Wall clock time and date at job start Fri Apr 10 2020 17:15:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09000 * 109.47148 * 2 1 4 4 C 1.50698 * 109.47185 * 120.00324 * 2 1 3 5 5 H 1.07997 * 120.00143 * 94.91423 * 4 2 1 6 6 C 1.37883 * 119.99775 * 274.91411 * 4 2 1 7 7 N 1.31513 * 119.99748 * 174.95990 * 6 4 2 8 8 Si 1.86793 * 119.99896 * 354.95893 * 6 4 2 9 9 H 1.48498 * 109.47084 * 275.02197 * 8 6 4 10 10 H 1.48496 * 109.47271 * 35.02498 * 8 6 4 11 11 H 1.48509 * 109.46919 * 155.02477 * 8 6 4 12 12 N 1.46502 * 109.47055 * 240.00105 * 2 1 3 13 13 C 1.34780 * 119.99871 * 84.99905 * 12 2 1 14 14 O 1.21353 * 119.99922 * 359.97438 * 13 12 2 15 15 C 1.49338 * 119.99855 * 180.02562 * 13 12 2 16 16 O 1.21386 * 120.00168 * 359.97438 * 15 13 12 17 17 N 1.34773 * 120.00109 * 180.02562 * 15 13 12 18 18 C 1.39814 * 120.00483 * 185.34047 * 17 15 13 19 19 C 1.38911 * 120.05426 * 214.50463 * 18 17 15 20 20 C 1.38088 * 119.94964 * 179.81269 * 19 18 17 21 21 C 1.38496 * 120.05017 * 0.44188 * 20 19 18 22 22 F 1.35103 * 119.95063 * 179.76857 * 21 20 19 23 23 C 1.38491 * 120.09941 * 359.78867 * 21 20 19 24 24 C 1.38086 * 120.05036 * 0.02562 * 23 21 20 25 25 H 1.09001 * 109.47520 * 174.99333 * 1 2 3 26 26 H 1.09000 * 109.47281 * 294.98883 * 1 2 3 27 27 H 1.08997 * 109.47258 * 54.99326 * 1 2 3 28 28 H 0.96995 * 120.00331 * 180.02562 * 7 6 4 29 29 H 0.96999 * 119.99831 * 265.00136 * 12 2 1 30 30 H 0.97004 * 120.00001 * 5.34441 * 17 15 13 31 31 H 1.08000 * 120.02246 * 0.02562 * 19 18 17 32 32 H 1.07998 * 119.97666 * 180.19057 * 20 19 18 33 33 H 1.08003 * 119.97233 * 179.97438 * 23 21 20 34 34 H 1.08003 * 120.02526 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7105 1.2304 5 1 2.2879 -1.7587 1.1822 6 6 2.1657 -0.0222 2.4177 7 7 2.5086 -0.6626 3.5140 8 14 1.8593 1.8197 2.4690 9 1 3.0981 2.5387 2.0772 10 1 0.7663 2.1662 1.5253 11 1 1.4697 2.2186 3.8455 12 7 2.0183 -0.6906 -1.1962 13 6 2.1470 -0.0182 -2.3572 14 8 1.8579 1.1591 -2.4117 15 6 2.6442 -0.7223 -3.5767 16 8 2.9329 -1.9001 -3.5222 17 7 2.7734 -0.0498 -4.7375 18 6 3.1313 -0.7317 -5.9044 19 6 3.9306 -0.1106 -6.8558 20 6 4.2859 -0.7874 -8.0057 21 6 3.8387 -2.0813 -8.2152 22 9 4.1838 -2.7400 -9.3432 23 6 3.0378 -2.7009 -7.2703 24 6 2.6831 -2.0293 -6.1171 25 1 -0.3634 -1.0237 -0.0897 26 1 -0.3634 0.4341 0.9315 27 1 -0.3633 0.5895 -0.8417 28 1 2.6021 -0.1786 4.3493 29 1 2.2490 -1.6318 -1.1526 30 1 2.6181 0.9073 -4.7634 31 1 4.2765 0.8997 -6.6945 32 1 4.9098 -0.3060 -8.7442 33 1 2.6898 -3.7098 -7.4359 34 1 2.0582 -2.5126 -5.3807 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000122789902.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:15:04 Heat of formation + Delta-G solvation = -87.230935 kcal Electronic energy + Delta-G solvation = -20747.752894 eV Core-core repulsion = 17174.321147 eV Total energy + Delta-G solvation = -3573.431748 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 280.101 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -49.07673 -40.96148 -39.23205 -37.96826 -35.53286 -34.64457 -32.46414 -31.44856 -30.10845 -29.46452 -25.46603 -25.00004 -23.55499 -22.40691 -20.80283 -19.85220 -18.94863 -17.96258 -17.52585 -16.93412 -16.40134 -15.87403 -15.77613 -15.62664 -15.19163 -14.63682 -14.25473 -13.93502 -13.78854 -13.40467 -13.38227 -13.07460 -12.73074 -12.66198 -12.44151 -11.70373 -11.58423 -11.35593 -11.25274 -10.94156 -10.56264 -10.48936 -9.96006 -9.45754 -9.35724 -9.27602 -8.80585 -8.44231 -8.31912 -6.30241 -4.34921 0.71635 0.94448 1.66769 2.45222 3.19477 3.25358 3.28084 3.32640 3.53362 3.86872 4.03476 4.24556 4.45160 4.56288 4.81339 4.92177 5.04285 5.08778 5.25304 5.59738 5.82287 5.91758 5.93802 6.10782 6.17230 6.37278 6.51136 6.61593 6.72211 6.84656 7.03007 7.15913 7.32213 7.62599 7.94992 8.33638 8.45851 8.71339 9.28795 10.81380 Molecular weight = 280.10amu Principal moments of inertia in cm(-1) A = 0.042758 B = 0.003276 C = 0.003191 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 654.697314 B = 8544.578441 C = 8773.131243 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.233 3.767 3 H 0.052 0.948 4 C -0.537 4.537 5 H 0.082 0.918 6 C 0.083 3.917 7 N -0.885 5.885 8 Si 0.871 3.129 9 H -0.272 1.272 10 H -0.257 1.257 11 H -0.284 1.284 12 N -0.661 5.661 13 C 0.496 3.504 14 O -0.538 6.538 15 C 0.509 3.491 16 O -0.500 6.500 17 N -0.652 5.652 18 C 0.141 3.859 19 C -0.115 4.115 20 C -0.133 4.133 21 C 0.079 3.921 22 F -0.142 7.142 23 C -0.131 4.131 24 C -0.092 4.092 25 H 0.049 0.951 26 H 0.060 0.940 27 H 0.031 0.969 28 H 0.269 0.731 29 H 0.408 0.592 30 H 0.424 0.576 31 H 0.139 0.861 32 H 0.140 0.860 33 H 0.140 0.860 34 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.749 0.591 -20.739 20.761 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C 0.131 3.869 3 H 0.070 0.930 4 C -0.575 4.575 5 H 0.100 0.900 6 C -0.122 4.122 7 N -0.521 5.521 8 Si 0.698 3.302 9 H -0.198 1.198 10 H -0.181 1.181 11 H -0.210 1.210 12 N -0.310 5.310 13 C 0.274 3.726 14 O -0.417 6.417 15 C 0.292 3.708 16 O -0.372 6.372 17 N -0.299 5.299 18 C 0.047 3.953 19 C -0.135 4.135 20 C -0.152 4.152 21 C 0.059 3.941 22 F -0.120 7.120 23 C -0.151 4.151 24 C -0.112 4.112 25 H 0.068 0.932 26 H 0.079 0.921 27 H 0.050 0.950 28 H 0.079 0.921 29 H 0.244 0.756 30 H 0.263 0.737 31 H 0.157 0.843 32 H 0.157 0.843 33 H 0.158 0.842 34 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges 0.755 0.571 -20.426 20.448 hybrid contribution 0.065 0.818 0.007 0.820 sum 0.820 1.389 -20.419 20.482 Atomic orbital electron populations 1.22317 0.97995 1.00546 1.00230 1.19285 0.91274 0.94335 0.82031 0.92998 1.20966 1.46202 0.98602 0.91756 0.89976 1.24871 0.93652 0.98494 0.95205 1.69869 1.46010 1.36504 0.99713 0.86966 0.79927 0.85563 0.77787 1.19779 1.18130 1.20987 1.46452 1.61100 1.14862 1.08592 1.19710 0.81027 0.87283 0.84556 1.90726 1.51008 1.15219 1.84710 1.20899 0.77952 0.87282 0.84689 1.90771 1.46017 1.15615 1.84831 1.43251 1.67420 1.13253 1.06010 1.17794 0.97033 0.93420 0.87078 1.20799 0.97591 1.01244 0.93865 1.20916 1.02077 0.93372 0.98864 1.17703 1.00374 0.91639 0.84383 1.91494 1.90770 1.80778 1.48993 1.21040 0.99306 1.01212 0.93500 1.21057 0.99496 0.93774 0.96921 0.93178 0.92096 0.95038 0.92074 0.75646 0.73716 0.84327 0.84264 0.84240 0.83725 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.17 9.10 37.16 0.34 -2.83 16 2 C 0.23 5.29 2.12 -69.08 -0.15 5.15 16 3 H 0.05 1.26 5.35 -51.93 -0.28 0.98 16 4 C -0.54 -14.08 9.06 -34.44 -0.31 -14.39 16 5 H 0.08 2.29 8.02 -52.49 -0.42 1.87 16 6 C 0.08 2.25 5.47 -17.82 -0.10 2.15 16 7 N -0.89 -25.53 13.96 55.43 0.77 -24.76 16 8 Si 0.87 20.49 26.19 -169.99 -4.45 16.04 16 9 H -0.27 -6.41 7.11 56.52 0.40 -6.01 16 10 H -0.26 -5.80 6.14 56.52 0.35 -5.46 16 11 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 12 N -0.66 -13.06 5.06 -55.40 -0.28 -13.34 16 13 C 0.50 8.99 7.85 -11.64 -0.09 8.90 16 14 O -0.54 -10.63 16.15 5.49 0.09 -10.54 16 15 C 0.51 7.82 7.61 -11.64 -0.09 7.73 16 16 O -0.50 -8.38 14.27 5.47 0.08 -8.30 16 17 N -0.65 -7.92 5.32 -10.29 -0.05 -7.98 16 18 C 0.14 1.59 6.25 -83.72 -0.52 1.07 16 19 C -0.11 -1.03 9.96 -39.39 -0.39 -1.43 16 20 C -0.13 -1.17 10.02 -39.54 -0.40 -1.56 16 21 C 0.08 0.80 7.30 -39.39 -0.29 0.51 16 22 F -0.14 -1.50 17.27 2.25 0.04 -1.46 16 23 C -0.13 -1.33 10.02 -39.54 -0.40 -1.73 16 24 C -0.09 -1.07 8.65 -39.39 -0.34 -1.41 16 25 H 0.05 0.98 8.14 -51.93 -0.42 0.55 16 26 H 0.06 1.29 6.73 -51.93 -0.35 0.94 16 27 H 0.03 0.61 8.14 -51.93 -0.42 0.19 16 28 H 0.27 7.28 8.31 -40.82 -0.34 6.94 16 29 H 0.41 7.64 8.03 -40.82 -0.33 7.31 16 30 H 0.42 4.42 8.30 -40.82 -0.34 4.08 16 31 H 0.14 0.93 8.06 -52.49 -0.42 0.50 16 32 H 0.14 0.90 8.06 -52.49 -0.42 0.48 16 33 H 0.14 1.16 8.06 -52.48 -0.42 0.74 16 34 H 0.15 1.78 6.53 -52.48 -0.34 1.44 16 LS Contribution 303.69 15.07 4.58 4.58 Total: -1.00 -29.92 303.69 -5.33 -35.25 By element: Atomic # 1 Polarization: 11.72 SS G_CDS: -3.36 Total: 8.36 kcal Atomic # 6 Polarization: 4.89 SS G_CDS: -2.73 Total: 2.16 kcal Atomic # 7 Polarization: -46.51 SS G_CDS: 0.44 Total: -46.07 kcal Atomic # 8 Polarization: -19.01 SS G_CDS: 0.17 Total: -18.84 kcal Atomic # 9 Polarization: -1.50 SS G_CDS: 0.04 Total: -1.46 kcal Atomic # 14 Polarization: 20.49 SS G_CDS: -4.45 Total: 16.04 kcal Total LS contribution 4.58 Total: 4.58 kcal Total: -29.92 -5.33 -35.25 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000122789902.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -51.984 kcal (2) G-P(sol) polarization free energy of solvation -29.921 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.905 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.326 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.247 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.231 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds