Wall clock time and date at job start Fri Apr 10 2020 17:14:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81396 * 1 3 3 C 1.76200 * 102.99948 * 2 1 4 4 C 1.38942 * 120.01424 * 180.02562 * 3 2 1 5 5 C 1.38050 * 119.99137 * 180.29960 * 4 3 2 6 6 C 1.38849 * 120.00829 * 359.44043 * 5 4 3 7 7 N 1.40203 * 119.98656 * 180.25628 * 6 5 4 8 8 C 1.34780 * 119.99576 * 145.21268 * 7 6 5 9 9 O 1.21589 * 120.00396 * 4.58024 * 8 7 6 10 10 N 1.34778 * 119.99503 * 184.58538 * 8 7 6 11 11 C 1.46500 * 120.00023 * 359.97438 * 10 8 7 12 12 C 1.46503 * 119.99673 * 179.97438 * 10 8 7 13 13 C 1.50699 * 109.47070 * 90.00292 * 12 10 8 14 14 H 1.07997 * 119.99938 * 359.97438 * 13 12 10 15 15 C 1.37874 * 119.99779 * 180.02562 * 13 12 10 16 16 N 1.31515 * 120.00390 * 359.97438 * 15 13 12 17 17 Si 1.86808 * 119.99622 * 179.97438 * 15 13 12 18 18 H 1.48497 * 109.46955 * 59.99613 * 17 15 13 19 19 H 1.48502 * 109.46925 * 179.97438 * 17 15 13 20 20 H 1.48497 * 109.46969 * 299.99495 * 17 15 13 21 21 C 1.38848 * 120.02543 * 0.56202 * 6 5 4 22 22 C 1.38060 * 120.00696 * 359.71459 * 21 6 5 23 23 H 1.08995 * 109.47537 * 60.00216 * 1 2 3 24 24 H 1.09004 * 109.47129 * 180.02562 * 1 2 3 25 25 H 1.09004 * 109.47286 * 299.99964 * 1 2 3 26 26 H 1.07999 * 119.99924 * 0.02562 * 4 3 2 27 27 H 1.08002 * 119.99272 * 179.70417 * 5 4 3 28 28 H 0.97000 * 120.00243 * 325.20252 * 7 6 5 29 29 H 1.09000 * 109.47116 * 90.00298 * 11 10 8 30 30 H 1.09003 * 109.46511 * 209.99362 * 11 10 8 31 31 H 1.08991 * 109.47177 * 329.99853 * 11 10 8 32 32 H 1.09000 * 109.47187 * 209.99909 * 12 10 8 33 33 H 1.09001 * 109.47339 * 330.00055 * 12 10 8 34 34 H 0.96999 * 119.99729 * 180.02562 * 16 15 13 35 35 H 1.07999 * 120.00101 * 179.70051 * 21 6 5 36 36 H 1.08000 * 120.00273 * 179.97438 * 22 21 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2103 1.7168 0.0000 4 6 3.5389 2.1234 -0.0005 5 6 3.8489 3.4686 0.0057 6 6 2.8332 4.4154 0.0008 7 7 3.1486 5.7815 0.0017 8 6 2.3691 6.6534 -0.6681 9 8 1.3474 6.2687 -1.2033 10 7 2.7223 7.9518 -0.7447 11 6 3.9532 8.4154 -0.0994 12 6 1.8753 8.8995 -1.4732 13 6 0.8593 9.4922 -0.5311 14 1 0.8456 9.1926 0.5064 15 6 -0.0533 10.4162 -0.9940 16 7 -0.0370 10.7807 -2.2575 17 14 -1.3132 11.1503 0.1737 18 1 -0.6133 11.8582 1.2756 19 1 -2.1717 12.1111 -0.5648 20 1 -2.1557 10.0657 0.7384 21 6 1.5053 4.0097 0.0014 22 6 1.1943 2.6646 0.0009 23 1 -0.3634 0.5138 -0.8899 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3634 0.5138 0.8900 26 1 4.3289 1.3871 -0.0014 27 1 4.8817 3.7847 0.0101 28 1 3.9277 6.0991 0.4845 29 1 4.7832 8.3368 -0.8015 30 1 3.8335 9.4547 0.2068 31 1 4.1584 7.7998 0.7763 32 1 2.4940 9.6954 -1.8878 33 1 1.3613 8.3802 -2.2820 34 1 -0.6789 11.4310 -2.5830 35 1 0.7156 4.7464 0.0024 36 1 0.1614 2.3491 0.0018 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000107346883.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:14:45 Heat of formation + Delta-G solvation = -12.338593 kcal Electronic energy + Delta-G solvation = -19066.502836 eV Core-core repulsion = 16062.531840 eV Total energy + Delta-G solvation = -3003.970996 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 280.099 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -41.66187 -39.67895 -36.73573 -35.86378 -34.63082 -32.19422 -30.97311 -29.77416 -29.32055 -27.37099 -25.28597 -23.85235 -23.27191 -20.98263 -19.37587 -18.73257 -18.55048 -18.24335 -16.87779 -16.65924 -16.11380 -16.01493 -15.44925 -15.24718 -14.93262 -14.70201 -14.54431 -14.37434 -13.96052 -13.72190 -13.64889 -13.48269 -13.18120 -12.95015 -12.81054 -12.53952 -12.36108 -12.18952 -11.77838 -11.63313 -11.36193 -10.91497 -10.64448 -9.97343 -9.95551 -9.42196 -8.24788 -8.14289 -6.37477 0.14563 0.38301 0.62709 1.36372 1.40404 1.47194 1.48029 1.71442 2.12262 2.38342 2.76080 3.03547 3.08304 3.85086 3.96763 4.24625 4.26865 4.28134 4.33662 4.44372 4.56023 4.65185 4.79091 4.85902 4.92567 4.98556 5.08374 5.18890 5.28094 5.35841 5.49464 5.54338 5.77688 5.98206 6.05045 6.07170 6.71020 7.03420 7.29642 7.60602 8.84097 Molecular weight = 280.10amu Principal moments of inertia in cm(-1) A = 0.024680 B = 0.003737 C = 0.003383 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1134.234289 B = 7490.847417 C = 8274.978986 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 S -0.131 6.131 3 C -0.114 4.114 4 C -0.080 4.080 5 C -0.121 4.121 6 C 0.151 3.849 7 N -0.675 5.675 8 C 0.692 3.308 9 O -0.621 6.621 10 N -0.620 5.620 11 C 0.077 3.923 12 C 0.276 3.724 13 C -0.545 4.545 14 H 0.052 0.948 15 C 0.009 3.991 16 N -0.928 5.928 17 Si 0.967 3.033 18 H -0.260 1.260 19 H -0.278 1.278 20 H -0.280 1.280 21 C -0.128 4.128 22 C -0.119 4.119 23 H 0.083 0.917 24 H 0.129 0.871 25 H 0.088 0.912 26 H 0.157 0.843 27 H 0.164 0.836 28 H 0.421 0.579 29 H 0.073 0.927 30 H 0.074 0.926 31 H 0.087 0.913 32 H 0.030 0.970 33 H -0.001 1.001 34 H 0.268 0.732 35 H 0.109 0.891 36 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.360 -17.918 7.820 21.675 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.310 4.310 2 S 0.110 5.890 3 C -0.227 4.227 4 C -0.103 4.103 5 C -0.143 4.143 6 C 0.054 3.946 7 N -0.326 5.326 8 C 0.394 3.606 9 O -0.501 6.501 10 N -0.354 5.354 11 C -0.065 4.065 12 C 0.154 3.846 13 C -0.584 4.584 14 H 0.070 0.930 15 C -0.190 4.190 16 N -0.567 5.567 17 Si 0.791 3.209 18 H -0.184 1.184 19 H -0.203 1.203 20 H -0.205 1.205 21 C -0.151 4.151 22 C -0.143 4.143 23 H 0.102 0.898 24 H 0.147 0.853 25 H 0.107 0.893 26 H 0.174 0.826 27 H 0.181 0.819 28 H 0.261 0.739 29 H 0.092 0.908 30 H 0.092 0.908 31 H 0.105 0.895 32 H 0.048 0.952 33 H 0.017 0.983 34 H 0.077 0.923 35 H 0.127 0.873 36 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges 9.227 -18.991 7.283 22.334 hybrid contribution -1.565 2.133 0.342 2.668 sum 7.662 -16.857 7.624 20.025 Atomic orbital electron populations 1.23764 0.92715 1.08412 1.06082 1.85195 1.08885 1.01882 1.93018 1.21814 0.96906 0.97088 1.06931 1.20848 0.94524 0.95606 0.99342 1.21070 0.99159 0.91402 1.02695 1.17851 0.93735 0.82588 1.00471 1.42641 1.31510 1.04583 1.53899 1.16127 0.83034 0.81700 0.79784 1.90850 1.27543 1.78146 1.53535 1.47372 1.26124 1.05920 1.56006 1.21913 0.84952 1.01886 0.97719 1.18701 0.88870 0.86022 0.90969 1.21692 1.16602 1.23879 0.96197 0.92967 1.25832 0.99346 0.96887 0.96927 1.70038 1.37795 1.33257 1.15626 0.85484 0.78569 0.77963 0.78874 1.18418 1.20256 1.20540 1.21209 0.96370 0.96218 1.01277 1.21134 0.99245 0.91862 1.02034 0.89791 0.85284 0.89284 0.82552 0.81888 0.73873 0.90823 0.90763 0.89501 0.95169 0.98303 0.92342 0.87251 0.84888 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.08 9.15 113.37 1.04 -1.04 16 2 S -0.13 -2.57 22.56 -56.49 -1.27 -3.84 16 3 C -0.11 -2.80 6.11 22.61 0.14 -2.66 16 4 C -0.08 -1.72 9.78 22.39 0.22 -1.50 16 5 C -0.12 -2.73 9.96 22.37 0.22 -2.51 16 6 C 0.15 4.64 6.30 38.09 0.24 4.88 16 7 N -0.67 -21.25 5.22 -316.99 -1.66 -22.91 16 8 C 0.69 30.07 8.12 179.05 1.45 31.53 16 9 O -0.62 -33.32 13.36 -3.99 -0.05 -33.37 16 10 N -0.62 -26.48 2.86 -869.31 -2.48 -28.97 16 11 C 0.08 2.22 10.24 127.77 1.31 3.53 16 12 C 0.28 14.95 5.16 85.63 0.44 15.39 16 13 C -0.55 -31.53 9.39 25.60 0.24 -31.29 16 14 H 0.05 2.99 7.81 -2.91 -0.02 2.97 16 15 C 0.01 0.53 5.46 84.65 0.46 1.00 16 16 N -0.93 -56.15 13.29 21.45 0.28 -55.87 16 17 Si 0.97 44.98 29.54 68.60 2.03 47.00 16 18 H -0.26 -11.30 7.11 99.48 0.71 -10.59 16 19 H -0.28 -12.45 7.11 99.48 0.71 -11.74 16 20 H -0.28 -13.08 7.11 99.48 0.71 -12.37 16 21 C -0.13 -4.48 8.69 22.37 0.19 -4.29 16 22 C -0.12 -3.39 9.36 22.40 0.21 -3.18 16 23 H 0.08 1.30 7.75 -2.39 -0.02 1.28 16 24 H 0.13 1.28 8.14 -2.39 -0.02 1.27 16 25 H 0.09 1.26 7.74 -2.39 -0.02 1.24 16 26 H 0.16 2.48 8.06 -2.91 -0.02 2.46 16 27 H 0.16 2.47 8.06 -2.91 -0.02 2.45 16 28 H 0.42 9.53 6.52 -92.71 -0.60 8.92 16 29 H 0.07 1.73 8.14 -2.39 -0.02 1.71 16 30 H 0.07 2.23 8.07 -2.39 -0.02 2.21 16 31 H 0.09 1.83 6.30 -2.39 -0.02 1.81 16 32 H 0.03 1.64 8.07 -2.39 -0.02 1.62 16 33 H 0.00 -0.07 7.42 -2.39 -0.02 -0.09 16 34 H 0.27 15.21 8.31 -92.71 -0.77 14.44 16 35 H 0.11 4.67 6.22 -2.91 -0.02 4.65 16 36 H 0.13 3.35 5.87 -2.91 -0.02 3.33 16 Total: -1.00 -76.05 318.34 3.51 -72.55 By element: Atomic # 1 Polarization: 15.06 SS G_CDS: 0.49 Total: 15.55 kcal Atomic # 6 Polarization: 3.69 SS G_CDS: 6.17 Total: 9.86 kcal Atomic # 7 Polarization: -103.89 SS G_CDS: -3.85 Total: -107.74 kcal Atomic # 8 Polarization: -33.32 SS G_CDS: -0.05 Total: -33.37 kcal Atomic # 14 Polarization: 44.98 SS G_CDS: 2.03 Total: 47.00 kcal Atomic # 16 Polarization: -2.57 SS G_CDS: -1.27 Total: -3.84 kcal Total: -76.05 3.51 -72.55 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000107346883.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.207 kcal (2) G-P(sol) polarization free energy of solvation -76.052 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.845 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.506 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.546 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.339 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds