Wall clock time and date at job start Fri Apr 10 2020 17:14:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 N 1.46498 * 109.47532 * 2 1 4 4 C 1.46496 * 119.99742 * 270.00301 * 3 2 1 5 5 C 1.50709 * 109.47033 * 269.99810 * 4 3 2 6 6 H 1.08003 * 119.99692 * 359.97438 * 5 4 3 7 7 C 1.37871 * 120.00105 * 180.02562 * 5 4 3 8 8 N 1.31511 * 120.00157 * 359.97438 * 7 5 4 9 9 Si 1.86799 * 120.00060 * 179.97438 * 7 5 4 10 10 H 1.48496 * 109.47346 * 59.99545 * 9 7 5 11 11 H 1.48498 * 109.47217 * 179.97438 * 9 7 5 12 12 H 1.48507 * 109.46935 * 299.99981 * 9 7 5 13 13 C 1.34776 * 120.00223 * 89.99514 * 3 2 1 14 14 O 1.21277 * 120.00300 * 180.02562 * 13 3 2 15 15 C 1.50700 * 119.99821 * 0.02562 * 13 3 2 16 16 S 1.81404 * 109.47023 * 179.97438 * 15 13 3 17 17 C 1.76200 * 102.99864 * 179.97438 * 16 15 13 18 18 C 1.39542 * 120.87285 * 359.71968 * 17 16 15 19 19 C 1.37866 * 119.05886 * 180.29714 * 18 17 16 20 20 N 1.32014 * 120.85190 * 359.97204 * 19 18 17 21 21 C 1.32012 * 121.92014 * 0.02562 * 20 19 18 22 22 C 1.37861 * 120.85403 * 0.02562 * 21 20 19 23 23 H 1.09001 * 109.46968 * 59.99839 * 1 2 3 24 24 H 1.08992 * 109.47242 * 180.02562 * 1 2 3 25 25 H 1.09001 * 109.46710 * 300.00365 * 1 2 3 26 26 H 1.08993 * 109.46950 * 239.99559 * 2 1 3 27 27 H 1.09007 * 109.46929 * 119.99725 * 2 1 3 28 28 H 1.09004 * 109.47462 * 29.99526 * 4 3 2 29 29 H 1.09004 * 109.47242 * 149.99829 * 4 3 2 30 30 H 0.97003 * 120.00068 * 180.02562 * 8 7 5 31 31 H 1.08995 * 109.47674 * 59.99405 * 15 13 3 32 32 H 1.09006 * 109.47002 * 299.99436 * 15 13 3 33 33 H 1.08005 * 120.47247 * 0.25131 * 18 17 16 34 34 H 1.08000 * 119.57367 * 179.97438 * 19 18 17 35 35 H 1.07999 * 119.57604 * 179.97438 * 21 20 19 36 36 H 1.07997 * 120.47580 * 180.02562 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0185 1.3812 0.0000 4 6 2.2626 2.0717 -1.2687 5 6 3.6859 1.8348 -1.7038 6 1 4.3430 1.2306 -1.0958 7 6 4.1495 2.3902 -2.8775 8 7 3.3496 3.1262 -3.6176 9 14 5.9139 2.0971 -3.4164 10 1 6.1418 0.6406 -3.5942 11 1 6.1614 2.7970 -4.7025 12 1 6.8411 2.6204 -2.3811 13 6 2.2430 2.0166 1.1672 14 8 2.6469 3.1601 1.1672 15 6 1.9923 1.3060 2.4723 16 16 2.3858 2.4173 3.8511 17 6 2.0363 1.4299 5.2680 18 6 1.5674 0.1227 5.1319 19 6 1.3001 -0.6143 6.2659 20 7 1.4831 -0.0985 7.4673 21 6 1.9251 1.1336 7.6380 22 6 2.2150 1.9370 6.5558 23 1 -0.3633 0.5139 -0.8900 24 1 -0.3633 -1.0276 0.0005 25 1 -0.3633 0.5139 0.8900 26 1 1.8933 -0.5139 -0.8899 27 1 1.8934 -0.5138 0.8901 28 1 1.5818 1.6876 -2.0284 29 1 2.0957 3.1410 -1.1384 30 1 3.6757 3.5167 -4.4436 31 1 2.6226 0.4187 2.5299 32 1 0.9443 1.0116 2.5302 33 1 1.4152 -0.3053 4.1520 34 1 0.9364 -1.6267 6.1702 35 1 2.0607 1.5175 8.6383 36 1 2.5767 2.9440 6.7025 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000103209750.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:14:36 Heat of formation + Delta-G solvation = 1.091670 kcal Electronic energy + Delta-G solvation = -18899.578718 eV Core-core repulsion = 15896.190102 eV Total energy + Delta-G solvation = -3003.388616 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 280.099 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.04746 -39.20341 -35.49788 -32.97561 -32.69630 -31.59772 -30.35415 -29.94267 -26.79984 -23.97880 -23.65365 -23.16347 -22.65213 -18.98540 -17.98174 -16.86451 -16.50189 -16.45066 -15.92776 -15.76130 -15.21431 -14.92326 -14.27668 -14.13680 -13.87468 -13.54711 -13.47939 -13.19839 -12.76264 -12.17277 -12.09952 -12.01414 -11.75879 -11.28614 -11.01097 -10.89371 -10.74017 -10.64195 -10.40799 -10.20758 -9.74556 -9.60348 -9.42716 -9.22025 -8.49346 -7.86461 -7.64985 -6.10745 -4.16173 0.89045 0.93269 1.20576 2.23766 3.12215 3.28354 3.33202 3.36508 3.57275 3.72299 4.24511 4.39112 4.56262 4.73434 4.76722 4.91678 4.94926 5.05617 5.23692 5.24208 5.28087 5.48379 5.53279 5.58140 5.62665 5.79105 5.88842 6.10261 6.35292 6.42419 6.90238 7.32277 7.39041 7.77037 7.84267 8.14082 8.19689 8.73462 8.90637 9.49184 10.97398 Molecular weight = 280.10amu Principal moments of inertia in cm(-1) A = 0.026741 B = 0.003827 C = 0.003618 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1046.831193 B = 7314.335889 C = 7738.024517 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.104 3.896 3 N -0.588 5.588 4 C 0.248 3.752 5 C -0.531 4.531 6 H 0.057 0.943 7 C 0.063 3.937 8 N -0.894 5.894 9 Si 0.899 3.101 10 H -0.277 1.277 11 H -0.286 1.286 12 H -0.276 1.276 13 C 0.523 3.477 14 O -0.522 6.522 15 C -0.152 4.152 16 S -0.005 6.005 17 C -0.058 4.058 18 C -0.194 4.194 19 C 0.118 3.882 20 N -0.499 5.499 21 C 0.115 3.885 22 C -0.158 4.158 23 H 0.063 0.937 24 H 0.062 0.938 25 H 0.049 0.951 26 H 0.087 0.913 27 H 0.063 0.937 28 H 0.035 0.965 29 H 0.045 0.955 30 H 0.265 0.735 31 H 0.113 0.887 32 H 0.112 0.888 33 H 0.134 0.866 34 H 0.157 0.843 35 H 0.159 0.841 36 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.995 -8.015 16.102 18.960 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C -0.021 4.021 3 N -0.321 5.321 4 C 0.129 3.871 5 C -0.570 4.570 6 H 0.075 0.925 7 C -0.140 4.140 8 N -0.532 5.532 9 Si 0.726 3.274 10 H -0.202 1.202 11 H -0.211 1.211 12 H -0.201 1.201 13 C 0.306 3.694 14 O -0.398 6.398 15 C -0.303 4.303 16 S 0.239 5.761 17 C -0.180 4.180 18 C -0.221 4.221 19 C -0.040 4.040 20 N -0.210 5.210 21 C -0.043 4.043 22 C -0.185 4.185 23 H 0.083 0.917 24 H 0.081 0.919 25 H 0.068 0.932 26 H 0.105 0.895 27 H 0.081 0.919 28 H 0.053 0.947 29 H 0.063 0.937 30 H 0.074 0.926 31 H 0.131 0.869 32 H 0.130 0.870 33 H 0.152 0.848 34 H 0.174 0.826 35 H 0.176 0.824 36 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges -5.559 -6.630 16.411 18.552 hybrid contribution 0.646 -1.127 -1.137 1.727 sum -4.914 -7.757 15.273 17.821 Atomic orbital electron populations 1.22233 0.96530 1.01643 1.02469 1.21485 0.93689 0.83993 1.02902 1.48197 1.63265 1.13328 1.07264 1.19341 0.96502 0.93690 0.77576 1.21371 0.96799 1.32325 1.06462 0.92460 1.24925 0.97940 0.94785 0.96319 1.69915 1.35799 1.33164 1.14352 0.86546 0.84655 0.78276 0.77891 1.20223 1.21109 1.20099 1.19238 0.79458 0.86776 0.83898 1.90734 1.45294 1.17431 1.86387 1.24069 1.06601 1.03082 0.96582 1.86458 1.80644 1.16887 0.92107 1.22840 0.98290 0.97496 0.99330 1.22153 1.04415 0.94402 1.01129 1.22632 0.94538 0.99556 0.87277 1.67748 1.13647 1.13586 1.26032 1.22678 0.93451 0.89309 0.98838 1.21748 1.03581 1.01968 0.91188 0.91747 0.91923 0.93167 0.89478 0.91863 0.94682 0.93697 0.92555 0.86876 0.86960 0.84781 0.82623 0.82407 0.84239 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.06 10.24 37.16 0.38 -1.68 16 2 C 0.10 1.51 5.93 -4.04 -0.02 1.48 16 3 N -0.59 -11.71 2.46 -175.06 -0.43 -12.14 16 4 C 0.25 6.24 5.16 -5.19 -0.03 6.21 16 5 C -0.53 -14.67 9.39 -34.44 -0.32 -15.00 16 6 H 0.06 1.58 7.81 -52.48 -0.41 1.17 16 7 C 0.06 1.76 5.46 -17.82 -0.10 1.66 16 8 N -0.89 -26.10 13.29 55.43 0.74 -25.36 16 9 Si 0.90 21.53 29.54 -169.99 -5.02 16.51 16 10 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 11 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16 12 H -0.28 -6.66 7.11 56.52 0.40 -6.25 16 13 C 0.52 10.33 7.69 -10.99 -0.08 10.24 16 14 O -0.52 -12.74 15.44 5.56 0.09 -12.65 16 15 C -0.15 -2.12 3.41 36.01 0.12 -2.00 16 16 S -0.01 -0.08 21.10 -107.50 -2.27 -2.35 16 17 C -0.06 -0.70 6.17 -38.60 -0.24 -0.93 16 18 C -0.19 -2.04 9.43 -39.23 -0.37 -2.41 16 19 C 0.12 1.19 11.17 -17.61 -0.20 0.99 16 20 N -0.50 -5.67 10.36 -13.36 -0.14 -5.81 16 21 C 0.11 1.15 11.17 -17.61 -0.20 0.95 16 22 C -0.16 -1.69 9.90 -39.23 -0.39 -2.08 16 23 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 24 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 25 H 0.05 0.57 7.22 -51.93 -0.38 0.19 16 26 H 0.09 1.33 8.07 -51.93 -0.42 0.91 16 27 H 0.06 0.73 6.44 -51.92 -0.33 0.40 16 28 H 0.04 0.89 8.07 -51.93 -0.42 0.47 16 29 H 0.05 1.29 7.42 -51.93 -0.39 0.90 16 30 H 0.26 7.33 8.31 -40.82 -0.34 6.99 16 31 H 0.11 1.35 7.07 -51.93 -0.37 0.98 16 32 H 0.11 1.28 6.83 -51.92 -0.35 0.92 16 33 H 0.13 1.17 6.08 -52.48 -0.32 0.85 16 34 H 0.16 1.12 8.06 -52.49 -0.42 0.70 16 35 H 0.16 1.10 8.06 -52.49 -0.42 0.67 16 36 H 0.14 1.27 8.06 -52.49 -0.42 0.85 16 LS Contribution 322.40 15.07 4.86 4.86 Total: -1.00 -33.22 322.40 -8.25 -41.47 By element: Atomic # 1 Polarization: 2.66 SS G_CDS: -4.63 Total: -1.98 kcal Atomic # 6 Polarization: -1.11 SS G_CDS: -1.44 Total: -2.55 kcal Atomic # 7 Polarization: -43.48 SS G_CDS: 0.17 Total: -43.31 kcal Atomic # 8 Polarization: -12.74 SS G_CDS: 0.09 Total: -12.65 kcal Atomic # 14 Polarization: 21.53 SS G_CDS: -5.02 Total: 16.51 kcal Atomic # 16 Polarization: -0.08 SS G_CDS: -2.27 Total: -2.35 kcal Total LS contribution 4.86 Total: 4.86 kcal Total: -33.22 -8.25 -41.47 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000103209750.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.566 kcal (2) G-P(sol) polarization free energy of solvation -33.223 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.344 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.252 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.474 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.092 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds