Wall clock time and date at job start Fri Apr 10 2020 17:15:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09000 * 109.47148 * 2 1 4 4 C 1.50698 * 109.47185 * 120.00324 * 2 1 3 5 5 H 1.07997 * 120.00143 * 94.91423 * 4 2 1 6 6 C 1.37883 * 119.99775 * 274.91411 * 4 2 1 7 7 N 1.31513 * 119.99748 * 174.95990 * 6 4 2 8 8 Si 1.86793 * 119.99896 * 354.95893 * 6 4 2 9 9 H 1.48498 * 109.47084 * 275.02197 * 8 6 4 10 10 H 1.48496 * 109.47271 * 35.02498 * 8 6 4 11 11 H 1.48509 * 109.46919 * 155.02477 * 8 6 4 12 12 N 1.46502 * 109.47055 * 240.00105 * 2 1 3 13 13 C 1.34780 * 119.99871 * 84.99905 * 12 2 1 14 14 O 1.21353 * 119.99922 * 359.97438 * 13 12 2 15 15 C 1.49338 * 119.99855 * 180.02562 * 13 12 2 16 16 O 1.21386 * 120.00168 * 359.97438 * 15 13 12 17 17 N 1.34773 * 120.00109 * 180.02562 * 15 13 12 18 18 C 1.39814 * 120.00483 * 185.34047 * 17 15 13 19 19 C 1.38911 * 120.05426 * 214.50463 * 18 17 15 20 20 C 1.38088 * 119.94964 * 179.81269 * 19 18 17 21 21 C 1.38496 * 120.05017 * 0.44188 * 20 19 18 22 22 F 1.35103 * 119.95063 * 179.76857 * 21 20 19 23 23 C 1.38491 * 120.09941 * 359.78867 * 21 20 19 24 24 C 1.38086 * 120.05036 * 0.02562 * 23 21 20 25 25 H 1.09001 * 109.47520 * 174.99333 * 1 2 3 26 26 H 1.09000 * 109.47281 * 294.98883 * 1 2 3 27 27 H 1.08997 * 109.47258 * 54.99326 * 1 2 3 28 28 H 0.96995 * 120.00331 * 180.02562 * 7 6 4 29 29 H 0.96999 * 119.99831 * 265.00136 * 12 2 1 30 30 H 0.97004 * 120.00001 * 5.34441 * 17 15 13 31 31 H 1.08000 * 120.02246 * 0.02562 * 19 18 17 32 32 H 1.07998 * 119.97666 * 180.19057 * 20 19 18 33 33 H 1.08003 * 119.97233 * 179.97438 * 23 21 20 34 34 H 1.08003 * 120.02526 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7105 1.2304 5 1 2.2879 -1.7587 1.1822 6 6 2.1657 -0.0222 2.4177 7 7 2.5086 -0.6626 3.5140 8 14 1.8593 1.8197 2.4690 9 1 3.0981 2.5387 2.0772 10 1 0.7663 2.1662 1.5253 11 1 1.4697 2.2186 3.8455 12 7 2.0183 -0.6906 -1.1962 13 6 2.1470 -0.0182 -2.3572 14 8 1.8579 1.1591 -2.4117 15 6 2.6442 -0.7223 -3.5767 16 8 2.9329 -1.9001 -3.5222 17 7 2.7734 -0.0498 -4.7375 18 6 3.1313 -0.7317 -5.9044 19 6 3.9306 -0.1106 -6.8558 20 6 4.2859 -0.7874 -8.0057 21 6 3.8387 -2.0813 -8.2152 22 9 4.1838 -2.7400 -9.3432 23 6 3.0378 -2.7009 -7.2703 24 6 2.6831 -2.0293 -6.1171 25 1 -0.3634 -1.0237 -0.0897 26 1 -0.3634 0.4341 0.9315 27 1 -0.3633 0.5895 -0.8417 28 1 2.6021 -0.1786 4.3493 29 1 2.2490 -1.6318 -1.1526 30 1 2.6181 0.9073 -4.7634 31 1 4.2765 0.8997 -6.6945 32 1 4.9098 -0.3060 -8.7442 33 1 2.6898 -3.7098 -7.4359 34 1 2.0582 -2.5126 -5.3807 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000122789902.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:15:03 Heat of formation + Delta-G solvation = -108.307193 kcal Electronic energy + Delta-G solvation = -20748.666830 eV Core-core repulsion = 17174.321147 eV Total energy + Delta-G solvation = -3574.345683 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 280.101 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -49.87864 -42.13588 -40.43791 -39.13821 -37.09285 -35.84882 -34.40370 -32.21165 -31.80054 -30.40974 -27.33862 -26.33771 -24.37455 -23.48917 -22.20789 -21.35758 -20.30142 -18.92012 -18.58138 -18.50310 -17.52588 -17.25716 -17.13661 -16.57089 -16.55615 -15.92022 -15.44985 -15.15299 -15.01273 -14.60039 -14.57304 -14.31426 -14.15795 -13.94848 -13.58881 -13.38742 -13.13391 -12.91737 -12.73612 -12.34036 -12.17172 -11.81923 -11.43875 -11.30876 -10.86838 -10.72204 -10.15134 -10.09277 -9.20405 -8.38624 -6.47175 -0.21798 0.19574 0.46523 1.22568 1.35369 1.37925 1.47554 2.05452 2.28561 2.57425 2.61301 2.99651 3.26722 3.40650 3.73291 3.85645 4.19026 4.25625 4.38969 4.40622 4.69313 4.74993 4.89963 5.00518 5.07972 5.11206 5.13072 5.18471 5.23981 5.42135 5.50050 5.77517 5.87838 6.08329 6.47985 6.56764 6.70135 6.94990 7.21125 8.76490 Molecular weight = 280.10amu Principal moments of inertia in cm(-1) A = 0.042758 B = 0.003276 C = 0.003191 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 654.697314 B = 8544.578441 C = 8773.131243 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.237 3.763 3 H 0.042 0.958 4 C -0.538 4.538 5 H 0.052 0.948 6 C 0.031 3.969 7 N -0.931 5.931 8 Si 0.928 3.072 9 H -0.271 1.271 10 H -0.240 1.240 11 H -0.279 1.279 12 N -0.669 5.669 13 C 0.500 3.500 14 O -0.551 6.551 15 C 0.518 3.482 16 O -0.518 6.518 17 N -0.633 5.633 18 C 0.119 3.881 19 C -0.102 4.102 20 C -0.126 4.126 21 C 0.072 3.928 22 F -0.145 7.145 23 C -0.136 4.136 24 C -0.106 4.106 25 H 0.057 0.943 26 H 0.056 0.944 27 H 0.045 0.955 28 H 0.272 0.728 29 H 0.411 0.589 30 H 0.434 0.566 31 H 0.168 0.832 32 H 0.168 0.832 33 H 0.152 0.848 34 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.851 2.167 -22.986 23.104 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C 0.134 3.866 3 H 0.060 0.940 4 C -0.576 4.576 5 H 0.070 0.930 6 C -0.169 4.169 7 N -0.569 5.569 8 Si 0.752 3.248 9 H -0.197 1.197 10 H -0.164 1.164 11 H -0.205 1.205 12 N -0.318 5.318 13 C 0.280 3.720 14 O -0.430 6.430 15 C 0.300 3.700 16 O -0.392 6.392 17 N -0.281 5.281 18 C 0.026 3.974 19 C -0.122 4.122 20 C -0.146 4.146 21 C 0.052 3.948 22 F -0.124 7.124 23 C -0.155 4.155 24 C -0.126 4.126 25 H 0.076 0.924 26 H 0.075 0.925 27 H 0.065 0.935 28 H 0.081 0.919 29 H 0.247 0.753 30 H 0.274 0.726 31 H 0.185 0.815 32 H 0.185 0.815 33 H 0.169 0.831 34 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges 0.853 2.159 -22.733 22.851 hybrid contribution 0.078 0.252 0.559 0.618 sum 0.931 2.411 -22.174 22.324 Atomic orbital electron populations 1.22217 0.96328 1.01390 1.00628 1.19046 0.92429 0.93347 0.81765 0.93992 1.21167 1.45480 0.97558 0.93372 0.92971 1.25644 0.93637 1.02835 0.94828 1.69989 1.48086 1.38378 1.00484 0.86052 0.80251 0.80229 0.78296 1.19677 1.16355 1.20464 1.46229 1.61928 1.15041 1.08634 1.20049 0.80116 0.87011 0.84873 1.90710 1.51353 1.15860 1.85122 1.20219 0.78343 0.86838 0.84635 1.90779 1.47272 1.16170 1.85011 1.43049 1.66169 1.13557 1.05300 1.17995 0.98584 0.93663 0.87193 1.21077 0.96081 1.02247 0.92818 1.21243 1.01500 0.92684 0.99124 1.17910 1.00394 0.92286 0.84186 1.91490 1.90780 1.80976 1.49123 1.21154 0.99335 1.01836 0.93156 1.21031 1.00079 0.94254 0.97286 0.92408 0.92492 0.93548 0.91912 0.75257 0.72600 0.81493 0.81473 0.83074 0.85092 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.92 9.10 71.98 0.66 -5.26 16 2 C 0.24 10.65 2.12 44.24 0.09 10.75 16 3 H 0.04 1.98 5.35 -2.39 -0.01 1.97 16 4 C -0.54 -28.58 9.06 25.60 0.23 -28.35 16 5 H 0.05 3.02 8.02 -2.91 -0.02 2.99 16 6 C 0.03 1.70 5.47 84.66 0.46 2.17 16 7 N -0.93 -54.85 13.96 21.45 0.30 -54.55 16 8 Si 0.93 41.91 26.19 68.60 1.80 43.71 16 9 H -0.27 -12.14 7.11 99.48 0.71 -11.43 16 10 H -0.24 -10.11 6.14 99.48 0.61 -9.50 16 11 H -0.28 -12.29 7.11 99.48 0.71 -11.58 16 12 N -0.67 -26.21 5.06 -447.55 -2.27 -28.47 16 13 C 0.50 17.60 7.85 87.23 0.68 18.29 16 14 O -0.55 -20.87 16.15 -3.26 -0.05 -20.93 16 15 C 0.52 15.36 7.61 87.23 0.66 16.02 16 16 O -0.52 -17.15 14.27 -3.36 -0.05 -17.20 16 17 N -0.63 -14.22 5.32 -304.80 -1.62 -15.84 16 18 C 0.12 2.45 6.25 38.19 0.24 2.69 16 19 C -0.10 -1.51 9.96 22.40 0.22 -1.29 16 20 C -0.13 -1.80 10.02 22.30 0.22 -1.57 16 21 C 0.07 1.30 7.30 22.39 0.16 1.46 16 22 F -0.14 -2.78 17.27 44.97 0.78 -2.01 16 23 C -0.14 -2.58 10.02 22.29 0.22 -2.36 16 24 C -0.11 -2.35 8.65 22.40 0.19 -2.16 16 25 H 0.06 2.20 8.14 -2.39 -0.02 2.18 16 26 H 0.06 2.31 6.73 -2.39 -0.02 2.30 16 27 H 0.05 1.71 8.14 -2.39 -0.02 1.69 16 28 H 0.27 14.96 8.31 -92.71 -0.77 14.19 16 29 H 0.41 15.57 8.03 -92.71 -0.74 14.83 16 30 H 0.43 8.00 8.30 -92.71 -0.77 7.23 16 31 H 0.17 1.50 8.06 -2.91 -0.02 1.47 16 32 H 0.17 1.44 8.06 -2.91 -0.02 1.42 16 33 H 0.15 2.38 8.06 -2.91 -0.02 2.36 16 34 H 0.13 3.23 6.53 -2.91 -0.02 3.21 16 Total: -1.00 -64.07 303.69 2.50 -61.57 By element: Atomic # 1 Polarization: 23.77 SS G_CDS: -0.44 Total: 23.33 kcal Atomic # 6 Polarization: 6.33 SS G_CDS: 4.06 Total: 10.39 kcal Atomic # 7 Polarization: -95.27 SS G_CDS: -3.59 Total: -98.86 kcal Atomic # 8 Polarization: -38.03 SS G_CDS: -0.10 Total: -38.13 kcal Atomic # 9 Polarization: -2.78 SS G_CDS: 0.78 Total: -2.01 kcal Atomic # 14 Polarization: 41.91 SS G_CDS: 1.80 Total: 43.71 kcal Total: -64.07 2.50 -61.57 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000122789902.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.735 kcal (2) G-P(sol) polarization free energy of solvation -64.075 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -110.809 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.502 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.572 kcal (6) G-S(sol) free energy of system = (1) + (5) -108.307 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds