 -0.0026 23 1 -0.3633 0.5138 0.8900 24 1 -0.3633 0.5138 -0.8899 25 1 -0.3633 -1.0276 0.0005 26 1 1.8933 -0.5138 -0.8900 27 1 3.1300 1.4425 0.0005 28 1 1.6766 1.9563 -0.8899 29 1 1.6767 1.9563 0.8900 30 1 0.5822 0.1735 2.4571 31 1 1.5721 -1.1037 3.2035 32 1 1.1571 1.3832 5.8877 33 1 2.9687 -2.2079 3.2302 34 1 4.7384 -3.9014 2.8726 35 1 8.1978 -3.6830 -0.4907 36 1 7.4035 -1.5353 -1.5941 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001346265343.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:15:05 Heat of formation + Delta-G solvation = 37.725467 kcal Electronic energy + Delta-G solvation = -20056.624954 eV Core-core repulsion = 17054.824899 eV Total energy + Delta-G solvation = -3001.800056 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 280.099 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -39.55831 -39.02417 -36.10579 -33.54617 -32.82784 -31.41207 -29.26329 -27.33748 -26.71053 -25.37900 -23.14474 -22.90690 -20.29997 -19.61945 -18.25725 -17.13978 -16.78961 -16.56829 -15.66533 -14.95188 -14.53816 -14.38429 -14.03811 -13.89619 -13.38481 -13.27516 -12.73506 -12.55338 -12.43008 -12.27206 -11.75262 -11.56103 -11.45108 -11.09281 -10.93072 -10.79411 -10.65941 -10.40572 -10.01274 -9.84867 -9.69135 -9.56425 -9.20543 -8.94849 -8.60316 -7.73961 -7.55653 -6.23618 -4.29921 0.44921 1.82805 2.05647 2.30955 3.18322 3.26502 3.28246 3.32034 3.76233 3.84516 4.29631 4.54559 5.09773 5.22579 5.40022 5.45024 5.49958 5.63508 5.77499 5.78183 5.94562 6.07727 6.12618 6.26744 6.33593 6.38142 6.42397 6.62413 6.67885 6.74135 6.96678 7.14642 7.44828 7.71312 7.98831 8.03713 8.20251 8.70143 8.84752 9.37443 10.83049 Molecular weight = 280.10amu Principal moments of inertia in cm(-1) A = 0.016042 B = 0.006826 C = 0.005780 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1744.970819 B = 4101.133994 C = 4843.386584 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.134 3.866 3 C -0.156 4.156 4 N -0.573 5.573 5 C 0.231 3.769 6 C -0.531 4.531 7 H 0.064 0.936 8 C 0.066 3.934 9 N -0.891 5.891 10 Si 0.891 3.109 11 H -0.271 1.271 12 H -0.283 1.283 13 H -0.282 1.282 14 C 0.528 3.472 15 O -0.558 6.558 16 C -0.162 4.162 17 C -0.024 4.024 18 C 0.050 3.950 19 N -0.462 5.462 20 C 0.020 3.980 21 C -0.333 4.333 22 S 0.271 5.729 23 H 0.067 0.933 24 H 0.058 0.942 25 H 0.052 0.948 26 H 0.087 0.913 27 H 0.052 0.948 28 H 0.049 0.951 29 H 0.079 0.921 30 H 0.043 0.957 31 H 0.039 0.961 32 H 0.265 0.735 33 H 0.162 0.838 34 H 0.150 0.850 35 H 0.161 0.839 36 H 0.167 0.833 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.540 -2.669 -7.513 8.724 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.030 3.970 3 C -0.214 4.214 4 N -0.301 5.301 5 C 0.111 3.889 6 C -0.570 4.570 7 H 0.082 0.918 8 C -0.137 4.137 9 N -0.529 5.529 10 Si 0.719 3.281 11 H -0.196 1.196 12 H -0.209 1.209 13 H -0.208 1.208 14 C 0.317 3.683 15 O -0.443 6.443 16 C -0.188 4.188 17 C -0.047 4.047 18 C -0.220 4.220 19 N -0.177 5.177 20 C -0.139 4.139 21 C -0.475 4.475 22 S 0.531 5.469 23 H 0.086 0.914 24 H 0.077 0.923 25 H 0.071 0.929 26 H 0.105 0.895 27 H 0.071 0.929 28 H 0.068 0.932 29 H 0.098 0.902 30 H 0.061 0.939 31 H 0.057 0.943 32 H 0.075 0.925 33 H 0.179 0.821 34 H 0.168 0.832 35 H 0.178 0.822 36 H 0.185 0.815 Dipole moment (debyes) X Y Z Total from point charges 3.014 -2.402 -7.765 8.668 hybrid contribution 1.457 0.315 0.256 1.513 sum 4.471 -2.086 -7.509 8.985 Atomic orbital electron populations 1.22121 0.95497 1.01771 1.02304 1.20914 0.93773 0.93470 0.88837 1.22131 1.01252 0.95751 1.02233 1.48359 1.43467 1.28906 1.09340 1.19553 0.96584 0.95879 0.76864 1.21515 1.11148 1.22325 1.02005 0.91779 1.24915 0.95410 0.96842 0.96559 1.69919 1.28161 1.42903 1.11952 0.86532 0.81106 0.81396 0.79057 1.19586 1.20888 1.20819 1.18491 0.80281 0.80523 0.88994 1.90721 1.61953 1.64125 1.27528 1.23536 0.98475 0.97465 0.99370 1.21277 0.91870 0.96994 0.94581 1.26196 0.98054 0.96146 1.01585 1.66985 1.04990 1.29558 1.16137 1.21411 1.01699 0.96197 0.94548 1.27010 1.05145 1.05230 1.10096 1.84612 1.12558 1.25158 1.24581 0.91383 0.92291 0.92916 0.89456 0.92902 0.93165 0.90224 0.93884 0.94319 0.92547 0.82070 0.83215 0.82183 0.81533 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.42 9.08 37.16 0.34 -2.09 16 2 C 0.13 2.31 3.25 -67.93 -0.22 2.09 16 3 C -0.16 -2.59 8.60 37.16 0.32 -2.27 16 4 N -0.57 -11.14 2.39 -169.15 -0.40 -11.54 16 5 C 0.23 5.02 4.44 -5.19 -0.02 5.00 16 6 C -0.53 -12.71 7.84 -34.44 -0.27 -12.98 16 7 H 0.06 1.57 7.59 -52.49 -0.40 1.17 16 8 C 0.07 1.64 5.46 -17.82 -0.10 1.54 16 9 N -0.89 -23.31 13.29 55.43 0.74 -22.57 16 10 Si 0.89 19.79 29.54 -169.99 -5.02 14.77 16 11 H -0.27 -6.01 7.11 56.52 0.40 -5.61 16 12 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 13 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 14 C 0.53 10.30 6.15 -13.04 -0.08 10.22 16 15 O -0.56 -11.46 12.14 5.17 0.06 -11.40 16 16 C -0.16 -2.91 9.13 -37.43 -0.34 -3.25 16 17 C -0.02 -0.41 10.08 -37.36 -0.38 -0.79 16 18 C 0.05 0.91 6.80 -14.69 -0.10 0.81 16 19 N -0.46 -8.29 10.67 -11.70 -0.12 -8.41 16 20 C 0.02 0.31 11.24 -19.42 -0.22 0.09 16 21 C -0.33 -5.02 11.08 29.30 0.32 -4.70 16 22 S 0.27 4.73 18.41 -107.50 -1.98 2.75 16 23 H 0.07 1.11 6.53 -51.93 -0.34 0.77 16 24 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 25 H 0.05 0.80 8.14 -51.93 -0.42 0.37 16 26 H 0.09 1.53 6.91 -51.93 -0.36 1.17 16 27 H 0.05 0.92 8.14 -51.93 -0.42 0.49 16 28 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 29 H 0.08 1.48 6.92 -51.93 -0.36 1.12 16 30 H 0.04 0.98 6.20 -51.93 -0.32 0.66 16 31 H 0.04 0.87 6.14 -51.92 -0.32 0.55 16 32 H 0.26 6.64 8.31 -40.82 -0.34 6.30 16 33 H 0.16 2.83 6.28 -52.49 -0.33 2.50 16 34 H 0.15 2.09 8.06 -52.49 -0.42 1.66 16 35 H 0.16 1.99 8.06 -52.48 -0.42 1.56 16 36 H 0.17 1.99 8.06 -52.49 -0.42 1.56 16 LS Contribution 312.51 15.07 4.71 4.71 Total: -1.00 -27.60 312.51 -7.29 -34.89 By element: Atomic # 1 Polarization: 7.65 SS G_CDS: -4.52 Total: 3.13 kcal Atomic # 6 Polarization: -5.58 SS G_CDS: -0.75 Total: -6.32 kcal Atomic # 7 Polarization: -42.73 SS G_CDS: 0.21 Total: -42.53 kcal Atomic # 8 Polarization: -11.46 SS G_CDS: 0.06 Total: -11.40 kcal Atomic # 14 Polarization: 19.79 SS G_CDS: -5.02 Total: 14.77 kcal Atomic # 16 Polarization: 4.73 SS G_CDS: -1.98 Total: 2.75 kcal Total LS contribution 4.71 Total: 4.71 kcal Total: -27.60 -7.29 -34.89 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001346265343.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.611 kcal (2) G-P(sol) polarization free energy of solvation -27.599 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.012 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.286 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.885 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.725 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds