Wall clock time and date at job start Fri Apr 10 2020 17:15:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53006 * 109.47250 * 2 1 4 4 N 1.46502 * 109.47393 * 119.99962 * 2 1 3 5 5 C 1.46507 * 119.99673 * 304.56648 * 4 2 1 6 6 C 1.50699 * 109.47149 * 269.99803 * 5 4 2 7 7 H 1.07994 * 119.99939 * 359.97438 * 6 5 4 8 8 C 1.37875 * 120.00011 * 180.02562 * 6 5 4 9 9 N 1.31513 * 120.00011 * 359.97438 * 8 6 5 10 10 Si 1.86797 * 119.99923 * 179.97438 * 8 6 5 11 11 H 1.48501 * 109.47361 * 359.97438 * 10 8 6 12 12 H 1.48505 * 109.47141 * 120.00044 * 10 8 6 13 13 H 1.48506 * 109.47220 * 240.00084 * 10 8 6 14 14 C 1.34775 * 120.00272 * 124.56465 * 4 2 1 15 15 O 1.21723 * 119.99652 * 355.00003 * 14 4 2 16 16 C 1.46248 * 120.00127 * 175.00395 * 14 4 2 17 17 C 1.35245 * 119.99841 * 199.55983 * 16 14 4 18 18 C 1.46400 * 120.00039 * 28.11703 * 17 16 14 19 19 N 1.30834 * 125.54648 * 187.67036 * 18 17 16 20 20 C 1.30804 * 115.80888 * 180.02562 * 19 18 17 21 21 C 1.34168 * 115.80968 * 359.97438 * 20 19 18 22 22 S 1.71066 * 109.15255 * 359.72859 * 21 20 19 23 23 H 1.09000 * 109.47102 * 299.99809 * 1 2 3 24 24 H 1.08993 * 109.47253 * 59.99762 * 1 2 3 25 25 H 1.08997 * 109.46926 * 180.02562 * 1 2 3 26 26 H 1.09000 * 109.47102 * 240.00190 * 2 1 3 27 27 H 1.08994 * 109.46950 * 179.97438 * 3 2 1 28 28 H 1.08995 * 109.46732 * 300.00535 * 3 2 1 29 29 H 1.09000 * 109.46912 * 60.00074 * 3 2 1 30 30 H 1.09000 * 109.47350 * 30.00315 * 5 4 2 31 31 H 1.09009 * 109.46911 * 149.99620 * 5 4 2 32 32 H 0.96998 * 119.99929 * 180.02562 * 9 8 6 33 33 H 1.08001 * 119.99653 * 19.56104 * 16 14 4 34 34 H 1.08001 * 119.99702 * 208.39404 * 17 16 14 35 35 H 1.08003 * 122.09633 * 180.02562 * 20 19 18 36 36 H 1.07999 * 125.42790 * 180.02562 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0184 -0.6906 1.1962 5 6 1.5839 -0.2510 2.5245 6 6 2.5380 0.7928 3.0452 7 1 3.3836 1.0979 2.4468 8 6 2.3318 1.3575 4.2860 9 7 1.3023 0.9856 5.0149 10 14 3.5149 2.6509 4.9317 11 1 4.5824 2.8907 3.9276 12 1 2.7774 3.9152 5.1825 13 1 4.1258 2.1745 6.1987 14 6 2.8674 -1.7303 1.0747 15 8 3.1570 -2.1536 -0.0292 16 6 3.4404 -2.3498 2.2691 17 6 4.5610 -3.1005 2.1700 18 6 5.5307 -2.8315 1.1066 19 7 6.5721 -3.5706 0.8220 20 6 7.3145 -3.1508 -0.1697 21 6 6.9094 -2.0181 -0.7639 22 16 5.4809 -1.4648 -0.0026 23 1 -0.3633 0.5138 0.8900 24 1 -0.3633 0.5138 -0.8899 25 1 -0.3633 -1.0276 0.0005 26 1 1.8933 -0.5138 -0.8900 27 1 3.1300 1.4425 0.0005 28 1 1.6766 1.9563 -0.8899 29 1 1.6767 1.9563 0.8900 30 1 0.5822 0.1735 2.4571 31 1 1.5721 -1.1037 3.2035 32 1 1.1571 1.3832 5.8877 33 1 2.9687 -2.2079 3.2302 34 1 4.7384 -3.9014 2.8726 35 1 8.1978 -3.6830 -0.4907 36 1 7.4035 -1.5353 -1.5941 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001346265343.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:15:05 Heat of formation + Delta-G solvation = 22.596040 kcal Electronic energy + Delta-G solvation = -20057.281015 eV Core-core repulsion = 17054.824899 eV Total energy + Delta-G solvation = -3002.456117 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 280.099 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -41.04562 -40.32580 -37.60326 -35.09574 -34.48612 -32.90891 -30.55524 -29.12864 -28.01631 -26.71232 -24.92477 -24.29423 -21.62701 -20.93708 -19.71963 -18.65868 -18.41083 -18.18703 -17.06229 -16.55451 -16.02200 -15.92546 -15.39699 -15.19472 -14.74784 -14.68838 -14.33530 -13.96196 -13.93599 -13.62598 -13.29376 -13.08525 -12.89891 -12.73892 -12.54260 -12.32267 -12.06708 -11.96834 -11.59561 -11.41135 -11.18447 -10.97972 -10.65415 -10.49025 -10.33051 -9.26682 -8.93510 -8.14261 -6.25121 -0.89674 0.52038 0.74051 1.03601 1.41184 1.46661 1.54764 1.92791 2.29988 2.37703 2.48956 3.16966 3.27172 3.79521 4.14159 4.19247 4.31095 4.34198 4.46684 4.55187 4.63303 4.74407 4.85888 4.95182 5.01924 5.04462 5.05026 5.18072 5.24656 5.37116 5.47774 5.55219 5.75306 5.91438 6.12978 6.58869 6.73774 6.87916 7.26823 7.45930 8.91302 Molecular weight = 280.10amu Principal moments of inertia in cm(-1) A = 0.016042 B = 0.006826 C = 0.005780 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1744.970819 B = 4101.133994 C = 4843.386584 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.127 3.873 3 C -0.147 4.147 4 N -0.577 5.577 5 C 0.246 3.754 6 C -0.525 4.525 7 H 0.056 0.944 8 C 0.025 3.975 9 N -0.920 5.920 10 Si 0.943 3.057 11 H -0.271 1.271 12 H -0.281 1.281 13 H -0.282 1.282 14 C 0.527 3.473 15 O -0.570 6.570 16 C -0.186 4.186 17 C -0.008 4.008 18 C 0.022 3.978 19 N -0.471 5.471 20 C 0.007 3.993 21 C -0.313 4.313 22 S 0.236 5.764 23 H 0.052 0.948 24 H 0.088 0.912 25 H 0.050 0.950 26 H 0.087 0.913 27 H 0.040 0.960 28 H 0.081 0.919 29 H 0.056 0.944 30 H 0.031 0.969 31 H 0.030 0.970 32 H 0.265 0.735 33 H 0.160 0.840 34 H 0.177 0.823 35 H 0.195 0.805 36 H 0.201 0.799 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.774 -2.657 -8.650 10.231 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C 0.024 3.976 3 C -0.205 4.205 4 N -0.305 5.305 5 C 0.125 3.875 6 C -0.564 4.564 7 H 0.074 0.926 8 C -0.175 4.175 9 N -0.560 5.560 10 Si 0.769 3.231 11 H -0.195 1.195 12 H -0.207 1.207 13 H -0.208 1.208 14 C 0.317 3.683 15 O -0.456 6.456 16 C -0.212 4.212 17 C -0.030 4.030 18 C -0.247 4.247 19 N -0.186 5.186 20 C -0.150 4.150 21 C -0.454 4.454 22 S 0.494 5.506 23 H 0.071 0.929 24 H 0.106 0.894 25 H 0.069 0.931 26 H 0.105 0.895 27 H 0.059 0.941 28 H 0.100 0.900 29 H 0.075 0.925 30 H 0.049 0.951 31 H 0.048 0.952 32 H 0.074 0.926 33 H 0.178 0.822 34 H 0.194 0.806 35 H 0.211 0.789 36 H 0.218 0.782 Dipole moment (debyes) X Y Z Total from point charges 4.253 -2.395 -8.914 10.163 hybrid contribution 1.187 0.255 0.483 1.307 sum 5.440 -2.140 -8.430 10.259 Atomic orbital electron populations 1.22052 0.93919 1.01907 1.02980 1.21114 0.95072 0.93487 0.87883 1.22044 1.00409 0.95433 1.02626 1.48336 1.43842 1.29275 1.09075 1.19193 0.95483 0.94878 0.77896 1.21642 1.10850 1.22184 1.01694 0.92616 1.25496 0.96587 0.98468 0.96974 1.69998 1.29538 1.44162 1.12324 0.85733 0.79485 0.79523 0.78337 1.19531 1.20700 1.20814 1.18687 0.80002 0.80294 0.89309 1.90703 1.62371 1.64493 1.28070 1.23443 0.99663 0.99160 0.98921 1.21612 0.90755 0.96322 0.94340 1.26418 0.98877 0.96810 1.02607 1.67012 1.05005 1.29758 1.16848 1.21977 1.02449 0.96640 0.93977 1.27342 1.03451 1.04567 1.10020 1.84722 1.14635 1.25816 1.25390 0.92855 0.89365 0.93054 0.89490 0.94082 0.90009 0.92478 0.95055 0.95201 0.92552 0.82220 0.80557 0.78856 0.78198 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.46 9.08 71.98 0.65 -3.81 16 2 C 0.13 4.34 3.25 44.99 0.15 4.48 16 3 C -0.15 -4.80 8.60 71.98 0.62 -4.18 16 4 N -0.58 -22.65 2.39 -807.28 -1.93 -24.58 16 5 C 0.25 10.92 4.44 85.63 0.38 11.30 16 6 C -0.52 -25.39 7.84 25.60 0.20 -25.19 16 7 H 0.06 2.76 7.59 -2.91 -0.02 2.73 16 8 C 0.02 1.24 5.46 84.65 0.46 1.70 16 9 N -0.92 -48.63 13.29 21.45 0.28 -48.35 16 10 Si 0.94 40.61 29.54 68.60 2.03 42.64 16 11 H -0.27 -11.53 7.11 99.48 0.71 -10.82 16 12 H -0.28 -11.97 7.11 99.48 0.71 -11.26 16 13 H -0.28 -12.10 7.11 99.48 0.71 -11.39 16 14 C 0.53 20.69 6.15 86.32 0.53 21.22 16 15 O -0.57 -23.37 12.14 -4.42 -0.05 -23.43 16 16 C -0.19 -6.72 9.13 23.66 0.22 -6.50 16 17 C -0.01 -0.25 10.08 23.71 0.24 -0.02 16 18 C 0.02 0.79 6.80 86.97 0.59 1.38 16 19 N -0.47 -16.03 10.67 -190.92 -2.04 -18.07 16 20 C 0.01 0.19 11.24 83.92 0.94 1.13 16 21 C -0.31 -8.58 11.08 66.89 0.74 -7.84 16 22 S 0.24 8.00 18.41 -56.49 -1.04 6.96 16 23 H 0.05 1.73 6.53 -2.39 -0.02 1.72 16 24 H 0.09 2.07 8.14 -2.39 -0.02 2.05 16 25 H 0.05 1.51 8.14 -2.39 -0.02 1.49 16 26 H 0.09 2.99 6.91 -2.39 -0.02 2.97 16 27 H 0.04 1.40 8.14 -2.39 -0.02 1.39 16 28 H 0.08 2.11 8.14 -2.39 -0.02 2.09 16 29 H 0.06 2.12 6.92 -2.39 -0.02 2.10 16 30 H 0.03 1.47 6.20 -2.39 -0.01 1.46 16 31 H 0.03 1.39 6.14 -2.38 -0.01 1.37 16 32 H 0.27 13.42 8.31 -92.71 -0.77 12.65 16 33 H 0.16 5.75 6.28 -2.91 -0.02 5.73 16 34 H 0.18 4.68 8.06 -2.91 -0.02 4.66 16 35 H 0.19 4.07 8.06 -2.91 -0.02 4.04 16 36 H 0.20 3.99 8.06 -2.91 -0.02 3.97 16 Total: -1.00 -58.25 312.51 4.06 -54.19 By element: Atomic # 1 Polarization: 15.86 SS G_CDS: 1.08 Total: 16.95 kcal Atomic # 6 Polarization: -12.04 SS G_CDS: 5.72 Total: -6.32 kcal Atomic # 7 Polarization: -87.32 SS G_CDS: -3.68 Total: -91.00 kcal Atomic # 8 Polarization: -23.37 SS G_CDS: -0.05 Total: -23.43 kcal Atomic # 14 Polarization: 40.61 SS G_CDS: 2.03 Total: 42.64 kcal Atomic # 16 Polarization: 8.00 SS G_CDS: -1.04 Total: 6.96 kcal Total: -58.25 4.06 -54.19 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001346265343.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.788 kcal (2) G-P(sol) polarization free energy of solvation -58.253 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.535 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.061 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.192 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.596 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds