Wall clock time and date at job start Fri Apr 10 2020 17:15:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09002 * 109.46857 * 2 1 4 4 C 1.50697 * 109.47523 * 239.99766 * 2 1 3 5 5 H 1.07997 * 119.99873 * 245.66920 * 4 2 1 6 6 C 1.37878 * 119.99669 * 65.67300 * 4 2 1 7 7 N 1.31518 * 119.99614 * 196.35323 * 6 4 2 8 8 Si 1.86792 * 120.00291 * 16.62536 * 6 4 2 9 9 H 1.48505 * 109.47245 * 179.72556 * 8 6 4 10 10 H 1.48502 * 109.47210 * 299.72695 * 8 6 4 11 11 H 1.48495 * 109.47339 * 59.72697 * 8 6 4 12 12 N 1.46507 * 109.47346 * 119.99655 * 2 1 3 13 13 C 1.34782 * 119.99907 * 275.00715 * 12 2 1 14 14 O 1.21358 * 119.99706 * 359.97438 * 13 12 2 15 15 C 1.49335 * 119.99650 * 179.97438 * 13 12 2 16 16 O 1.21380 * 120.00430 * 0.02562 * 15 13 12 17 17 N 1.34786 * 120.00050 * 179.97438 * 15 13 12 18 18 C 1.39817 * 120.00082 * 185.86573 * 17 15 13 19 19 C 1.38869 * 120.08778 * 19.49717 * 18 17 15 20 20 C 1.38119 * 119.95352 * 179.97438 * 19 18 17 21 21 C 1.38303 * 120.11778 * 0.02562 * 20 19 18 22 22 C 1.38278 * 120.16649 * 0.02562 * 21 20 19 23 23 C 1.38302 * 120.05250 * 359.69823 * 22 21 20 24 24 F 1.35093 * 120.06422 * 180.28068 * 23 22 21 25 25 H 1.09005 * 109.46952 * 186.37924 * 1 2 3 26 26 H 1.08999 * 109.47254 * 306.38022 * 1 2 3 27 27 H 1.08997 * 109.47236 * 66.38481 * 1 2 3 28 28 H 0.97003 * 120.00027 * 355.09821 * 7 6 4 29 29 H 0.96994 * 119.99571 * 95.00021 * 12 2 1 30 30 H 0.96998 * 119.99593 * 5.86885 * 17 15 13 31 31 H 1.08003 * 120.02468 * 359.95435 * 19 18 17 32 32 H 1.08003 * 119.94527 * 180.02562 * 20 19 18 33 33 H 1.07999 * 119.91834 * 179.97438 * 21 20 19 34 34 H 1.08000 * 119.97311 * 180.02562 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7104 -1.2304 5 1 2.5757 -1.6388 -1.1338 6 6 1.7985 -0.1751 -2.4793 7 7 1.9392 -0.9229 -3.5520 8 14 1.2891 1.6140 -2.6482 9 1 1.1067 1.9434 -4.0847 10 1 0.0120 1.8357 -1.9235 11 1 2.3436 2.4856 -2.0706 12 7 2.0184 -0.6906 1.1962 13 6 2.1470 -0.0181 2.3572 14 8 1.8586 1.1595 2.4115 15 6 2.6443 -0.7222 3.5767 16 8 2.9331 -1.8999 3.5223 17 7 2.7734 -0.0497 4.7376 18 6 3.3532 -0.6738 5.8463 19 6 4.1490 -1.7989 5.6748 20 6 4.7208 -2.4129 6.7720 21 6 4.5018 -1.9096 8.0414 22 6 3.7093 -0.7903 8.2180 23 6 3.1380 -0.1665 7.1238 24 9 2.3684 0.9304 7.2955 25 1 -0.3633 -1.0214 0.1142 26 1 -0.3634 0.6095 0.8274 27 1 -0.3633 0.4117 -0.9416 28 1 2.2757 -1.8290 -3.4709 29 1 2.2491 -1.6317 1.1527 30 1 2.4641 0.8672 4.8039 31 1 4.3204 -2.1936 4.6843 32 1 5.3400 -3.2876 6.6384 33 1 4.9501 -2.3925 8.8971 34 1 3.5408 -0.3996 9.2107 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000122934407.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:15:18 Heat of formation + Delta-G solvation = -82.440951 kcal Electronic energy + Delta-G solvation = -21047.242851 eV Core-core repulsion = 17474.018812 eV Total energy + Delta-G solvation = -3573.224039 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 280.101 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -49.14169 -41.01330 -39.20255 -38.05017 -35.65179 -34.82384 -32.53811 -30.89005 -30.12640 -29.75113 -25.39562 -24.78844 -23.40013 -22.43240 -20.75873 -19.83195 -19.09119 -18.00785 -17.49910 -17.23865 -16.44422 -16.16261 -15.84131 -15.59745 -15.12877 -14.89344 -14.22503 -14.12879 -13.74984 -13.36553 -13.25653 -12.81862 -12.71883 -12.29957 -12.20260 -12.00652 -11.89729 -11.56228 -11.19272 -10.86894 -10.57273 -10.12508 -9.85727 -9.34486 -9.18595 -9.08336 -8.51261 -8.41793 -8.35627 -6.66579 -4.31302 0.71185 0.94134 1.66937 2.36502 3.26708 3.32199 3.38977 3.51547 3.53539 3.80493 3.91330 4.34763 4.45070 4.64771 4.80525 4.95134 5.06163 5.09579 5.25462 5.64763 5.84584 5.88067 6.05798 6.19026 6.23645 6.39362 6.50967 6.65661 6.75378 6.81258 7.04386 7.18163 7.42622 7.60830 8.10478 8.19568 8.39551 8.70777 9.38369 10.74882 Molecular weight = 280.10amu Principal moments of inertia in cm(-1) A = 0.036352 B = 0.003693 C = 0.003453 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 770.067740 B = 7579.699635 C = 8107.080167 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.239 3.761 3 H 0.047 0.953 4 C -0.621 4.621 5 H 0.065 0.935 6 C 0.040 3.960 7 N -0.894 5.894 8 Si 1.042 2.958 9 H -0.282 1.282 10 H -0.270 1.270 11 H -0.279 1.279 12 N -0.659 5.659 13 C 0.496 3.504 14 O -0.533 6.533 15 C 0.511 3.489 16 O -0.498 6.498 17 N -0.644 5.644 18 C 0.123 3.877 19 C -0.116 4.116 20 C -0.105 4.105 21 C -0.115 4.115 22 C -0.132 4.132 23 C 0.064 3.936 24 F -0.137 7.137 25 H 0.048 0.952 26 H 0.031 0.969 27 H 0.068 0.932 28 H 0.270 0.730 29 H 0.407 0.593 30 H 0.427 0.573 31 H 0.165 0.835 32 H 0.134 0.866 33 H 0.133 0.867 34 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.799 -0.671 21.570 21.912 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.136 3.864 3 H 0.065 0.935 4 C -0.659 4.659 5 H 0.083 0.917 6 C -0.167 4.167 7 N -0.526 5.526 8 Si 0.869 3.131 9 H -0.207 1.207 10 H -0.196 1.196 11 H -0.205 1.205 12 N -0.308 5.308 13 C 0.274 3.726 14 O -0.412 6.412 15 C 0.295 3.705 16 O -0.372 6.372 17 N -0.289 5.289 18 C 0.027 3.973 19 C -0.136 4.136 20 C -0.124 4.124 21 C -0.134 4.134 22 C -0.151 4.151 23 C 0.042 3.958 24 F -0.116 7.116 25 H 0.067 0.933 26 H 0.050 0.950 27 H 0.087 0.913 28 H 0.081 0.919 29 H 0.242 0.758 30 H 0.265 0.735 31 H 0.182 0.818 32 H 0.152 0.848 33 H 0.151 0.849 34 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges 3.275 0.526 20.292 20.561 hybrid contribution 0.314 -1.031 1.272 1.668 sum 3.590 -0.506 21.564 21.866 Atomic orbital electron populations 1.22538 0.98181 1.00598 1.00877 1.19260 0.91066 0.94363 0.81673 0.93535 1.22062 1.42252 1.10822 0.90793 0.91698 1.25711 0.94316 1.05103 0.91557 1.70872 1.40255 1.10402 1.31104 0.84087 0.77609 0.74912 0.76472 1.20711 1.19629 1.20503 1.46254 1.61192 1.14697 1.08693 1.19642 0.81147 0.87290 0.84491 1.90739 1.50626 1.15141 1.84700 1.20893 0.78220 0.86813 0.84617 1.90650 1.46777 1.15141 1.84582 1.43131 1.58594 1.18066 1.09131 1.17915 0.97600 0.96673 0.85128 1.21705 0.95106 0.94531 1.02233 1.21193 0.99285 1.00021 0.91877 1.21033 0.98684 0.95869 0.97833 1.20971 0.99236 0.97190 0.97698 1.17397 0.97886 0.88058 0.92471 1.91493 1.73060 1.50958 1.96043 0.93330 0.94953 0.91325 0.91930 0.75756 0.73486 0.81797 0.84816 0.84931 0.84342 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.57 9.15 37.16 0.34 -3.23 16 2 C 0.24 5.59 2.14 -69.08 -0.15 5.45 16 3 H 0.05 1.15 6.24 -51.93 -0.32 0.83 16 4 C -0.62 -16.53 9.01 -34.44 -0.31 -16.84 16 5 H 0.06 1.82 7.96 -52.49 -0.42 1.40 16 6 C 0.04 1.11 5.31 -17.82 -0.09 1.01 16 7 N -0.89 -26.17 13.70 55.43 0.76 -25.41 16 8 Si 1.04 24.28 26.27 -169.99 -4.46 19.81 16 9 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 10 H -0.27 -5.83 5.72 56.52 0.32 -5.51 16 11 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 12 N -0.66 -13.46 5.06 -55.40 -0.28 -13.74 16 13 C 0.50 9.40 7.85 -11.64 -0.09 9.31 16 14 O -0.53 -11.05 16.15 5.49 0.09 -10.96 16 15 C 0.51 8.29 7.73 -11.64 -0.09 8.20 16 16 O -0.50 -8.40 13.37 5.47 0.07 -8.32 16 17 N -0.64 -9.01 5.33 -10.24 -0.05 -9.06 16 18 C 0.12 1.58 6.51 -83.65 -0.54 1.04 16 19 C -0.12 -1.40 8.79 -39.39 -0.35 -1.75 16 20 C -0.11 -0.97 10.04 -39.60 -0.40 -1.36 16 21 C -0.12 -0.92 10.04 -39.54 -0.40 -1.31 16 22 C -0.13 -1.18 10.02 -39.54 -0.40 -1.58 16 23 C 0.06 0.73 7.31 -39.23 -0.29 0.44 16 24 F -0.14 -1.64 16.75 2.25 0.04 -1.60 16 25 H 0.05 1.01 8.14 -51.93 -0.42 0.59 16 26 H 0.03 0.65 8.14 -51.93 -0.42 0.23 16 27 H 0.07 1.53 4.80 -51.93 -0.25 1.28 16 28 H 0.27 7.85 8.73 -40.82 -0.36 7.50 16 29 H 0.41 7.86 7.99 -40.82 -0.33 7.54 16 30 H 0.43 5.59 7.84 -40.82 -0.32 5.27 16 31 H 0.16 2.21 5.41 -52.48 -0.28 1.92 16 32 H 0.13 0.92 8.06 -52.48 -0.42 0.50 16 33 H 0.13 0.67 8.06 -52.49 -0.42 0.25 16 34 H 0.14 0.91 8.06 -52.49 -0.42 0.49 16 LS Contribution 299.88 15.07 4.52 4.52 Total: -1.00 -29.83 299.88 -5.35 -35.18 By element: Atomic # 1 Polarization: 13.47 SS G_CDS: -3.27 Total: 10.21 kcal Atomic # 6 Polarization: 2.15 SS G_CDS: -2.76 Total: -0.62 kcal Atomic # 7 Polarization: -48.64 SS G_CDS: 0.42 Total: -48.22 kcal Atomic # 8 Polarization: -19.44 SS G_CDS: 0.16 Total: -19.28 kcal Atomic # 9 Polarization: -1.64 SS G_CDS: 0.04 Total: -1.60 kcal Atomic # 14 Polarization: 24.28 SS G_CDS: -4.46 Total: 19.81 kcal Total LS contribution 4.52 Total: 4.52 kcal Total: -29.83 -5.35 -35.18 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000122934407.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.264 kcal (2) G-P(sol) polarization free energy of solvation -29.826 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.091 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.350 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.177 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.441 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds