Wall clock time and date at job start Fri Apr 10 2020 17:15:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09007 * 109.46779 * 2 1 4 4 C 1.50700 * 109.47458 * 119.99340 * 2 1 3 5 5 H 1.08004 * 119.99763 * 119.99880 * 4 2 1 6 6 C 1.37869 * 120.00085 * 300.00742 * 4 2 1 7 7 N 1.31516 * 120.00491 * 359.97438 * 6 4 2 8 8 Si 1.86799 * 120.00165 * 179.97438 * 6 4 2 9 9 H 1.48499 * 109.47184 * 89.99779 * 8 6 4 10 10 H 1.48498 * 109.47684 * 210.00053 * 8 6 4 11 11 H 1.48504 * 109.47091 * 329.99968 * 8 6 4 12 12 N 1.46498 * 109.47305 * 239.99885 * 2 1 3 13 13 C 1.46498 * 120.00115 * 299.99682 * 12 2 1 14 14 C 1.34776 * 119.99846 * 119.99555 * 12 2 1 15 15 O 1.21633 * 120.00303 * 2.87678 * 14 12 2 16 16 C 1.47266 * 119.99874 * 182.87383 * 14 12 2 17 17 C 1.35214 * 123.14111 * 173.21371 * 16 14 12 18 18 S 1.70948 * 108.82585 * 179.72913 * 17 16 14 19 19 C 1.70774 * 91.12739 * 359.97438 * 18 17 16 20 20 C 1.50703 * 124.71621 * 179.97438 * 19 18 17 21 21 C 1.53002 * 117.49852 * 8.60015 * 20 19 18 22 22 C 1.53003 * 117.49791 * 299.97631 * 20 19 18 23 23 N 1.28642 * 110.56360 * 0.02562 * 19 18 17 24 24 H 1.09004 * 109.47368 * 60.00621 * 1 2 3 25 25 H 1.08999 * 109.46876 * 180.02562 * 1 2 3 26 26 H 1.09002 * 109.47532 * 300.00034 * 1 2 3 27 27 H 0.97000 * 120.00372 * 180.02562 * 7 6 4 28 28 H 1.08997 * 109.47281 * 264.02598 * 13 12 2 29 29 H 1.08998 * 109.46856 * 24.03077 * 13 12 2 30 30 H 1.09004 * 109.47194 * 144.02368 * 13 12 2 31 31 H 1.07997 * 125.58682 * 359.72333 * 17 16 14 32 32 H 1.09002 * 115.54744 * 154.30926 * 20 19 18 33 33 H 1.08999 * 117.50262 * 359.97438 * 21 20 19 34 34 H 1.08998 * 117.49434 * 145.02377 * 21 20 19 35 35 H 1.09004 * 117.49454 * 214.97436 * 22 20 19 36 36 H 1.08995 * 117.49849 * 359.97438 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7103 1.2305 5 1 2.6533 -1.5884 1.1315 6 6 1.6992 -0.2392 2.4827 7 7 0.9434 0.8303 2.6034 8 14 2.3214 -1.1200 4.0080 9 1 3.6297 -0.5454 4.4124 10 1 1.3432 -0.9490 5.1121 11 1 2.4861 -2.5659 3.7121 12 7 2.0183 -0.6906 -1.1961 13 6 1.6645 -2.0932 -1.4279 14 6 2.7931 -0.0356 -2.0833 15 8 3.1301 1.1126 -1.8652 16 6 3.2318 -0.7100 -3.3168 17 6 3.8954 -0.0763 -4.3098 18 16 4.2299 -1.1996 -5.5543 19 6 3.4656 -2.4499 -4.6773 20 6 3.3343 -3.8744 -5.1512 21 6 4.0991 -4.2716 -6.4154 22 6 2.5775 -4.1170 -6.4586 23 7 3.0166 -2.0063 -3.5563 24 1 -0.3634 0.5137 -0.8901 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3634 0.5138 0.8900 27 1 0.7094 1.1619 3.4844 28 1 2.4674 -2.7351 -1.0654 29 1 0.7429 -2.3282 -0.8955 30 1 1.5199 -2.2598 -2.4954 31 1 4.1692 0.9684 -4.3159 32 1 3.2355 -4.6239 -4.3659 33 1 4.6969 -3.5026 -6.9046 34 1 4.5037 -5.2827 -6.4620 35 1 1.9812 -5.0264 -6.5336 36 1 2.1742 -3.2464 -6.9757 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000171550102.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:15:48 Heat of formation + Delta-G solvation = 49.186405 kcal Electronic energy + Delta-G solvation = -19542.127478 eV Core-core repulsion = 16540.824406 eV Total energy + Delta-G solvation = -3001.303072 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 280.099 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -40.32184 -38.38657 -37.16051 -35.31738 -32.73963 -30.45541 -29.39274 -25.98565 -25.94759 -25.16107 -23.63300 -22.78499 -21.05043 -20.13141 -18.84224 -17.69282 -16.48917 -16.39370 -15.57023 -15.33798 -15.12700 -14.75604 -14.24438 -13.74148 -13.59882 -12.93625 -12.54507 -12.50424 -12.18031 -12.16674 -11.83096 -11.47089 -11.39548 -11.07124 -11.00024 -10.88622 -10.78361 -10.66229 -10.20078 -10.12145 -9.57593 -9.45308 -9.13681 -9.01362 -8.73413 -8.38620 -7.48971 -6.02653 -4.10020 0.59089 1.22654 1.64241 2.22657 3.30933 3.36868 3.39687 3.47666 3.73769 3.94886 4.10669 4.44392 4.45457 4.59572 4.80833 5.05295 5.25401 5.28200 5.32260 5.45544 5.50832 5.68883 5.72118 5.90957 6.20992 6.47677 6.68637 6.83174 6.91264 7.09919 7.44386 7.53888 7.63506 7.76417 8.05903 8.23816 8.57122 8.86230 9.05552 9.55986 11.02793 Molecular weight = 280.10amu Principal moments of inertia in cm(-1) A = 0.027251 B = 0.004375 C = 0.004117 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1027.233971 B = 6397.821527 C = 6800.122371 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.255 3.745 3 H 0.064 0.936 4 C -0.522 4.522 5 H 0.059 0.941 6 C 0.064 3.936 7 N -0.889 5.889 8 Si 0.899 3.101 9 H -0.280 1.280 10 H -0.285 1.285 11 H -0.274 1.274 12 N -0.570 5.570 13 C 0.086 3.914 14 C 0.572 3.428 15 O -0.549 6.549 16 C 0.030 3.970 17 C -0.232 4.232 18 S 0.181 5.819 19 C 0.048 3.952 20 C -0.081 4.081 21 C -0.170 4.170 22 C -0.161 4.161 23 N -0.427 5.427 24 H 0.011 0.989 25 H 0.031 0.969 26 H 0.095 0.905 27 H 0.263 0.737 28 H 0.044 0.956 29 H 0.063 0.937 30 H 0.086 0.914 31 H 0.188 0.812 32 H 0.135 0.865 33 H 0.098 0.902 34 H 0.109 0.891 35 H 0.107 0.893 36 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.105 -9.743 -19.332 22.034 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.155 3.845 3 H 0.081 0.919 4 C -0.561 4.561 5 H 0.078 0.922 6 C -0.138 4.138 7 N -0.528 5.528 8 Si 0.727 3.273 9 H -0.206 1.206 10 H -0.211 1.211 11 H -0.199 1.199 12 N -0.298 5.298 13 C -0.058 4.058 14 C 0.356 3.644 15 O -0.429 6.429 16 C -0.104 4.104 17 C -0.374 4.374 18 S 0.438 5.562 19 C -0.230 4.230 20 C -0.103 4.103 21 C -0.208 4.208 22 C -0.199 4.199 23 N -0.142 5.142 24 H 0.030 0.970 25 H 0.051 0.949 26 H 0.113 0.887 27 H 0.073 0.927 28 H 0.063 0.937 29 H 0.081 0.919 30 H 0.103 0.897 31 H 0.205 0.795 32 H 0.153 0.847 33 H 0.116 0.884 34 H 0.127 0.873 35 H 0.125 0.875 36 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges 4.377 -9.307 -19.579 22.116 hybrid contribution 0.021 -0.042 1.857 1.858 sum 4.398 -9.349 -17.722 20.513 Atomic orbital electron populations 1.22095 0.97991 0.99536 1.00844 1.19034 0.91006 0.94529 0.79905 0.91856 1.21314 1.31652 1.12927 0.90171 0.92236 1.24885 0.94967 0.95018 0.98924 1.69881 1.36496 1.22697 1.23701 0.86478 0.78608 0.79914 0.82292 1.20628 1.21117 1.19909 1.48126 1.47031 1.12281 1.22378 1.21982 1.00086 0.81722 1.01987 1.17120 0.79997 0.85556 0.81747 1.90761 1.57854 1.17381 1.76879 1.20882 1.02470 0.88703 0.98379 1.26555 1.05900 1.06831 0.98089 1.82504 1.52910 0.99736 1.21072 1.26399 1.01832 0.99969 0.94796 1.20386 1.07003 0.90248 0.92666 1.23142 0.94915 1.03572 0.99213 1.23144 0.94504 1.04112 0.98179 1.67316 1.18531 1.11900 1.16472 0.96977 0.94949 0.88680 0.92723 0.93713 0.91868 0.89652 0.79495 0.84744 0.88377 0.87283 0.87459 0.88248 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.66 8.96 37.16 0.33 -3.33 16 2 C 0.26 6.90 2.62 -69.09 -0.18 6.71 16 3 H 0.06 1.95 6.90 -51.93 -0.36 1.59 16 4 C -0.52 -14.80 8.37 -34.44 -0.29 -15.08 16 5 H 0.06 1.69 7.65 -52.48 -0.40 1.29 16 6 C 0.06 1.80 5.30 -17.82 -0.09 1.71 16 7 N -0.89 -25.77 11.32 55.43 0.63 -25.14 16 8 Si 0.90 21.69 29.54 -169.99 -5.02 16.67 16 9 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 10 H -0.29 -6.76 7.11 56.52 0.40 -6.35 16 11 H -0.27 -6.50 7.11 56.52 0.40 -6.10 16 12 N -0.57 -13.51 2.75 -176.59 -0.49 -14.00 16 13 C 0.09 1.72 8.67 59.85 0.52 2.24 16 14 C 0.57 13.29 7.65 -12.59 -0.10 13.20 16 15 O -0.55 -14.38 16.06 5.25 0.08 -14.29 16 16 C 0.03 0.55 6.49 -84.52 -0.55 0.01 16 17 C -0.23 -3.51 10.62 29.66 0.31 -3.19 16 18 S 0.18 1.96 21.65 -107.50 -2.33 -0.37 16 19 C 0.05 0.61 6.99 -13.61 -0.10 0.52 16 20 C -0.08 -0.75 6.33 -91.77 -0.58 -1.33 16 21 C -0.17 -1.10 10.01 -26.73 -0.27 -1.36 16 22 C -0.16 -1.11 10.23 -26.73 -0.27 -1.38 16 23 N -0.43 -6.99 6.76 -8.51 -0.06 -7.05 16 24 H 0.01 0.27 8.14 -51.93 -0.42 -0.16 16 25 H 0.03 0.75 6.67 -51.93 -0.35 0.40 16 26 H 0.09 2.57 6.07 -51.93 -0.32 2.25 16 27 H 0.26 7.22 8.31 -40.82 -0.34 6.88 16 28 H 0.04 0.89 8.14 -51.93 -0.42 0.47 16 29 H 0.06 1.25 6.44 -51.93 -0.33 0.92 16 30 H 0.09 1.55 5.27 -51.93 -0.27 1.28 16 31 H 0.19 2.66 8.04 -52.49 -0.42 2.24 16 32 H 0.13 1.21 8.14 -51.93 -0.42 0.79 16 33 H 0.10 0.60 7.21 -51.93 -0.37 0.23 16 34 H 0.11 0.53 8.14 -51.93 -0.42 0.11 16 35 H 0.11 0.59 8.14 -51.93 -0.42 0.16 16 36 H 0.10 0.70 8.14 -51.93 -0.42 0.27 16 LS Contribution 313.07 15.07 4.72 4.72 Total: -1.00 -32.65 313.07 -8.22 -40.87 By element: Atomic # 1 Polarization: 4.39 SS G_CDS: -4.50 Total: -0.11 kcal Atomic # 6 Polarization: -0.04 SS G_CDS: -1.26 Total: -1.30 kcal Atomic # 7 Polarization: -46.27 SS G_CDS: 0.08 Total: -46.19 kcal Atomic # 8 Polarization: -14.38 SS G_CDS: 0.08 Total: -14.29 kcal Atomic # 14 Polarization: 21.69 SS G_CDS: -5.02 Total: 16.67 kcal Atomic # 16 Polarization: 1.96 SS G_CDS: -2.33 Total: -0.37 kcal Total LS contribution 4.72 Total: 4.72 kcal Total: -32.65 -8.22 -40.87 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000171550102.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.053 kcal (2) G-P(sol) polarization free energy of solvation -32.647 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 57.405 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.219 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.866 kcal (6) G-S(sol) free energy of system = (1) + (5) 49.186 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds