Wall clock time and date at job start Fri Apr 10 2020 17:15:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53002 * 109.46978 * 2 1 4 4 C 1.50696 * 109.46910 * 240.00369 * 2 1 3 5 5 H 1.08004 * 120.00285 * 239.99668 * 4 2 1 6 6 C 1.37876 * 120.00335 * 60.00297 * 4 2 1 7 7 N 1.31514 * 119.99773 * 359.97438 * 6 4 2 8 8 Si 1.86800 * 120.00296 * 180.02562 * 6 4 2 9 9 H 1.48501 * 109.47057 * 359.97438 * 8 6 4 10 10 H 1.48500 * 109.47389 * 119.99576 * 8 6 4 11 11 H 1.48495 * 109.47216 * 239.99723 * 8 6 4 12 12 C 1.53002 * 109.47415 * 120.00098 * 2 1 3 13 13 N 1.46496 * 109.47037 * 300.00318 * 12 2 1 14 14 C 1.34777 * 119.99875 * 180.02562 * 13 12 2 15 15 O 1.21727 * 120.00086 * 359.97438 * 14 13 12 16 16 C 1.46246 * 120.00133 * 179.97438 * 14 13 12 17 17 C 1.35243 * 120.00194 * 179.97438 * 16 14 13 18 18 C 1.46406 * 119.99884 * 179.97438 * 17 16 14 19 19 N 1.30833 * 125.54873 * 180.02562 * 18 17 16 20 20 C 1.30810 * 115.81292 * 180.02562 * 19 18 17 21 21 C 1.34164 * 115.80353 * 0.02562 * 20 19 18 22 22 S 1.71056 * 109.15622 * 359.72648 * 21 20 19 23 23 H 1.09002 * 109.47045 * 299.99833 * 1 2 3 24 24 H 1.09001 * 109.47375 * 59.99908 * 1 2 3 25 25 H 1.09000 * 109.47140 * 179.97438 * 1 2 3 26 26 H 1.09004 * 109.47006 * 180.02562 * 3 2 1 27 27 H 1.09001 * 109.47600 * 299.99959 * 3 2 1 28 28 H 1.09002 * 109.46838 * 60.00684 * 3 2 1 29 29 H 0.97005 * 120.00032 * 180.02562 * 7 6 4 30 30 H 1.08992 * 109.46974 * 179.97438 * 12 2 1 31 31 H 1.09000 * 109.46986 * 59.99882 * 12 2 1 32 32 H 0.96999 * 120.00082 * 359.97438 * 13 12 2 33 33 H 1.08004 * 120.00292 * 359.97438 * 16 14 13 34 34 H 1.07995 * 119.99948 * 0.27673 * 17 16 14 35 35 H 1.07999 * 122.09642 * 180.02562 * 20 19 18 36 36 H 1.08002 * 125.42041 * 180.02562 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0322 -0.7103 -1.2305 5 1 2.6532 -1.5884 -1.1315 6 6 1.6992 -0.2392 -2.4827 7 7 0.9428 0.8298 -2.6033 8 14 2.3212 -1.1201 -4.0080 9 1 3.1463 -2.2869 -3.6039 10 1 1.1659 -1.5864 -4.8162 11 1 3.1465 -0.1872 -4.8165 12 6 2.0401 -0.7213 1.2492 13 7 1.5517 -0.0307 2.4454 14 6 1.8778 -0.4909 3.6695 15 8 2.5777 -1.4806 3.7811 16 6 1.3907 0.1987 4.8636 17 6 1.7175 -0.2634 6.0919 18 6 1.2304 0.4274 7.2873 19 7 1.4791 0.0766 8.5230 20 6 0.9455 0.8321 9.4480 21 6 0.2133 1.8662 9.0068 22 16 0.2191 1.8689 7.2963 23 1 -0.3633 0.5138 0.8900 24 1 -0.3634 0.5138 -0.8900 25 1 -0.3633 -1.0277 -0.0005 26 1 3.1300 1.4425 -0.0005 27 1 1.6766 1.9564 -0.8900 28 1 1.6767 1.9563 0.8901 29 1 0.7081 1.1611 -3.4844 30 1 3.1300 -0.7216 1.2489 31 1 1.6767 -1.7489 1.2492 32 1 0.9943 0.7581 2.3564 33 1 0.7701 1.0770 4.7646 34 1 2.3418 -1.1390 6.1910 35 1 1.0855 0.6357 10.5007 36 1 -0.2946 2.5855 9.6322 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001349533849.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:15:20 Heat of formation + Delta-G solvation = 17.030607 kcal Electronic energy + Delta-G solvation = -18668.622349 eV Core-core repulsion = 15665.924897 eV Total energy + Delta-G solvation = -3002.697452 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 280.099 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -39.88022 -39.32627 -36.47196 -34.02686 -33.32153 -30.95863 -30.00398 -26.67581 -25.74723 -25.48854 -24.80195 -22.48920 -20.25741 -19.88860 -18.84417 -18.00505 -17.22922 -15.98981 -15.75349 -15.19749 -14.91977 -14.71160 -14.61009 -14.14190 -13.68300 -13.25143 -12.93298 -12.83937 -12.39827 -12.21067 -11.74422 -11.42790 -11.22077 -10.91143 -10.71678 -10.67503 -10.40766 -10.22328 -10.10561 -9.79117 -9.73876 -9.65947 -9.31747 -8.80211 -8.69763 -8.45305 -8.31559 -6.03872 -4.13813 -0.15187 0.96236 1.41665 1.46150 2.68258 3.26515 3.35204 3.38957 3.46635 3.55411 4.10823 4.39833 4.78649 4.80265 4.89665 5.07506 5.23214 5.29196 5.67230 5.88623 6.07309 6.23416 6.30070 6.48791 6.74188 6.80064 6.90818 6.97230 6.99636 7.33066 7.35005 7.53541 7.68071 7.98338 7.99117 8.12565 8.36300 8.60275 8.87143 9.52270 10.97604 Molecular weight = 280.10amu Principal moments of inertia in cm(-1) A = 0.045648 B = 0.002972 C = 0.002844 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 613.237348 B = 9419.574692 C = 9841.754219 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C 0.055 3.945 3 C -0.132 4.132 4 C -0.505 4.505 5 H 0.058 0.942 6 C 0.066 3.934 7 N -0.886 5.886 8 Si 0.893 3.107 9 H -0.273 1.273 10 H -0.284 1.284 11 H -0.285 1.285 12 C 0.130 3.870 13 N -0.706 5.706 14 C 0.535 3.465 15 O -0.549 6.549 16 C -0.164 4.164 17 C -0.010 4.010 18 C 0.068 3.932 19 N -0.448 5.448 20 C 0.035 3.965 21 C -0.287 4.287 22 S 0.167 5.833 23 H 0.006 0.994 24 H 0.086 0.914 25 H 0.027 0.973 26 H 0.027 0.973 27 H 0.086 0.914 28 H 0.006 0.994 29 H 0.259 0.741 30 H 0.057 0.943 31 H 0.057 0.943 32 H 0.400 0.600 33 H 0.127 0.873 34 H 0.159 0.841 35 H 0.175 0.825 36 H 0.180 0.820 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.723 5.295 18.733 19.820 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C 0.055 3.945 3 C -0.189 4.189 4 C -0.544 4.544 5 H 0.077 0.923 6 C -0.135 4.135 7 N -0.525 5.525 8 Si 0.721 3.279 9 H -0.197 1.197 10 H -0.211 1.211 11 H -0.211 1.211 12 C 0.008 3.992 13 N -0.356 5.356 14 C 0.322 3.678 15 O -0.429 6.429 16 C -0.191 4.191 17 C -0.033 4.033 18 C -0.203 4.203 19 N -0.162 5.162 20 C -0.121 4.121 21 C -0.428 4.428 22 S 0.424 5.576 23 H 0.025 0.975 24 H 0.104 0.896 25 H 0.046 0.954 26 H 0.046 0.954 27 H 0.104 0.896 28 H 0.025 0.975 29 H 0.069 0.931 30 H 0.076 0.924 31 H 0.076 0.924 32 H 0.235 0.765 33 H 0.144 0.856 34 H 0.176 0.824 35 H 0.192 0.808 36 H 0.197 0.803 Dipole moment (debyes) X Y Z Total from point charges -3.433 4.898 18.010 18.977 hybrid contribution 0.029 -0.049 0.235 0.242 sum -3.403 4.848 18.245 19.182 Atomic orbital electron populations 1.21840 0.97722 0.99252 1.00126 1.18369 0.92835 0.92786 0.90556 1.21842 0.98652 0.98323 1.00123 1.21024 1.31420 1.12100 0.89853 0.92338 1.24880 0.94853 0.94921 0.98878 1.69811 1.36704 1.22807 1.23139 0.86516 0.78642 0.79768 0.82968 1.19740 1.21063 1.21069 1.21779 0.98333 0.95900 0.83200 1.46235 1.51871 1.31502 1.05944 1.18013 0.81341 0.84634 0.83790 1.90818 1.38597 1.26417 1.87090 1.23205 1.01880 1.00982 0.93025 1.21403 0.96472 0.98191 0.87256 1.26311 1.01553 0.97433 0.94983 1.67031 1.21607 1.28811 0.98708 1.21743 0.97372 0.92312 1.00695 1.26602 1.09707 1.06493 0.99968 1.83961 1.45880 1.26122 1.01659 0.97464 0.89557 0.95378 0.95379 0.89559 0.97464 0.93055 0.92428 0.92431 0.76481 0.85553 0.82362 0.80830 0.80307 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.89 8.08 37.16 0.30 -2.59 16 2 C 0.06 1.25 0.50 -155.66 -0.08 1.17 16 3 C -0.13 -2.89 8.08 37.16 0.30 -2.59 16 4 C -0.51 -13.03 8.01 -34.44 -0.28 -13.31 16 5 H 0.06 1.53 7.74 -52.48 -0.41 1.12 16 6 C 0.07 1.71 5.15 -17.82 -0.09 1.62 16 7 N -0.89 -23.27 9.35 55.43 0.52 -22.75 16 8 Si 0.89 20.52 29.54 -169.99 -5.02 15.50 16 9 H -0.27 -6.28 7.11 56.52 0.40 -5.88 16 10 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 11 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 12 C 0.13 2.69 4.50 -4.04 -0.02 2.67 16 13 N -0.71 -12.07 4.95 -61.76 -0.31 -12.38 16 14 C 0.54 8.95 7.74 -13.04 -0.10 8.85 16 15 O -0.55 -11.16 16.24 5.17 0.08 -11.08 16 16 C -0.16 -2.05 9.57 -37.43 -0.36 -2.41 16 17 C -0.01 -0.13 9.74 -37.36 -0.36 -0.49 16 18 C 0.07 0.79 7.41 -14.69 -0.11 0.68 16 19 N -0.45 -5.41 10.67 -11.70 -0.12 -5.54 16 20 C 0.03 0.32 11.24 -19.42 -0.22 0.10 16 21 C -0.29 -2.22 11.08 29.30 0.32 -1.90 16 22 S 0.17 1.45 22.05 -107.50 -2.37 -0.92 16 23 H 0.01 0.12 6.86 -51.93 -0.36 -0.23 16 24 H 0.09 2.10 6.07 -51.93 -0.32 1.79 16 25 H 0.03 0.61 8.14 -51.93 -0.42 0.19 16 26 H 0.03 0.61 8.14 -51.93 -0.42 0.19 16 27 H 0.09 2.10 6.07 -51.93 -0.32 1.79 16 28 H 0.01 0.12 6.86 -51.93 -0.36 -0.23 16 29 H 0.26 6.57 8.31 -40.82 -0.34 6.23 16 30 H 0.06 1.25 8.14 -51.93 -0.42 0.83 16 31 H 0.06 1.25 8.14 -51.93 -0.42 0.83 16 32 H 0.40 6.04 6.14 -40.82 -0.25 5.79 16 33 H 0.13 1.23 7.15 -52.48 -0.38 0.86 16 34 H 0.16 2.11 7.52 -52.49 -0.39 1.71 16 35 H 0.17 1.12 8.06 -52.49 -0.42 0.70 16 36 H 0.18 0.86 8.06 -52.49 -0.42 0.43 16 LS Contribution 316.64 15.07 4.77 4.77 Total: -1.00 -29.17 316.64 -7.58 -36.75 By element: Atomic # 1 Polarization: 8.28 SS G_CDS: -4.44 Total: 3.84 kcal Atomic # 6 Polarization: -7.50 SS G_CDS: -0.69 Total: -8.19 kcal Atomic # 7 Polarization: -40.76 SS G_CDS: 0.09 Total: -40.67 kcal Atomic # 8 Polarization: -11.16 SS G_CDS: 0.08 Total: -11.08 kcal Atomic # 14 Polarization: 20.52 SS G_CDS: -5.02 Total: 15.50 kcal Atomic # 16 Polarization: 1.45 SS G_CDS: -2.37 Total: -0.92 kcal Total LS contribution 4.77 Total: 4.77 kcal Total: -29.17 -7.58 -36.75 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001349533849.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.783 kcal (2) G-P(sol) polarization free energy of solvation -29.173 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.611 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.580 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.753 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.031 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds