Wall clock time and date at job start Fri Apr 10 2020 17:14:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.34773 * 120.00240 * 2 1 4 4 O 1.21596 * 119.99731 * 359.97438 * 3 2 1 5 5 N 1.34771 * 119.99838 * 180.27663 * 3 2 1 6 6 C 1.40194 * 119.99742 * 175.47906 * 5 3 2 7 7 C 1.38630 * 120.09900 * 34.53349 * 6 5 3 8 8 C 1.38265 * 120.00948 * 179.74792 * 7 6 5 9 9 C 1.38294 * 120.20570 * 0.54948 * 8 7 6 10 10 C 1.38207 * 120.19451 * 359.69911 * 9 8 7 11 11 C 1.38774 * 119.99128 * 0.02799 * 10 9 8 12 12 S 1.76195 * 120.10441 * 179.97438 * 11 10 9 13 13 C 1.81394 * 103.00027 * 4.48352 * 12 11 10 14 14 H 1.08992 * 109.47290 * 49.61363 * 13 12 11 15 15 C 1.53003 * 109.47250 * 169.61621 * 13 12 11 16 16 C 1.50701 * 109.47079 * 289.61472 * 13 12 11 17 17 H 1.08000 * 120.00326 * 359.97438 * 16 13 12 18 18 C 1.37887 * 119.99947 * 180.02562 * 16 13 12 19 19 N 1.31508 * 119.99762 * 359.97438 * 18 16 13 20 20 Si 1.86793 * 119.99826 * 179.97438 * 18 16 13 21 21 H 1.48500 * 109.47528 * 359.97438 * 20 18 16 22 22 H 1.48501 * 109.47243 * 119.99697 * 20 18 16 23 23 H 1.48499 * 109.47322 * 239.99908 * 20 18 16 24 24 H 1.09002 * 109.47201 * 300.00244 * 1 2 3 25 25 H 1.08999 * 109.47072 * 60.00340 * 1 2 3 26 26 H 1.09003 * 109.47131 * 180.02562 * 1 2 3 27 27 H 0.97006 * 119.99664 * 179.97438 * 2 1 3 28 28 H 0.97004 * 120.00460 * 355.47527 * 5 3 2 29 29 H 1.07997 * 119.99227 * 359.97438 * 7 6 5 30 30 H 1.08003 * 119.89718 * 180.29762 * 8 7 6 31 31 H 1.07997 * 119.90201 * 179.72802 * 9 8 7 32 32 H 1.07998 * 120.00681 * 180.02562 * 10 9 8 33 33 H 1.08996 * 109.47255 * 65.14253 * 15 13 12 34 34 H 1.09004 * 109.47202 * 185.14550 * 15 13 12 35 35 H 1.09007 * 109.47026 * 305.14020 * 15 13 12 36 36 H 0.97005 * 119.99848 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1671 0.0000 4 8 1.5309 2.2202 -0.0005 5 7 3.4866 1.1671 -0.0056 6 6 4.1872 2.3776 -0.1013 7 6 3.6817 3.5225 0.4949 8 6 4.3768 4.7142 0.4038 9 6 5.5712 4.7716 -0.2908 10 6 6.0805 3.6366 -0.8929 11 6 5.3924 2.4349 -0.8018 12 16 6.0385 0.9862 -1.5688 13 6 7.6415 1.5438 -2.2090 14 1 8.1884 2.0596 -1.4199 15 6 8.4499 0.3345 -2.6834 16 6 7.4208 2.4852 -3.3650 17 1 6.4166 2.7238 -3.6830 18 6 8.5009 3.0411 -4.0173 19 7 9.7236 2.7501 -3.6304 20 14 8.2273 4.2073 -5.4506 21 1 6.7700 4.3689 -5.6862 22 1 8.8276 5.5285 -5.1353 23 1 8.8667 3.6514 -6.6702 24 1 -0.3634 0.5139 0.8900 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0277 0.0005 27 1 1.9500 -0.8401 0.0004 28 1 3.9719 0.3294 0.0566 29 1 2.7466 3.4826 1.0338 30 1 3.9837 5.6040 0.8731 31 1 6.1079 5.7061 -0.3626 32 1 7.0137 3.6848 -1.4342 33 1 7.9475 -0.1277 -3.5331 34 1 9.4466 0.6585 -2.9828 35 1 8.5315 -0.3888 -1.8720 36 1 10.4835 3.1415 -4.0891 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000109029084.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:14:48 Heat of formation + Delta-G solvation = -23.972476 kcal Electronic energy + Delta-G solvation = -19392.932083 eV Core-core repulsion = 16388.456604 eV Total energy + Delta-G solvation = -3004.475479 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 280.099 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -41.60797 -39.52950 -36.26916 -35.70202 -35.64099 -32.43569 -31.78149 -30.60069 -27.43224 -27.28316 -24.11964 -23.81748 -22.82805 -21.78761 -19.68624 -18.83432 -18.51035 -17.82709 -17.00785 -16.72098 -16.30732 -15.97668 -15.64034 -15.35702 -15.04563 -14.90279 -14.60625 -14.19441 -13.75047 -13.45375 -13.39687 -13.02962 -12.91816 -12.84009 -12.58060 -12.35239 -12.27588 -11.83062 -11.49039 -11.29768 -11.09629 -10.87493 -10.52687 -10.42828 -10.19553 -9.20875 -8.30490 -7.97758 -6.33884 0.31937 0.49122 0.94603 1.37366 1.41706 1.51723 1.61994 1.87589 2.03968 2.39376 2.88670 3.08674 3.22638 4.06319 4.23278 4.40656 4.49478 4.61347 4.62075 4.67089 4.67981 4.84672 4.89960 4.96445 5.06742 5.29104 5.35145 5.36703 5.43620 5.58601 5.61832 5.68307 5.78336 5.91645 6.04806 6.12622 6.68232 6.91695 7.32504 7.43106 8.83852 Molecular weight = 280.10amu Principal moments of inertia in cm(-1) A = 0.020827 B = 0.005179 C = 0.004735 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1344.075579 B = 5405.282665 C = 5911.606077 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.104 3.896 2 N -0.732 5.732 3 C 0.698 3.302 4 O -0.613 6.613 5 N -0.672 5.672 6 C 0.159 3.841 7 C -0.121 4.121 8 C -0.110 4.110 9 C -0.126 4.126 10 C -0.121 4.121 11 C -0.105 4.105 12 S -0.170 6.170 13 C 0.089 3.911 14 H 0.029 0.971 15 C -0.114 4.114 16 C -0.523 4.523 17 H 0.051 0.949 18 C 0.033 3.967 19 N -0.906 5.906 20 Si 0.949 3.051 21 H -0.276 1.276 22 H -0.276 1.276 23 H -0.277 1.277 24 H 0.054 0.946 25 H 0.045 0.955 26 H 0.117 0.883 27 H 0.415 0.585 28 H 0.416 0.584 29 H 0.139 0.861 30 H 0.154 0.846 31 H 0.141 0.859 32 H 0.129 0.871 33 H 0.036 0.964 34 H 0.078 0.922 35 H 0.042 0.958 36 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.091 -4.850 8.553 15.584 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.040 4.040 2 N -0.388 5.388 3 C 0.398 3.602 4 O -0.493 6.493 5 N -0.320 5.320 6 C 0.058 3.942 7 C -0.142 4.142 8 C -0.131 4.131 9 C -0.146 4.146 10 C -0.145 4.145 11 C -0.221 4.221 12 S 0.076 5.924 13 C -0.039 4.039 14 H 0.047 0.953 15 C -0.174 4.174 16 C -0.562 4.562 17 H 0.069 0.931 18 C -0.169 4.169 19 N -0.545 5.545 20 Si 0.775 3.225 21 H -0.201 1.201 22 H -0.202 1.202 23 H -0.203 1.203 24 H 0.072 0.928 25 H 0.064 0.936 26 H 0.135 0.865 27 H 0.251 0.749 28 H 0.253 0.747 29 H 0.157 0.843 30 H 0.171 0.829 31 H 0.159 0.841 32 H 0.147 0.853 33 H 0.055 0.945 34 H 0.096 0.904 35 H 0.061 0.939 36 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -12.946 -5.168 8.358 16.253 hybrid contribution 1.261 1.102 -0.882 1.893 sum -11.686 -4.066 7.476 14.456 Atomic orbital electron populations 1.21610 0.76449 1.04425 1.01497 1.44872 1.08667 1.06395 1.78888 1.16131 0.81167 0.85216 0.77682 1.90876 1.68221 1.31569 1.58679 1.42455 1.04898 1.08475 1.76178 1.17093 0.91519 0.87093 0.98523 1.21233 1.00745 0.91934 1.00327 1.21318 0.94430 0.98056 0.99324 1.21311 0.96918 0.98158 0.98255 1.21577 1.01092 0.92115 0.99691 1.21563 0.99246 0.98608 1.02637 1.84094 1.26059 1.14760 1.67509 1.20920 0.88027 0.97251 0.97676 0.95326 1.21486 1.01652 0.95354 0.98908 1.21315 0.92719 1.26801 1.15356 0.93104 1.25546 0.94787 0.97572 0.99024 1.69956 0.98373 1.44257 1.41890 0.85626 0.78076 0.79095 0.79701 1.20097 1.20169 1.20258 0.92753 0.93583 0.86500 0.74865 0.74660 0.84305 0.82857 0.84136 0.85297 0.94518 0.90371 0.93907 0.92387 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 1.58 10.70 127.77 1.37 2.95 16 2 N -0.73 -14.31 5.72 -500.18 -2.86 -17.17 16 3 C 0.70 20.67 8.41 179.06 1.51 22.17 16 4 O -0.61 -22.55 13.76 -4.02 -0.06 -22.60 16 5 N -0.67 -20.42 5.03 -316.67 -1.59 -22.01 16 6 C 0.16 5.81 6.32 38.20 0.24 6.05 16 7 C -0.12 -4.15 8.70 22.37 0.19 -3.95 16 8 C -0.11 -3.43 10.04 22.29 0.22 -3.21 16 9 C -0.13 -4.35 10.04 22.28 0.22 -4.13 16 10 C -0.12 -5.03 8.85 22.39 0.20 -4.84 16 11 C -0.11 -4.29 6.11 22.70 0.14 -4.15 16 12 S -0.17 -7.01 20.11 -56.49 -1.14 -8.15 16 13 C 0.09 4.31 2.02 29.85 0.06 4.37 16 14 H 0.03 1.50 7.34 -2.39 -0.02 1.49 16 15 C -0.11 -5.22 8.90 71.98 0.64 -4.58 16 16 C -0.52 -27.46 6.47 25.60 0.17 -27.29 16 17 H 0.05 2.81 7.71 -2.91 -0.02 2.78 16 18 C 0.03 1.71 5.30 84.66 0.45 2.16 16 19 N -0.91 -48.70 11.38 21.45 0.24 -48.45 16 20 Si 0.95 42.46 29.54 68.60 2.03 44.49 16 21 H -0.28 -12.53 7.11 99.48 0.71 -11.82 16 22 H -0.28 -12.04 7.11 99.48 0.71 -11.33 16 23 H -0.28 -12.10 7.11 99.48 0.71 -11.40 16 24 H 0.05 0.89 8.14 -2.39 -0.02 0.87 16 25 H 0.05 0.84 8.14 -2.39 -0.02 0.82 16 26 H 0.12 0.81 8.14 -2.39 -0.02 0.79 16 27 H 0.42 5.45 8.85 -92.70 -0.82 4.63 16 28 H 0.42 10.81 7.99 -92.71 -0.74 10.07 16 29 H 0.14 4.74 6.19 -2.91 -0.02 4.72 16 30 H 0.15 3.64 8.06 -2.91 -0.02 3.62 16 31 H 0.14 4.13 8.06 -2.91 -0.02 4.11 16 32 H 0.13 6.11 4.82 -2.91 -0.01 6.10 16 33 H 0.04 1.64 8.14 -2.39 -0.02 1.62 16 34 H 0.08 3.89 6.22 -2.39 -0.01 3.88 16 35 H 0.04 1.71 8.14 -2.38 -0.02 1.69 16 36 H 0.27 13.62 8.31 -92.70 -0.77 12.85 16 Total: -1.00 -64.46 312.96 1.59 -62.87 By element: Atomic # 1 Polarization: 25.91 SS G_CDS: -0.44 Total: 25.47 kcal Atomic # 6 Polarization: -19.85 SS G_CDS: 5.41 Total: -14.44 kcal Atomic # 7 Polarization: -83.42 SS G_CDS: -4.21 Total: -87.63 kcal Atomic # 8 Polarization: -22.55 SS G_CDS: -0.06 Total: -22.60 kcal Atomic # 14 Polarization: 42.46 SS G_CDS: 2.03 Total: 44.49 kcal Atomic # 16 Polarization: -7.01 SS G_CDS: -1.14 Total: -8.15 kcal Total: -64.46 1.59 -62.87 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000109029084.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.896 kcal (2) G-P(sol) polarization free energy of solvation -64.464 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.567 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.595 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.869 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.972 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds