Wall clock time and date at job start Fri Apr 10 2020 17:15:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81400 * 1 3 3 C 1.76195 * 103.00175 * 2 1 4 4 C 1.38776 * 120.10184 * 0.02562 * 3 2 1 5 5 C 1.38203 * 119.98925 * 180.02562 * 4 3 2 6 6 C 1.38295 * 120.19593 * 359.97438 * 5 4 3 7 7 C 1.38256 * 120.20562 * 0.02562 * 6 5 4 8 8 C 1.38635 * 120.00959 * 359.97438 * 7 6 5 9 9 N 1.40192 * 120.09919 * 180.02562 * 8 7 6 10 10 C 1.34777 * 119.99899 * 325.32778 * 9 8 7 11 11 O 1.21594 * 120.00175 * 4.47164 * 10 9 8 12 12 N 1.34778 * 119.99885 * 184.47971 * 10 9 8 13 13 C 1.46508 * 119.99954 * 179.97438 * 12 10 9 14 14 H 1.09000 * 109.46996 * 34.99857 * 13 12 10 15 15 C 1.52994 * 109.47072 * 274.99849 * 13 12 10 16 16 C 1.50701 * 109.46971 * 154.99615 * 13 12 10 17 17 H 1.07997 * 120.00350 * 0.02562 * 16 13 12 18 18 C 1.37875 * 119.99503 * 180.02562 * 16 13 12 19 19 N 1.31508 * 120.00440 * 359.97438 * 18 16 13 20 20 Si 1.86808 * 119.99762 * 180.02562 * 18 16 13 21 21 H 1.48498 * 109.46758 * 359.97438 * 20 18 16 22 22 H 1.48500 * 109.47137 * 119.99928 * 20 18 16 23 23 H 1.48500 * 109.46851 * 239.99720 * 20 18 16 24 24 H 1.08993 * 109.47319 * 59.99986 * 1 2 3 25 25 H 1.09001 * 109.47438 * 180.02562 * 1 2 3 26 26 H 1.09007 * 109.46833 * 299.99708 * 1 2 3 27 27 H 1.08002 * 120.00813 * 359.97438 * 4 3 2 28 28 H 1.08003 * 119.90500 * 180.02562 * 5 4 3 29 29 H 1.07996 * 119.89541 * 179.74447 * 6 5 4 30 30 H 1.08000 * 119.99794 * 179.97438 * 7 6 5 31 31 H 0.97004 * 120.00380 * 145.31835 * 9 8 7 32 32 H 0.96994 * 120.00254 * 359.97438 * 12 10 9 33 33 H 1.08999 * 109.47263 * 59.99260 * 15 13 12 34 34 H 1.09002 * 109.47412 * 180.02562 * 15 13 12 35 35 H 1.09011 * 109.46787 * 300.00049 * 15 13 12 36 36 H 0.97001 * 120.00443 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2104 1.7168 0.0000 4 6 1.1972 2.6651 0.0005 5 6 1.5107 4.0110 0.0000 6 6 2.8327 4.4173 -0.0005 7 6 3.8485 3.4794 -0.0011 8 6 3.5437 2.1270 -0.0005 9 7 4.5723 1.1745 -0.0005 10 6 5.7187 1.4207 -0.6650 11 8 5.8938 2.5004 -1.1960 12 7 6.6711 0.4700 -0.7409 13 6 7.9171 0.7375 -1.4637 14 1 8.1964 1.7828 -1.3318 15 6 7.7155 0.4473 -2.9523 16 6 9.0111 -0.1469 -0.9231 17 1 8.7994 -0.8392 -0.1217 18 6 10.2823 -0.0721 -1.4517 19 7 10.5400 0.7706 -2.4279 20 14 11.6382 -1.1688 -0.7821 21 1 11.0938 -2.0211 0.3052 22 1 12.1616 -2.0306 -1.8724 23 1 12.7373 -0.3259 -0.2466 24 1 -0.3633 0.5138 -0.8899 25 1 -0.3634 -1.0277 0.0005 26 1 -0.3633 0.5138 0.8901 27 1 0.1637 2.3513 0.0005 28 1 0.7211 4.7479 0.0008 29 1 3.0722 5.4703 -0.0051 30 1 4.8797 3.8004 -0.0019 31 1 4.4589 0.3382 0.4778 32 1 6.5315 -0.3912 -0.3172 33 1 6.9242 1.0869 -3.3432 34 1 8.6427 0.6458 -3.4900 35 1 7.4362 -0.5981 -3.0841 36 1 11.4343 0.8229 -2.8001 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000153471903.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:15:28 Heat of formation + Delta-G solvation = -3.131687 kcal Electronic energy + Delta-G solvation = -19171.709261 eV Core-core repulsion = 16168.137506 eV Total energy + Delta-G solvation = -3003.571755 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 280.099 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.15866 -38.34144 -35.14359 -34.18443 -32.41589 -31.26242 -29.81534 -28.99847 -28.12446 -25.24347 -23.08035 -22.76861 -21.03849 -19.81215 -18.29093 -17.87642 -16.90313 -16.03928 -15.41708 -15.21125 -14.88492 -14.46533 -14.19735 -14.00244 -13.95370 -13.76059 -13.19751 -12.82608 -12.64838 -12.38811 -12.00505 -11.72938 -11.32405 -11.08634 -10.99807 -10.75289 -10.39510 -10.30857 -10.22963 -10.08089 -9.67723 -9.34384 -9.03019 -8.56898 -8.26397 -7.89082 -7.29545 -6.12217 -4.21260 1.24166 1.39391 1.44776 2.29946 3.17544 3.24499 3.32599 3.35891 3.62938 3.99503 4.32910 4.81403 4.81931 4.82513 4.92530 5.07723 5.20547 5.29597 5.39793 5.54503 5.60789 5.90213 6.25190 6.33695 6.56066 6.70304 6.81269 6.99979 7.12459 7.15420 7.24114 7.46399 7.63124 7.83506 7.99782 8.15718 8.73066 8.84618 9.23008 9.47055 10.93896 Molecular weight = 280.10amu Principal moments of inertia in cm(-1) A = 0.027687 B = 0.003925 C = 0.003610 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1011.065582 B = 7132.770747 C = 7754.619863 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 S -0.120 6.120 3 C -0.125 4.125 4 C -0.117 4.117 5 C -0.130 4.130 6 C -0.103 4.103 7 C -0.106 4.106 8 C 0.203 3.797 9 N -0.692 5.692 10 C 0.695 3.305 11 O -0.582 6.582 12 N -0.717 5.717 13 C 0.280 3.720 14 H 0.050 0.950 15 C -0.148 4.148 16 C -0.533 4.533 17 H 0.062 0.938 18 C 0.066 3.934 19 N -0.883 5.883 20 Si 0.902 3.098 21 H -0.273 1.273 22 H -0.283 1.283 23 H -0.283 1.283 24 H 0.083 0.917 25 H 0.106 0.894 26 H 0.082 0.918 27 H 0.122 0.878 28 H 0.122 0.878 29 H 0.126 0.874 30 H 0.150 0.850 31 H 0.403 0.597 32 H 0.387 0.613 33 H 0.015 0.985 34 H 0.091 0.909 35 H 0.026 0.974 36 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.445 0.629 6.087 20.385 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.311 4.311 2 S 0.120 5.880 3 C -0.240 4.240 4 C -0.141 4.141 5 C -0.150 4.150 6 C -0.124 4.124 7 C -0.129 4.129 8 C 0.101 3.899 9 N -0.340 5.340 10 C 0.395 3.605 11 O -0.459 6.459 12 N -0.368 5.368 13 C 0.178 3.822 14 H 0.068 0.932 15 C -0.207 4.207 16 C -0.572 4.572 17 H 0.080 0.920 18 C -0.137 4.137 19 N -0.520 5.520 20 Si 0.730 3.270 21 H -0.197 1.197 22 H -0.209 1.209 23 H -0.209 1.209 24 H 0.102 0.898 25 H 0.124 0.876 26 H 0.101 0.899 27 H 0.140 0.860 28 H 0.140 0.860 29 H 0.144 0.856 30 H 0.168 0.832 31 H 0.239 0.761 32 H 0.219 0.781 33 H 0.034 0.966 34 H 0.109 0.891 35 H 0.045 0.955 36 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -18.325 0.548 5.421 19.118 hybrid contribution -0.266 -0.328 0.664 0.786 sum -18.591 0.220 6.085 19.562 Atomic orbital electron populations 1.23641 0.95037 1.06876 1.05501 1.85384 1.06187 1.03223 1.93206 1.21445 0.94898 0.96807 1.10881 1.20857 0.97344 0.92974 1.02895 1.20936 0.96612 0.95003 1.02496 1.21120 0.92297 0.99580 0.99424 1.21440 1.01547 0.90601 0.99267 1.17040 0.84865 0.89225 0.98748 1.42911 1.15198 1.20758 1.55155 1.16122 0.79676 0.85312 0.79349 1.90861 1.79122 1.23909 1.52056 1.45872 1.18568 1.15001 1.57322 1.18708 0.77470 0.98131 0.87882 0.93211 1.22101 1.01402 0.97747 0.99413 1.21245 0.93914 1.22415 1.19579 0.91990 1.24876 0.98482 0.95531 0.94789 1.69913 1.21355 1.35701 1.25063 0.86380 0.81590 0.80225 0.78812 1.19741 1.20867 1.20874 0.89807 0.87556 0.89895 0.85990 0.86026 0.85622 0.83206 0.76110 0.78089 0.96568 0.89087 0.95483 0.92606 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.06 9.15 101.05 0.92 -0.13 16 2 S -0.12 -1.40 21.44 -107.50 -2.31 -3.71 16 3 C -0.12 -1.71 6.12 -38.91 -0.24 -1.95 16 4 C -0.12 -1.36 9.36 -39.40 -0.37 -1.73 16 5 C -0.13 -1.47 10.04 -39.57 -0.40 -1.87 16 6 C -0.10 -1.34 10.04 -39.55 -0.40 -1.74 16 7 C -0.11 -1.73 8.70 -39.43 -0.34 -2.07 16 8 C 0.20 3.29 6.32 -83.42 -0.53 2.77 16 9 N -0.69 -11.63 5.03 -14.06 -0.07 -11.70 16 10 C 0.69 14.55 8.38 -86.92 -0.73 13.83 16 11 O -0.58 -14.15 13.43 5.28 0.07 -14.08 16 12 N -0.72 -15.28 5.07 -59.81 -0.30 -15.58 16 13 C 0.28 7.19 2.56 -69.08 -0.18 7.01 16 14 H 0.05 1.46 7.58 -51.93 -0.39 1.07 16 15 C -0.15 -3.75 9.26 37.15 0.34 -3.40 16 16 C -0.53 -14.14 8.73 -34.44 -0.30 -14.44 16 17 H 0.06 1.57 7.74 -52.49 -0.41 1.17 16 18 C 0.07 1.79 5.30 -17.82 -0.09 1.69 16 19 N -0.88 -24.87 11.32 55.43 0.63 -24.24 16 20 Si 0.90 20.63 29.54 -169.99 -5.02 15.61 16 21 H -0.27 -6.10 7.11 56.52 0.40 -5.70 16 22 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 23 H -0.28 -6.48 7.11 56.52 0.40 -6.07 16 24 H 0.08 0.58 7.75 -51.93 -0.40 0.18 16 25 H 0.11 0.62 8.14 -51.92 -0.42 0.20 16 26 H 0.08 0.53 7.75 -51.92 -0.40 0.13 16 27 H 0.12 1.09 5.88 -52.49 -0.31 0.78 16 28 H 0.12 1.02 8.06 -52.48 -0.42 0.60 16 29 H 0.13 1.34 8.06 -52.49 -0.42 0.92 16 30 H 0.15 2.76 6.19 -52.49 -0.33 2.44 16 31 H 0.40 5.77 7.99 -40.82 -0.33 5.45 16 32 H 0.39 7.15 8.56 -40.82 -0.35 6.80 16 33 H 0.02 0.39 8.14 -51.93 -0.42 -0.03 16 34 H 0.09 2.48 6.07 -51.93 -0.32 2.17 16 35 H 0.03 0.64 8.14 -51.92 -0.42 0.21 16 36 H 0.26 7.03 8.31 -40.82 -0.34 6.69 16 LS Contribution 315.45 15.07 4.75 4.75 Total: -1.00 -30.99 315.45 -9.03 -40.02 By element: Atomic # 1 Polarization: 15.45 SS G_CDS: -4.48 Total: 10.97 kcal Atomic # 6 Polarization: 0.26 SS G_CDS: -2.30 Total: -2.04 kcal Atomic # 7 Polarization: -51.78 SS G_CDS: 0.25 Total: -51.53 kcal Atomic # 8 Polarization: -14.15 SS G_CDS: 0.07 Total: -14.08 kcal Atomic # 14 Polarization: 20.63 SS G_CDS: -5.02 Total: 15.61 kcal Atomic # 16 Polarization: -1.40 SS G_CDS: -2.31 Total: -3.71 kcal Total LS contribution 4.75 Total: 4.75 kcal Total: -30.99 -9.03 -40.02 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000153471903.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.884 kcal (2) G-P(sol) polarization free energy of solvation -30.988 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.896 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.028 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.016 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.132 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds