Wall clock time and date at job start Fri Apr 10 2020 17:15:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 N 1.31786 * 122.74909 * 2 1 4 4 C 1.29027 * 117.12463 * 180.02562 * 3 2 1 5 5 S 1.70981 * 110.16693 * 359.72307 * 4 3 2 6 6 C 1.33642 * 122.75209 * 179.97438 * 2 1 3 7 7 C 1.50695 * 126.03586 * 0.02562 * 6 2 1 8 8 C 1.52996 * 109.47421 * 89.99407 * 7 6 2 9 9 C 1.50705 * 109.47363 * 179.97438 * 8 7 6 10 10 O 1.21294 * 119.99575 * 0.02562 * 9 8 7 11 11 N 1.34776 * 120.00229 * 179.97438 * 9 8 7 12 12 C 1.37093 * 119.99929 * 179.97438 * 11 9 8 13 13 H 1.08001 * 119.99960 * 224.48559 * 12 11 9 14 14 C 1.38953 * 119.99851 * 44.49503 * 12 11 9 15 15 N 1.31409 * 120.00067 * 17.98800 * 14 12 11 16 16 Si 1.86802 * 119.99609 * 197.99236 * 14 12 11 17 17 H 1.48494 * 109.47294 * 359.97438 * 16 14 12 18 18 H 1.48500 * 109.47015 * 119.99876 * 16 14 12 19 19 H 1.48502 * 109.46743 * 239.99282 * 16 14 12 20 20 C 1.46504 * 119.99564 * 0.02562 * 11 9 8 21 21 C 1.53002 * 117.49195 * 183.27143 * 20 11 9 22 22 C 1.53006 * 117.49831 * 114.61447 * 20 11 9 23 23 H 1.09001 * 109.47066 * 270.00433 * 1 2 3 24 24 H 1.09004 * 109.46977 * 30.00495 * 1 2 3 25 25 H 1.09000 * 109.46922 * 149.99929 * 1 2 3 26 26 H 1.07999 * 124.91655 * 180.02562 * 4 3 2 27 27 H 1.09001 * 109.47191 * 329.99475 * 7 6 2 28 28 H 1.09001 * 109.46923 * 209.99647 * 7 6 2 29 29 H 1.09001 * 109.46882 * 59.99879 * 8 7 6 30 30 H 1.09001 * 109.47268 * 300.00028 * 8 7 6 31 31 H 0.97003 * 119.99560 * 174.96847 * 15 14 12 32 32 H 1.08999 * 115.55272 * 328.93634 * 20 11 9 33 33 H 1.08993 * 117.50480 * 359.97438 * 21 20 11 34 34 H 1.09001 * 117.49491 * 145.01896 * 21 20 11 35 35 H 1.08993 * 117.49420 * 214.97492 * 22 20 11 36 36 H 1.09002 * 117.49844 * 359.97012 * 22 20 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2199 1.1084 0.0000 4 6 3.5039 0.9819 -0.0005 5 16 3.9333 -0.6731 0.0067 6 6 2.2300 -1.1240 0.0005 7 6 1.6847 -2.5288 0.0006 8 6 1.5006 -3.0045 -1.4418 9 6 0.9559 -4.4097 -1.4417 10 8 0.7361 -4.9748 -0.3912 11 7 0.7120 -5.0380 -2.6088 12 6 0.2170 -6.3165 -2.6087 13 1 0.6329 -7.0567 -3.2762 14 6 -0.8199 -6.6599 -1.7498 15 7 -1.5592 -5.7207 -1.2037 16 14 -1.1628 -8.4568 -1.3714 17 1 -0.1962 -9.3108 -2.1070 18 1 -1.0204 -8.6911 0.0881 19 1 -2.5451 -8.7966 -1.7946 20 6 0.9769 -4.3552 -3.8776 21 6 0.6079 -5.0919 -5.1668 22 6 2.0779 -4.9287 -4.7721 23 1 -0.3633 0.0001 1.0277 24 1 -0.3633 0.8900 -0.5139 25 1 -0.3633 -0.8900 -0.5138 26 1 4.2059 1.8027 -0.0002 27 1 0.7234 -2.5454 0.5141 28 1 2.3828 -3.1894 0.5148 29 1 2.4619 -2.9879 -1.9554 30 1 0.8025 -2.3439 -1.9560 31 1 -2.3276 -5.9614 -0.6629 32 1 0.8529 -3.2723 -3.8636 33 1 0.1684 -6.0847 -5.0710 34 1 0.2414 -4.4937 -6.0010 35 1 2.6778 -4.2231 -5.3468 36 1 2.6053 -5.8137 -4.4164 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001535253486.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:15:42 Heat of formation + Delta-G solvation = 39.020959 kcal Electronic energy + Delta-G solvation = -19672.892573 eV Core-core repulsion = 16671.148694 eV Total energy + Delta-G solvation = -3001.743879 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 280.099 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -39.81900 -38.59001 -36.20288 -33.99027 -32.70745 -31.05738 -30.45593 -27.55411 -25.33383 -24.49957 -22.75661 -21.69287 -21.10508 -19.14388 -18.61596 -17.97169 -16.48417 -16.05360 -15.52439 -14.81115 -14.65828 -14.40118 -14.09694 -13.79603 -13.43141 -13.02143 -12.57569 -12.45090 -12.31215 -12.11615 -11.90179 -11.46373 -11.25551 -11.02167 -10.88780 -10.87463 -10.65623 -10.34561 -10.15057 -9.97091 -9.74441 -9.57644 -9.16169 -8.72893 -8.57730 -8.00046 -7.02684 -6.11752 -3.87081 0.80974 1.45584 1.84585 2.87119 3.28903 3.38649 3.40559 4.11346 4.26100 4.30312 4.76010 4.79568 5.10265 5.18933 5.27438 5.33411 5.56946 5.61717 5.66070 5.76284 5.79064 5.80410 5.89203 5.99328 6.11153 6.17122 6.21992 6.36410 6.47840 6.51171 6.60856 6.75253 6.92655 7.62027 7.79107 8.27337 9.06585 9.15412 9.66540 10.29138 10.97588 Molecular weight = 280.10amu Principal moments of inertia in cm(-1) A = 0.021460 B = 0.004956 C = 0.004508 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1304.456338 B = 5648.123066 C = 6210.330049 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 C 0.049 3.951 3 N -0.466 5.466 4 C 0.004 3.996 5 S 0.107 5.893 6 C -0.194 4.194 7 C -0.025 4.025 8 C -0.125 4.125 9 C 0.484 3.516 10 O -0.534 6.534 11 N -0.428 5.428 12 C -0.348 4.348 13 H 0.077 0.923 14 C 0.074 3.926 15 N -0.834 5.834 16 Si 0.911 3.089 17 H -0.272 1.272 18 H -0.281 1.281 19 H -0.286 1.286 20 C 0.075 3.925 21 C -0.174 4.174 22 C -0.208 4.208 23 H 0.073 0.927 24 H 0.072 0.928 25 H 0.081 0.919 26 H 0.195 0.805 27 H 0.094 0.906 28 H 0.080 0.920 29 H 0.074 0.926 30 H 0.076 0.924 31 H 0.263 0.737 32 H 0.102 0.898 33 H 0.107 0.893 34 H 0.083 0.917 35 H 0.083 0.917 36 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.882 10.300 -1.356 13.041 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.082 4.082 3 N -0.180 5.180 4 C -0.294 4.294 5 S 0.360 5.640 6 C -0.315 4.315 7 C -0.065 4.065 8 C -0.167 4.167 9 C 0.272 3.728 10 O -0.412 6.412 11 N -0.149 5.149 12 C -0.475 4.475 13 H 0.094 0.906 14 C -0.136 4.136 15 N -0.468 5.468 16 Si 0.738 3.262 17 H -0.196 1.196 18 H -0.207 1.207 19 H -0.212 1.212 20 C -0.031 4.031 21 C -0.211 4.211 22 C -0.247 4.247 23 H 0.092 0.908 24 H 0.091 0.909 25 H 0.100 0.900 26 H 0.212 0.788 27 H 0.112 0.888 28 H 0.099 0.901 29 H 0.092 0.908 30 H 0.094 0.906 31 H 0.073 0.927 32 H 0.119 0.881 33 H 0.125 0.875 34 H 0.102 0.898 35 H 0.102 0.898 36 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges 8.390 10.090 -0.595 13.136 hybrid contribution -1.001 -0.574 0.001 1.154 sum 7.389 9.517 -0.594 12.063 Atomic orbital electron populations 1.20382 0.86936 1.03573 1.02963 1.20250 0.98323 0.86075 1.03551 1.66158 1.05048 1.31838 1.14933 1.28148 0.95258 0.99942 1.06028 1.84016 1.08117 1.03471 1.68375 1.26001 0.94327 1.01431 1.09713 1.19816 1.02148 0.86828 0.97718 1.21600 1.01644 0.97233 0.96199 1.19717 0.81573 0.87033 0.84524 1.90531 1.52942 1.67244 1.30486 1.42775 1.57629 1.13581 1.00961 1.18879 1.17568 0.85364 1.25695 0.90575 1.25230 0.94286 0.98126 0.95973 1.69826 1.13933 1.32968 1.30031 0.86170 0.77564 0.83770 0.78664 1.19610 1.20651 1.21206 1.21701 1.01508 0.94865 0.85027 1.23069 0.97145 1.03483 0.97446 1.23323 0.92126 1.03817 1.05474 0.90813 0.90926 0.90003 0.78840 0.88782 0.90100 0.90790 0.90573 0.92680 0.88087 0.87490 0.89839 0.89848 0.89120 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.07 9.82 36.00 0.35 -0.72 16 2 C 0.05 0.73 6.74 -84.22 -0.57 0.16 16 3 N -0.47 -6.78 10.53 -11.90 -0.13 -6.90 16 4 C 0.00 0.05 12.23 51.58 0.63 0.68 16 5 S 0.11 1.31 23.22 -107.50 -2.50 -1.19 16 6 C -0.19 -2.91 5.84 -35.92 -0.21 -3.12 16 7 C -0.02 -0.43 4.44 -27.89 -0.12 -0.55 16 8 C -0.13 -2.33 4.30 -27.88 -0.12 -2.45 16 9 C 0.48 11.87 6.97 -10.98 -0.08 11.79 16 10 O -0.53 -15.18 13.75 5.55 0.08 -15.11 16 11 N -0.43 -10.53 2.83 -107.72 -0.31 -10.83 16 12 C -0.35 -9.39 7.91 -14.93 -0.12 -9.50 16 13 H 0.08 2.00 7.27 -52.49 -0.38 1.62 16 14 C 0.07 2.06 4.39 -17.47 -0.08 1.99 16 15 N -0.83 -24.30 11.74 55.50 0.65 -23.65 16 16 Si 0.91 21.73 29.59 -169.99 -5.03 16.70 16 17 H -0.27 -6.27 7.11 56.52 0.40 -5.87 16 18 H -0.28 -6.90 7.11 56.52 0.40 -6.50 16 19 H -0.29 -6.61 7.11 56.52 0.40 -6.21 16 20 C 0.08 1.49 5.87 -67.92 -0.40 1.09 16 21 C -0.17 -3.11 9.80 -26.69 -0.26 -3.37 16 22 C -0.21 -3.53 10.36 -26.69 -0.28 -3.81 16 23 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 24 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 25 H 0.08 1.17 7.19 -51.93 -0.37 0.79 16 26 H 0.19 1.54 8.06 -52.49 -0.42 1.12 16 27 H 0.09 1.74 7.39 -51.93 -0.38 1.36 16 28 H 0.08 1.44 8.10 -51.93 -0.42 1.02 16 29 H 0.07 1.26 8.11 -51.93 -0.42 0.83 16 30 H 0.08 1.35 7.40 -51.93 -0.38 0.97 16 31 H 0.26 7.34 8.32 -40.82 -0.34 7.00 16 32 H 0.10 1.80 6.96 -51.93 -0.36 1.44 16 33 H 0.11 2.12 6.73 -51.93 -0.35 1.77 16 34 H 0.08 1.27 8.14 -51.93 -0.42 0.85 16 35 H 0.08 1.18 8.14 -51.93 -0.42 0.76 16 36 H 0.09 1.65 8.14 -51.93 -0.42 1.22 16 LS Contribution 317.87 15.07 4.79 4.79 Total: -1.00 -32.42 317.87 -8.43 -40.86 By element: Atomic # 1 Polarization: 7.90 SS G_CDS: -4.75 Total: 3.16 kcal Atomic # 6 Polarization: -6.58 SS G_CDS: -1.25 Total: -7.82 kcal Atomic # 7 Polarization: -41.61 SS G_CDS: 0.22 Total: -41.39 kcal Atomic # 8 Polarization: -15.18 SS G_CDS: 0.08 Total: -15.11 kcal Atomic # 14 Polarization: 21.73 SS G_CDS: -5.03 Total: 16.70 kcal Atomic # 16 Polarization: 1.31 SS G_CDS: -2.50 Total: -1.19 kcal Total LS contribution 4.79 Total: 4.79 kcal Total: -32.42 -8.43 -40.86 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001535253486.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.876 kcal (2) G-P(sol) polarization free energy of solvation -32.424 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.452 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.431 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.855 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.021 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds