Wall clock time and date at job start Fri Apr 10 2020 17:15:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81403 * 1 3 3 C 1.76203 * 102.99684 * 2 1 4 4 C 1.39045 * 120.04642 * 359.95619 * 3 2 1 5 5 C 1.38105 * 120.06081 * 179.97438 * 4 3 2 6 6 C 1.38203 * 120.15008 * 0.05212 * 5 4 3 7 7 C 1.38923 * 120.08854 * 359.96983 * 6 5 4 8 8 N 1.39922 * 120.03165 * 180.02562 * 7 6 5 9 9 C 1.34778 * 120.00049 * 324.81416 * 8 7 6 10 10 O 1.21284 * 120.00030 * 4.32474 * 9 8 7 11 11 C 1.50704 * 119.99920 * 184.32692 * 9 8 7 12 12 N 1.46502 * 109.46641 * 179.97438 * 11 9 8 13 13 C 1.46497 * 119.99861 * 90.00306 * 12 11 9 14 14 C 1.36940 * 120.00160 * 269.99733 * 12 11 9 15 15 H 1.07996 * 119.99351 * 24.89173 * 14 12 11 16 16 C 1.38810 * 119.99910 * 204.89499 * 14 12 11 17 17 N 1.31623 * 120.00180 * 5.59904 * 16 14 12 18 18 Si 1.86800 * 119.99941 * 185.59750 * 16 14 12 19 19 H 1.48504 * 109.46875 * 359.97438 * 18 16 14 20 20 H 1.48494 * 109.47265 * 119.99916 * 18 16 14 21 21 H 1.48501 * 109.47193 * 240.00259 * 18 16 14 22 22 C 1.38742 * 119.93962 * 0.02562 * 7 6 5 23 23 H 1.09007 * 109.47174 * 180.02562 * 1 2 3 24 24 H 1.08995 * 109.47023 * 299.99791 * 1 2 3 25 25 H 1.09001 * 109.47319 * 60.00097 * 1 2 3 26 26 H 1.07995 * 119.96969 * 0.04569 * 4 3 2 27 27 H 1.07996 * 119.93030 * 180.02562 * 5 4 3 28 28 H 1.07998 * 119.95493 * 179.97438 * 6 5 4 29 29 H 0.97004 * 120.00337 * 144.80630 * 8 7 6 30 30 H 1.08999 * 109.46841 * 299.99362 * 11 9 8 31 31 H 1.08996 * 109.47141 * 59.99815 * 11 9 8 32 32 H 1.09006 * 109.47607 * 95.01527 * 13 12 11 33 33 H 1.09004 * 109.47458 * 215.01216 * 13 12 11 34 34 H 1.09006 * 109.47282 * 335.01366 * 13 12 11 35 35 H 0.96997 * 119.99792 * 179.97438 * 17 16 14 36 36 H 1.08007 * 120.07333 * 179.72520 * 22 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2103 1.7169 0.0000 4 6 1.1941 2.6659 -0.0009 5 6 1.5044 4.0117 -0.0004 6 6 2.8248 4.4196 0.0000 7 6 3.8451 3.4767 0.0004 8 7 5.1815 3.8911 0.0013 9 6 5.5432 5.0019 -0.6708 10 8 4.6994 5.6856 -1.2109 11 6 6.9959 5.3944 -0.7514 12 7 7.1258 6.6281 -1.5308 13 6 7.0649 7.9286 -0.8591 14 6 7.3043 6.5656 -2.8870 15 1 6.9614 5.7020 -3.4374 16 6 7.9259 7.6122 -3.5542 17 7 8.4419 8.6131 -2.8728 18 14 8.0301 7.6001 -5.4193 19 1 7.3794 6.3724 -5.9434 20 1 7.3389 8.7973 -5.9615 21 1 9.4554 7.6204 -5.8356 22 6 3.5376 2.1238 0.0000 23 1 -0.3634 -1.0277 0.0005 24 1 -0.3633 0.5138 0.8900 25 1 -0.3634 0.5138 -0.8900 26 1 0.1613 2.3504 -0.0009 27 1 0.7134 4.7470 -0.0007 28 1 3.0639 5.4728 0.0000 29 1 5.8478 3.3789 0.4858 30 1 7.3847 5.5568 0.2539 31 1 7.5612 4.5981 -1.2354 32 1 8.0758 8.2707 -0.6371 33 1 6.5718 8.6509 -1.5098 34 1 6.5019 7.8322 0.0692 35 1 8.8765 9.3442 -3.3390 36 1 4.3291 1.3889 -0.0041 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000120783647.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:15:00 Heat of formation + Delta-G solvation = 2.986841 kcal Electronic energy + Delta-G solvation = -19008.758635 eV Core-core repulsion = 16005.452200 eV Total energy + Delta-G solvation = -3003.306435 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 280.099 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -41.39772 -39.43271 -37.13002 -35.68302 -33.37304 -32.00523 -31.35512 -29.71249 -28.50532 -27.87701 -24.50850 -23.90793 -22.89530 -21.37249 -19.22011 -18.77991 -18.12654 -17.35007 -17.09386 -16.59039 -16.39155 -15.76617 -15.40119 -15.24600 -15.00122 -14.77207 -14.66907 -14.45452 -13.82952 -13.74826 -13.40036 -13.14793 -12.83015 -12.76806 -12.63200 -12.61424 -12.30620 -12.07554 -11.89999 -11.54084 -11.19235 -10.94213 -10.64621 -10.47984 -9.25793 -8.82850 -8.36069 -7.87103 -5.38508 0.18025 0.27746 0.55233 1.43238 1.45413 1.48221 1.55666 1.75248 2.14768 2.49684 2.72820 3.28970 3.65382 3.85688 4.04560 4.10091 4.24341 4.29373 4.31009 4.48166 4.56867 4.61061 4.67058 4.76193 4.80232 4.87840 5.13284 5.30902 5.34507 5.38574 5.50785 5.58721 5.68832 5.97960 6.26384 6.56237 7.10009 7.33423 7.78308 8.20353 9.16311 Molecular weight = 280.10amu Principal moments of inertia in cm(-1) A = 0.030037 B = 0.003468 C = 0.003357 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 931.949060 B = 8072.587896 C = 8338.189820 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 S -0.138 6.138 3 C -0.074 4.074 4 C -0.153 4.153 5 C -0.086 4.086 6 C -0.152 4.152 7 C 0.158 3.842 8 N -0.668 5.668 9 C 0.480 3.520 10 O -0.552 6.552 11 C 0.134 3.866 12 N -0.596 5.596 13 C 0.182 3.818 14 C -0.261 4.261 15 H 0.060 0.940 16 C -0.048 4.048 17 N -0.935 5.935 18 Si 0.971 3.029 19 H -0.272 1.272 20 H -0.293 1.293 21 H -0.282 1.282 22 C -0.136 4.136 23 H 0.127 0.873 24 H 0.095 0.905 25 H 0.090 0.910 26 H 0.150 0.850 27 H 0.145 0.855 28 H 0.113 0.887 29 H 0.426 0.574 30 H 0.108 0.892 31 H 0.100 0.900 32 H 0.020 0.980 33 H 0.010 0.990 34 H 0.020 0.980 35 H 0.250 0.750 36 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.722 -17.618 10.085 24.503 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.306 4.306 2 S 0.103 5.897 3 C -0.187 4.187 4 C -0.177 4.177 5 C -0.106 4.106 6 C -0.175 4.175 7 C 0.061 3.939 8 N -0.316 5.316 9 C 0.266 3.734 10 O -0.427 6.427 11 C 0.003 3.997 12 N -0.317 5.317 13 C 0.037 3.963 14 C -0.391 4.391 15 H 0.078 0.922 16 C -0.243 4.243 17 N -0.582 5.582 18 Si 0.799 3.201 19 H -0.197 1.197 20 H -0.220 1.220 21 H -0.208 1.208 22 C -0.162 4.162 23 H 0.145 0.855 24 H 0.114 0.886 25 H 0.109 0.891 26 H 0.168 0.832 27 H 0.162 0.838 28 H 0.131 0.869 29 H 0.265 0.735 30 H 0.125 0.875 31 H 0.118 0.882 32 H 0.038 0.962 33 H 0.029 0.971 34 H 0.038 0.962 35 H 0.060 0.940 36 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges -13.490 -17.977 9.604 24.441 hybrid contribution -0.374 1.499 -0.876 1.776 sum -13.864 -16.478 8.728 23.236 Atomic orbital electron populations 1.23802 0.91563 1.08596 1.06629 1.85493 1.10001 1.01569 1.92611 1.21651 0.95873 0.97691 1.03510 1.21369 0.99263 0.92442 1.04594 1.21179 0.95677 0.96339 0.97424 1.21358 0.93240 0.99725 1.03153 1.17885 0.84813 0.92622 0.98597 1.43776 1.07586 1.28213 1.52048 1.23567 0.94704 0.79140 0.75951 1.90628 1.53782 1.52518 1.45794 1.20969 0.89319 0.90681 0.98761 1.43772 1.82812 1.00903 1.04181 1.20570 0.97270 0.86115 0.92328 1.19404 1.30895 1.04789 0.84030 0.92186 1.25809 0.98334 0.97677 1.02483 1.70208 1.41676 1.11288 1.34982 0.85153 0.77326 0.77352 0.80278 1.19692 1.21957 1.20783 1.20593 0.95960 0.93653 1.05987 0.85453 0.88571 0.89058 0.83203 0.83759 0.86869 0.73504 0.87467 0.88211 0.96153 0.97135 0.96158 0.94041 0.83865 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.36 9.15 113.37 1.04 -0.33 16 2 S -0.14 -2.49 22.56 -56.49 -1.27 -3.77 16 3 C -0.07 -1.71 6.11 22.60 0.14 -1.57 16 4 C -0.15 -3.29 9.36 22.43 0.21 -3.08 16 5 C -0.09 -2.18 10.03 22.23 0.22 -1.96 16 6 C -0.15 -4.87 8.69 22.43 0.19 -4.67 16 7 C 0.16 4.69 6.29 38.13 0.24 4.93 16 8 N -0.67 -19.06 5.33 -303.56 -1.62 -20.68 16 9 C 0.48 18.32 7.74 87.66 0.68 19.00 16 10 O -0.55 -26.67 13.88 -3.04 -0.04 -26.72 16 11 C 0.13 5.10 6.13 85.63 0.52 5.63 16 12 N -0.60 -30.71 2.41 -731.29 -1.76 -32.48 16 13 C 0.18 9.42 8.95 127.77 1.14 10.57 16 14 C -0.26 -14.92 9.66 84.03 0.81 -14.11 16 15 H 0.06 3.43 7.83 -2.91 -0.02 3.41 16 16 C -0.05 -2.77 5.24 84.86 0.44 -2.32 16 17 N -0.94 -56.02 10.45 21.65 0.23 -55.80 16 18 Si 0.97 46.67 29.56 68.60 2.03 48.70 16 19 H -0.27 -12.68 7.11 99.48 0.71 -11.97 16 20 H -0.29 -14.14 7.11 99.48 0.71 -13.44 16 21 H -0.28 -13.09 7.11 99.48 0.71 -12.39 16 22 C -0.14 -3.43 9.71 22.53 0.22 -3.21 16 23 H 0.13 0.77 8.14 -2.39 -0.02 0.75 16 24 H 0.10 0.78 7.75 -2.39 -0.02 0.76 16 25 H 0.09 0.84 7.75 -2.39 -0.02 0.82 16 26 H 0.15 2.26 5.87 -2.91 -0.02 2.24 16 27 H 0.14 2.97 8.06 -2.91 -0.02 2.95 16 28 H 0.11 4.28 6.23 -2.91 -0.02 4.26 16 29 H 0.43 8.46 8.82 -92.70 -0.82 7.64 16 30 H 0.11 3.32 8.07 -2.39 -0.02 3.30 16 31 H 0.10 3.46 8.04 -2.39 -0.02 3.44 16 32 H 0.02 1.09 7.35 -2.38 -0.02 1.08 16 33 H 0.01 0.58 7.26 -2.38 -0.02 0.56 16 34 H 0.02 0.91 8.03 -2.38 -0.02 0.89 16 35 H 0.25 14.46 8.31 -92.71 -0.77 13.69 16 36 H 0.14 3.07 8.06 -2.91 -0.02 3.04 16 Total: -1.00 -74.53 318.15 3.70 -70.83 By element: Atomic # 1 Polarization: 10.75 SS G_CDS: 0.28 Total: 11.03 kcal Atomic # 6 Polarization: 3.01 SS G_CDS: 5.87 Total: 8.88 kcal Atomic # 7 Polarization: -105.80 SS G_CDS: -3.16 Total: -108.96 kcal Atomic # 8 Polarization: -26.67 SS G_CDS: -0.04 Total: -26.72 kcal Atomic # 14 Polarization: 46.67 SS G_CDS: 2.03 Total: 48.70 kcal Atomic # 16 Polarization: -2.49 SS G_CDS: -1.27 Total: -3.77 kcal Total: -74.53 3.70 -70.83 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000120783647.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.818 kcal (2) G-P(sol) polarization free energy of solvation -74.528 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.710 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.697 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.831 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.987 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds