Wall clock time and date at job start Fri Apr 10 2020 17:16:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.37461 * 123.35245 * 2 1 4 4 C 1.33819 * 115.10035 * 179.76646 * 3 2 1 5 5 S 1.70618 * 110.95291 * 0.48302 * 4 3 2 6 6 C 1.36650 * 123.34940 * 180.29036 * 2 1 3 7 7 C 1.46591 * 125.45791 * 359.96400 * 6 2 1 8 8 O 1.21703 * 119.99975 * 0.02562 * 7 6 2 9 9 N 1.34772 * 119.99777 * 180.02562 * 7 6 2 10 10 C 1.46502 * 119.99793 * 180.02562 * 9 7 6 11 11 C 1.50705 * 109.47032 * 180.02562 * 10 9 7 12 12 C 1.31000 * 120.00178 * 127.15279 * 11 10 9 13 13 C 1.50701 * 120.00011 * 7.55602 * 12 11 10 14 14 N 1.46496 * 109.47160 * 127.00517 * 13 12 11 15 15 C 1.36931 * 120.00155 * 180.02562 * 14 13 12 16 16 H 1.07997 * 120.00101 * 0.02562 * 15 14 13 17 17 C 1.38819 * 120.00317 * 179.97438 * 15 14 13 18 18 N 1.31617 * 119.99444 * 0.02562 * 17 15 14 19 19 Si 1.86796 * 120.00228 * 179.97438 * 17 15 14 20 20 H 1.48504 * 109.46747 * 90.00347 * 19 17 15 21 21 H 1.48493 * 109.47115 * 210.00201 * 19 17 15 22 22 H 1.48505 * 109.47262 * 330.00535 * 19 17 15 23 23 H 1.09000 * 109.47196 * 269.70932 * 1 2 3 24 24 H 1.09004 * 109.46750 * 29.70973 * 1 2 3 25 25 H 1.08999 * 109.46949 * 149.70806 * 1 2 3 26 26 H 1.08001 * 122.45554 * 359.97229 * 3 2 1 27 27 H 1.08007 * 124.52404 * 180.24008 * 4 3 2 28 28 H 0.96995 * 120.00267 * 359.97438 * 9 7 6 29 29 H 1.09006 * 109.46941 * 299.99558 * 10 9 7 30 30 H 1.08992 * 109.47583 * 59.99287 * 10 9 7 31 31 H 1.08002 * 119.99496 * 307.14611 * 11 10 9 32 32 H 1.07990 * 119.99888 * 187.55722 * 12 11 10 33 33 H 1.09000 * 109.47023 * 247.00829 * 13 12 11 34 34 H 1.09007 * 109.47031 * 7.00597 * 13 12 11 35 35 H 0.97004 * 119.99810 * 359.97438 * 14 13 12 36 36 H 0.96999 * 119.99695 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2628 1.1482 0.0000 4 6 3.5871 0.9562 0.0049 5 16 3.9623 -0.7082 -0.0035 6 6 2.2583 -1.1415 -0.0058 7 6 1.7283 -2.5082 -0.0120 8 8 0.5257 -2.6946 -0.0127 9 7 2.5730 -3.5584 -0.0168 10 6 2.0434 -4.9243 -0.0236 11 6 3.1866 -5.9063 -0.0274 12 6 3.2364 -6.8571 0.8724 13 6 2.0712 -7.0760 1.8027 14 7 1.6577 -8.4802 1.7454 15 6 0.6099 -8.9172 2.5111 16 1 0.0881 -8.2265 3.1569 17 6 0.2177 -10.2477 2.4564 18 7 0.8533 -11.0892 1.6690 19 14 -1.2112 -10.8439 3.5015 20 1 -2.4770 -10.6977 2.7388 21 1 -1.0063 -12.2724 3.8514 22 1 -1.2863 -10.0354 4.7449 23 1 -0.3633 -0.0052 1.0276 24 1 -0.3633 0.8926 -0.5093 25 1 -0.3633 -0.8874 -0.5184 26 1 1.8202 2.1334 -0.0004 27 1 4.3206 1.7489 0.0094 28 1 3.5315 -3.4099 -0.0166 29 1 1.4328 -5.0816 0.8656 30 1 1.4331 -5.0731 -0.9143 31 1 3.9647 -5.8262 -0.7721 32 1 4.1125 -7.4840 0.9475 33 1 2.3675 -6.8257 2.8213 34 1 1.2397 -6.4397 1.4994 35 1 2.1257 -9.1003 1.1645 36 1 0.5790 -12.0188 1.6305 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001699223218.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:16:00 Heat of formation + Delta-G solvation = 5.502918 kcal Electronic energy + Delta-G solvation = -18336.356069 eV Core-core repulsion = 15333.158739 eV Total energy + Delta-G solvation = -3003.197330 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 280.099 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.97958 -38.93850 -37.89035 -36.13090 -34.48091 -32.44915 -31.83441 -29.71159 -27.77734 -26.36401 -24.46118 -24.37546 -22.42481 -20.73667 -19.65155 -19.14555 -18.64146 -17.49994 -16.88176 -16.67631 -16.51083 -16.06582 -15.58065 -15.32588 -15.07979 -14.80201 -14.49627 -14.23895 -14.03120 -13.86694 -13.33952 -13.23563 -13.05663 -12.92545 -12.74889 -12.70639 -12.18235 -11.91992 -11.85575 -11.68321 -11.11942 -11.01654 -10.45068 -10.05572 -9.72931 -9.37283 -9.00874 -7.98733 -5.28299 -0.49108 0.51352 0.93266 1.01359 1.39606 1.46074 1.48271 1.56790 2.11702 2.24645 2.55426 3.34750 3.71741 3.85241 3.98529 4.09646 4.16045 4.25422 4.32025 4.40120 4.56996 4.66574 4.77157 4.82575 4.89641 5.00185 5.02071 5.08913 5.26881 5.39022 5.44773 5.52599 5.55506 5.82863 6.24050 6.41307 7.08730 7.30065 8.03370 8.28540 9.24753 Molecular weight = 280.10amu Principal moments of inertia in cm(-1) A = 0.030148 B = 0.002934 C = 0.002748 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 928.538666 B = 9539.623259 C =10185.618174 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.106 4.106 2 C -0.028 4.028 3 C -0.161 4.161 4 C -0.212 4.212 5 S 0.233 5.767 6 C -0.314 4.314 7 C 0.582 3.418 8 O -0.569 6.569 9 N -0.709 5.709 10 C 0.143 3.857 11 C -0.162 4.162 12 C -0.130 4.130 13 C 0.160 3.840 14 N -0.741 5.741 15 C -0.252 4.252 16 H 0.073 0.927 17 C -0.073 4.073 18 N -0.968 5.968 19 Si 0.976 3.024 20 H -0.287 1.287 21 H -0.291 1.291 22 H -0.270 1.270 23 H 0.073 0.927 24 H 0.089 0.911 25 H 0.065 0.935 26 H 0.168 0.832 27 H 0.203 0.797 28 H 0.410 0.590 29 H 0.066 0.934 30 H 0.066 0.934 31 H 0.151 0.849 32 H 0.127 0.873 33 H 0.025 0.975 34 H 0.032 0.968 35 H 0.376 0.624 36 H 0.253 0.747 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.264 27.818 -5.697 30.194 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C -0.044 4.044 3 C -0.191 4.191 4 C -0.350 4.350 5 S 0.502 5.498 6 C -0.433 4.433 7 C 0.370 3.630 8 O -0.450 6.450 9 N -0.360 5.360 10 C 0.020 3.980 11 C -0.181 4.181 12 C -0.149 4.149 13 C 0.034 3.966 14 N -0.384 5.384 15 C -0.383 4.383 16 H 0.091 0.909 17 C -0.266 4.266 18 N -0.618 5.618 19 Si 0.804 3.196 20 H -0.214 1.214 21 H -0.217 1.217 22 H -0.194 1.194 23 H 0.091 0.909 24 H 0.107 0.893 25 H 0.084 0.916 26 H 0.186 0.814 27 H 0.220 0.780 28 H 0.247 0.753 29 H 0.084 0.916 30 H 0.084 0.916 31 H 0.169 0.831 32 H 0.145 0.855 33 H 0.043 0.957 34 H 0.050 0.950 35 H 0.208 0.792 36 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges 10.691 26.862 -5.562 29.442 hybrid contribution -1.607 -0.104 0.320 1.642 sum 9.084 26.758 -5.242 28.740 Atomic orbital electron populations 1.20714 0.89155 1.03693 1.02923 1.19836 0.98137 0.91236 0.95239 1.20115 0.92883 0.99837 1.06295 1.25741 1.01023 1.02153 1.06079 1.82789 1.00995 0.98796 1.67268 1.24356 0.99829 0.96165 1.22986 1.17363 0.85816 0.84020 0.75786 1.90782 1.16138 1.86031 1.52060 1.45722 1.10164 1.05148 1.74985 1.20419 0.95607 0.79669 1.02316 1.22783 0.99593 0.96784 0.98989 1.23055 0.98003 0.98418 0.95473 1.20091 0.94035 0.85839 0.96606 1.42467 1.38213 1.05883 1.51823 1.19636 1.07586 0.93581 1.17506 0.90887 1.25603 1.02729 0.96424 1.01835 1.69813 1.44587 1.03964 1.43450 0.85114 0.78835 0.77135 0.78525 1.21357 1.21696 1.19437 0.90889 0.89254 0.91599 0.81433 0.78021 0.75314 0.91616 0.91551 0.83131 0.85480 0.95706 0.95011 0.79180 0.93796 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.22 9.55 71.24 0.68 -1.54 16 2 C -0.03 -0.58 5.90 -20.42 -0.12 -0.70 16 3 C -0.16 -2.20 9.97 21.08 0.21 -1.99 16 4 C -0.21 -2.25 10.92 66.81 0.73 -1.52 16 5 S 0.23 3.12 22.16 -56.49 -1.25 1.87 16 6 C -0.31 -6.98 6.45 24.08 0.16 -6.82 16 7 C 0.58 16.66 7.78 86.42 0.67 17.33 16 8 O -0.57 -20.79 14.24 -4.36 -0.06 -20.85 16 9 N -0.71 -17.37 5.54 -470.89 -2.61 -19.98 16 10 C 0.14 4.14 5.76 85.63 0.49 4.64 16 11 C -0.16 -4.17 9.63 25.65 0.25 -3.93 16 12 C -0.13 -4.13 9.63 25.65 0.25 -3.88 16 13 C 0.16 6.68 6.35 85.63 0.54 7.22 16 14 N -0.74 -39.24 5.59 -347.18 -1.94 -41.19 16 15 C -0.25 -14.64 9.99 84.04 0.84 -13.80 16 16 H 0.07 4.12 7.83 -2.91 -0.02 4.10 16 17 C -0.07 -4.34 5.50 84.86 0.47 -3.87 16 18 N -0.97 -60.32 13.06 21.65 0.28 -60.03 16 19 Si 0.98 47.31 29.55 68.60 2.03 49.34 16 20 H -0.29 -13.69 7.11 99.48 0.71 -12.99 16 21 H -0.29 -13.97 7.11 99.48 0.71 -13.26 16 22 H -0.27 -12.41 7.11 99.48 0.71 -11.70 16 23 H 0.07 1.52 8.14 -2.39 -0.02 1.50 16 24 H 0.09 1.33 8.14 -2.38 -0.02 1.31 16 25 H 0.07 1.78 6.01 -2.39 -0.01 1.76 16 26 H 0.17 1.44 8.06 -2.91 -0.02 1.41 16 27 H 0.20 0.75 8.06 -2.91 -0.02 0.73 16 28 H 0.41 7.41 7.58 -92.71 -0.70 6.71 16 29 H 0.07 2.28 5.30 -2.38 -0.01 2.27 16 30 H 0.07 2.06 8.14 -2.39 -0.02 2.04 16 31 H 0.15 2.82 8.06 -2.91 -0.02 2.79 16 32 H 0.13 3.72 8.06 -2.92 -0.02 3.70 16 33 H 0.03 1.06 8.14 -2.39 -0.02 1.04 16 34 H 0.03 1.38 5.30 -2.38 -0.01 1.36 16 35 H 0.38 20.84 7.66 -92.71 -0.71 20.13 16 36 H 0.25 15.19 8.31 -92.71 -0.77 14.42 16 Total: -1.00 -73.70 321.67 1.31 -72.39 By element: Atomic # 1 Polarization: 27.60 SS G_CDS: -0.30 Total: 27.31 kcal Atomic # 6 Polarization: -14.03 SS G_CDS: 5.16 Total: -8.86 kcal Atomic # 7 Polarization: -116.93 SS G_CDS: -4.27 Total: -121.20 kcal Atomic # 8 Polarization: -20.79 SS G_CDS: -0.06 Total: -20.85 kcal Atomic # 14 Polarization: 47.31 SS G_CDS: 2.03 Total: 49.34 kcal Atomic # 16 Polarization: 3.12 SS G_CDS: -1.25 Total: 1.87 kcal Total: -73.70 1.31 -72.39 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001699223218.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.894 kcal (2) G-P(sol) polarization free energy of solvation -73.703 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.191 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.312 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.392 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.503 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds