Wall clock time and date at job start Fri Apr 10 2020 17:16:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.37461 * 123.35245 * 2 1 4 4 C 1.33819 * 115.10035 * 179.76646 * 3 2 1 5 5 S 1.70618 * 110.95291 * 0.48302 * 4 3 2 6 6 C 1.36650 * 123.34940 * 180.29036 * 2 1 3 7 7 C 1.46591 * 125.45791 * 359.96400 * 6 2 1 8 8 O 1.21703 * 119.99975 * 0.02562 * 7 6 2 9 9 N 1.34772 * 119.99777 * 180.02562 * 7 6 2 10 10 C 1.46502 * 119.99793 * 180.02562 * 9 7 6 11 11 C 1.50705 * 109.47032 * 180.02562 * 10 9 7 12 12 C 1.31000 * 120.00178 * 127.15279 * 11 10 9 13 13 C 1.50701 * 120.00011 * 7.55602 * 12 11 10 14 14 N 1.46496 * 109.47160 * 127.00517 * 13 12 11 15 15 C 1.36931 * 120.00155 * 180.02562 * 14 13 12 16 16 H 1.07997 * 120.00101 * 0.02562 * 15 14 13 17 17 C 1.38819 * 120.00317 * 179.97438 * 15 14 13 18 18 N 1.31617 * 119.99444 * 0.02562 * 17 15 14 19 19 Si 1.86796 * 120.00228 * 179.97438 * 17 15 14 20 20 H 1.48504 * 109.46747 * 90.00347 * 19 17 15 21 21 H 1.48493 * 109.47115 * 210.00201 * 19 17 15 22 22 H 1.48505 * 109.47262 * 330.00535 * 19 17 15 23 23 H 1.09000 * 109.47196 * 269.70932 * 1 2 3 24 24 H 1.09004 * 109.46750 * 29.70973 * 1 2 3 25 25 H 1.08999 * 109.46949 * 149.70806 * 1 2 3 26 26 H 1.08001 * 122.45554 * 359.97229 * 3 2 1 27 27 H 1.08007 * 124.52404 * 180.24008 * 4 3 2 28 28 H 0.96995 * 120.00267 * 359.97438 * 9 7 6 29 29 H 1.09006 * 109.46941 * 299.99558 * 10 9 7 30 30 H 1.08992 * 109.47583 * 59.99287 * 10 9 7 31 31 H 1.08002 * 119.99496 * 307.14611 * 11 10 9 32 32 H 1.07990 * 119.99888 * 187.55722 * 12 11 10 33 33 H 1.09000 * 109.47023 * 247.00829 * 13 12 11 34 34 H 1.09007 * 109.47031 * 7.00597 * 13 12 11 35 35 H 0.97004 * 119.99810 * 359.97438 * 14 13 12 36 36 H 0.96999 * 119.99695 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2628 1.1482 0.0000 4 6 3.5871 0.9562 0.0049 5 16 3.9623 -0.7082 -0.0035 6 6 2.2583 -1.1415 -0.0058 7 6 1.7283 -2.5082 -0.0120 8 8 0.5257 -2.6946 -0.0127 9 7 2.5730 -3.5584 -0.0168 10 6 2.0434 -4.9243 -0.0236 11 6 3.1866 -5.9063 -0.0274 12 6 3.2364 -6.8571 0.8724 13 6 2.0712 -7.0760 1.8027 14 7 1.6577 -8.4802 1.7454 15 6 0.6099 -8.9172 2.5111 16 1 0.0881 -8.2265 3.1569 17 6 0.2177 -10.2477 2.4564 18 7 0.8533 -11.0892 1.6690 19 14 -1.2112 -10.8439 3.5015 20 1 -2.4770 -10.6977 2.7388 21 1 -1.0063 -12.2724 3.8514 22 1 -1.2863 -10.0354 4.7449 23 1 -0.3633 -0.0052 1.0276 24 1 -0.3633 0.8926 -0.5093 25 1 -0.3633 -0.8874 -0.5184 26 1 1.8202 2.1334 -0.0004 27 1 4.3206 1.7489 0.0094 28 1 3.5315 -3.4099 -0.0166 29 1 1.4328 -5.0816 0.8656 30 1 1.4331 -5.0731 -0.9143 31 1 3.9647 -5.8262 -0.7721 32 1 4.1125 -7.4840 0.9475 33 1 2.3675 -6.8257 2.8213 34 1 1.2397 -6.4397 1.4994 35 1 2.1257 -9.1003 1.1645 36 1 0.5790 -12.0188 1.6305 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001699223218.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:16:00 Heat of formation + Delta-G solvation = 28.167294 kcal Electronic energy + Delta-G solvation = -18335.373268 eV Core-core repulsion = 15333.158739 eV Total energy + Delta-G solvation = -3002.214529 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 280.099 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -39.95432 -38.12477 -36.49829 -34.53168 -32.88366 -31.17874 -30.48362 -28.70802 -26.31837 -24.86714 -23.70168 -22.48083 -21.45488 -19.65065 -18.41306 -18.13768 -16.90614 -16.23529 -15.97060 -15.62508 -15.20970 -14.65956 -14.37388 -13.93579 -13.60718 -13.46638 -13.33022 -13.16555 -12.63523 -12.60145 -12.43112 -12.29434 -11.98901 -11.74292 -11.18852 -10.94863 -10.79839 -10.42928 -10.03267 -10.00509 -9.77099 -9.28963 -9.09192 -8.98245 -8.73225 -8.59560 -6.91552 -5.76244 -3.05393 0.25412 1.19787 1.58374 2.11871 2.23938 3.10113 3.29921 3.45885 3.50875 3.52573 4.55847 4.62301 4.68539 4.93570 4.99647 5.07964 5.28464 5.33360 5.56822 5.57156 5.65935 5.68213 5.77127 5.86966 5.95607 6.08609 6.19469 6.28617 6.35094 6.53915 6.57573 6.86904 7.13426 7.41113 7.71251 8.11359 8.42278 9.53669 10.09391 10.44830 11.46617 Molecular weight = 280.10amu Principal moments of inertia in cm(-1) A = 0.030148 B = 0.002934 C = 0.002748 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 928.538666 B = 9539.623259 C =10185.618174 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.107 4.107 2 C -0.022 4.022 3 C -0.148 4.148 4 C -0.229 4.229 5 S 0.192 5.808 6 C -0.270 4.270 7 C 0.587 3.413 8 O -0.523 6.523 9 N -0.720 5.720 10 C 0.142 3.858 11 C -0.202 4.202 12 C -0.107 4.107 13 C 0.161 3.839 14 N -0.728 5.728 15 C -0.241 4.241 16 H 0.072 0.928 17 C -0.014 4.014 18 N -0.933 5.933 19 Si 0.909 3.091 20 H -0.289 1.289 21 H -0.291 1.291 22 H -0.281 1.281 23 H 0.076 0.924 24 H 0.064 0.936 25 H 0.094 0.906 26 H 0.145 0.855 27 H 0.168 0.832 28 H 0.395 0.605 29 H 0.092 0.908 30 H 0.074 0.926 31 H 0.112 0.888 32 H 0.114 0.886 33 H 0.029 0.971 34 H 0.036 0.964 35 H 0.385 0.615 36 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.682 25.497 -5.505 27.491 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C -0.037 4.037 3 C -0.179 4.179 4 C -0.366 4.366 5 S 0.460 5.540 6 C -0.390 4.390 7 C 0.373 3.627 8 O -0.402 6.402 9 N -0.370 5.370 10 C 0.020 3.980 11 C -0.221 4.221 12 C -0.126 4.126 13 C 0.034 3.966 14 N -0.372 5.372 15 C -0.372 4.372 16 H 0.090 0.910 17 C -0.210 4.210 18 N -0.582 5.582 19 Si 0.740 3.260 20 H -0.216 1.216 21 H -0.217 1.217 22 H -0.207 1.207 23 H 0.095 0.905 24 H 0.083 0.917 25 H 0.113 0.887 26 H 0.162 0.838 27 H 0.186 0.814 28 H 0.229 0.771 29 H 0.110 0.890 30 H 0.092 0.908 31 H 0.130 0.870 32 H 0.132 0.868 33 H 0.046 0.954 34 H 0.054 0.946 35 H 0.218 0.782 36 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 9.065 24.496 -5.379 26.668 hybrid contribution -1.178 0.432 0.299 1.290 sum 7.888 24.928 -5.080 26.635 Atomic orbital electron populations 1.20758 0.88567 1.03943 1.03248 1.19564 0.98012 0.90369 0.95799 1.19948 0.92584 0.99719 1.05691 1.25247 1.00677 1.01759 1.08954 1.82983 1.04282 0.98359 1.68338 1.24475 0.97116 0.97510 1.19908 1.16908 0.86253 0.82748 0.76798 1.90809 1.14239 1.85150 1.49973 1.45920 1.09464 1.06264 1.75389 1.20607 0.95323 0.78140 1.03903 1.22584 1.00111 0.99157 1.00239 1.23304 0.98632 0.96102 0.94567 1.20019 0.92325 0.88732 0.95500 1.42267 1.38747 1.03817 1.52360 1.19252 1.07125 0.93244 1.17568 0.91043 1.24760 0.99848 0.96180 1.00171 1.69666 1.42896 1.03903 1.41731 0.86156 0.82191 0.77833 0.79828 1.21611 1.21739 1.20680 0.90540 0.91708 0.88707 0.83772 0.81408 0.77069 0.89021 0.90765 0.86997 0.86802 0.95369 0.94632 0.78153 0.93470 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.10 9.55 36.01 0.34 -0.75 16 2 C -0.02 -0.24 5.90 -105.48 -0.62 -0.86 16 3 C -0.15 -1.22 9.97 -41.42 -0.41 -1.63 16 4 C -0.23 -1.65 10.92 29.18 0.32 -1.33 16 5 S 0.19 1.55 22.16 -107.50 -2.38 -0.83 16 6 C -0.27 -3.10 6.45 -36.79 -0.24 -3.34 16 7 C 0.59 8.25 7.78 -12.89 -0.10 8.15 16 8 O -0.52 -9.05 14.24 5.19 0.07 -8.98 16 9 N -0.72 -9.01 5.54 -62.82 -0.35 -9.36 16 10 C 0.14 2.06 5.76 -5.19 -0.03 2.03 16 11 C -0.20 -2.77 9.63 -36.02 -0.35 -3.11 16 12 C -0.11 -1.73 9.63 -36.03 -0.35 -2.08 16 13 C 0.16 3.30 6.35 -5.20 -0.03 3.27 16 14 N -0.73 -18.88 5.59 -61.09 -0.34 -19.22 16 15 C -0.24 -6.90 9.99 -15.06 -0.15 -7.05 16 16 H 0.07 1.99 7.83 -52.49 -0.41 1.58 16 17 C -0.01 -0.40 5.50 -17.43 -0.10 -0.50 16 18 N -0.93 -28.62 13.06 55.49 0.72 -27.90 16 19 Si 0.91 22.79 29.55 -169.99 -5.02 17.76 16 20 H -0.29 -7.22 7.11 56.52 0.40 -6.81 16 21 H -0.29 -7.30 7.11 56.52 0.40 -6.90 16 22 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 23 H 0.08 0.77 8.14 -51.93 -0.42 0.35 16 24 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 25 H 0.09 1.20 6.01 -51.93 -0.31 0.88 16 26 H 0.14 0.87 8.06 -52.49 -0.42 0.45 16 27 H 0.17 0.76 8.06 -52.48 -0.42 0.33 16 28 H 0.40 3.92 7.58 -40.82 -0.31 3.61 16 29 H 0.09 1.53 5.30 -51.93 -0.28 1.25 16 30 H 0.07 1.13 8.14 -51.93 -0.42 0.71 16 31 H 0.11 1.27 8.06 -52.49 -0.42 0.84 16 32 H 0.11 1.74 8.06 -52.49 -0.42 1.32 16 33 H 0.03 0.59 8.14 -51.93 -0.42 0.17 16 34 H 0.04 0.75 5.30 -51.93 -0.27 0.47 16 35 H 0.38 10.42 7.66 -40.82 -0.31 10.11 16 36 H 0.26 7.55 8.31 -40.82 -0.34 7.21 16 LS Contribution 321.67 15.07 4.85 4.85 Total: -1.00 -33.11 321.67 -8.58 -41.68 By element: Atomic # 1 Polarization: 13.61 SS G_CDS: -4.41 Total: 9.20 kcal Atomic # 6 Polarization: -5.49 SS G_CDS: -1.71 Total: -7.21 kcal Atomic # 7 Polarization: -56.51 SS G_CDS: 0.03 Total: -56.48 kcal Atomic # 8 Polarization: -9.05 SS G_CDS: 0.07 Total: -8.98 kcal Atomic # 14 Polarization: 22.79 SS G_CDS: -5.02 Total: 17.76 kcal Atomic # 16 Polarization: 1.55 SS G_CDS: -2.38 Total: -0.83 kcal Total LS contribution 4.85 Total: 4.85 kcal Total: -33.11 -8.58 -41.68 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001699223218.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.852 kcal (2) G-P(sol) polarization free energy of solvation -33.109 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.742 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.575 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.684 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.167 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds