Wall clock time and date at job start Fri Apr 10 2020 17:15:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09007 * 109.46779 * 2 1 4 4 C 1.50700 * 109.47458 * 119.99340 * 2 1 3 5 5 H 1.08004 * 119.99763 * 119.99880 * 4 2 1 6 6 C 1.37869 * 120.00085 * 300.00742 * 4 2 1 7 7 N 1.31516 * 120.00491 * 359.97438 * 6 4 2 8 8 Si 1.86799 * 120.00165 * 179.97438 * 6 4 2 9 9 H 1.48499 * 109.47184 * 89.99779 * 8 6 4 10 10 H 1.48498 * 109.47684 * 210.00053 * 8 6 4 11 11 H 1.48504 * 109.47091 * 329.99968 * 8 6 4 12 12 N 1.46498 * 109.47305 * 239.99885 * 2 1 3 13 13 C 1.46498 * 120.00115 * 299.99682 * 12 2 1 14 14 C 1.34776 * 119.99846 * 119.99555 * 12 2 1 15 15 O 1.21633 * 120.00303 * 2.87678 * 14 12 2 16 16 C 1.47266 * 119.99874 * 182.87383 * 14 12 2 17 17 C 1.35214 * 123.14111 * 173.21371 * 16 14 12 18 18 S 1.70948 * 108.82585 * 179.72913 * 17 16 14 19 19 C 1.70774 * 91.12739 * 359.97438 * 18 17 16 20 20 C 1.50703 * 124.71621 * 179.97438 * 19 18 17 21 21 C 1.53002 * 117.49852 * 8.60015 * 20 19 18 22 22 C 1.53003 * 117.49791 * 299.97631 * 20 19 18 23 23 N 1.28642 * 110.56360 * 0.02562 * 19 18 17 24 24 H 1.09004 * 109.47368 * 60.00621 * 1 2 3 25 25 H 1.08999 * 109.46876 * 180.02562 * 1 2 3 26 26 H 1.09002 * 109.47532 * 300.00034 * 1 2 3 27 27 H 0.97000 * 120.00372 * 180.02562 * 7 6 4 28 28 H 1.08997 * 109.47281 * 264.02598 * 13 12 2 29 29 H 1.08998 * 109.46856 * 24.03077 * 13 12 2 30 30 H 1.09004 * 109.47194 * 144.02368 * 13 12 2 31 31 H 1.07997 * 125.58682 * 359.72333 * 17 16 14 32 32 H 1.09002 * 115.54744 * 154.30926 * 20 19 18 33 33 H 1.08999 * 117.50262 * 359.97438 * 21 20 19 34 34 H 1.08998 * 117.49434 * 145.02377 * 21 20 19 35 35 H 1.09004 * 117.49454 * 214.97436 * 22 20 19 36 36 H 1.08995 * 117.49849 * 359.97438 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7103 1.2305 5 1 2.6533 -1.5884 1.1315 6 6 1.6992 -0.2392 2.4827 7 7 0.9434 0.8303 2.6034 8 14 2.3214 -1.1200 4.0080 9 1 3.6297 -0.5454 4.4124 10 1 1.3432 -0.9490 5.1121 11 1 2.4861 -2.5659 3.7121 12 7 2.0183 -0.6906 -1.1961 13 6 1.6645 -2.0932 -1.4279 14 6 2.7931 -0.0356 -2.0833 15 8 3.1301 1.1126 -1.8652 16 6 3.2318 -0.7100 -3.3168 17 6 3.8954 -0.0763 -4.3098 18 16 4.2299 -1.1996 -5.5543 19 6 3.4656 -2.4499 -4.6773 20 6 3.3343 -3.8744 -5.1512 21 6 4.0991 -4.2716 -6.4154 22 6 2.5775 -4.1170 -6.4586 23 7 3.0166 -2.0063 -3.5563 24 1 -0.3634 0.5137 -0.8901 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3634 0.5138 0.8900 27 1 0.7094 1.1619 3.4844 28 1 2.4674 -2.7351 -1.0654 29 1 0.7429 -2.3282 -0.8955 30 1 1.5199 -2.2598 -2.4954 31 1 4.1692 0.9684 -4.3159 32 1 3.2355 -4.6239 -4.3659 33 1 4.6969 -3.5026 -6.9046 34 1 4.5037 -5.2827 -6.4620 35 1 1.9812 -5.0264 -6.5336 36 1 2.1742 -3.2464 -6.9757 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000171550102.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:15:48 Heat of formation + Delta-G solvation = 28.707696 kcal Electronic energy + Delta-G solvation = -19543.015502 eV Core-core repulsion = 16540.824406 eV Total energy + Delta-G solvation = -3002.191095 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 280.099 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -41.68332 -39.86022 -37.95213 -37.25212 -34.80566 -31.82497 -31.21334 -27.67885 -27.36182 -27.09915 -24.96468 -23.27316 -22.45690 -21.41838 -20.25179 -19.16207 -18.49087 -17.61056 -17.03574 -16.97147 -16.58059 -16.24781 -15.49500 -15.06834 -14.89674 -14.60818 -14.37729 -14.00940 -13.57220 -13.37957 -13.23784 -12.99714 -12.85076 -12.74652 -12.61403 -12.34468 -12.22972 -12.13876 -11.83585 -11.45238 -11.24750 -11.07533 -10.57474 -10.55585 -10.41450 -9.81915 -9.35516 -8.18004 -6.35066 -0.53126 0.22436 0.55197 0.92652 1.38915 1.40329 1.51059 2.23056 2.31789 2.44301 2.80400 3.02689 3.09292 3.65643 3.85140 4.04460 4.08681 4.17002 4.44476 4.50455 4.60779 4.74771 4.80520 4.82534 4.86487 5.00875 5.03777 5.13572 5.22188 5.25655 5.39100 5.56827 5.62965 5.96066 6.10671 6.44185 6.69611 6.72899 7.18555 7.38369 8.86748 Molecular weight = 280.10amu Principal moments of inertia in cm(-1) A = 0.027251 B = 0.004375 C = 0.004117 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1027.233971 B = 6397.821527 C = 6800.122371 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C 0.258 3.742 3 H 0.013 0.987 4 C -0.541 4.541 5 H 0.054 0.946 6 C 0.017 3.983 7 N -0.916 5.916 8 Si 0.968 3.032 9 H -0.280 1.280 10 H -0.274 1.274 11 H -0.265 1.265 12 N -0.580 5.580 13 C 0.095 3.905 14 C 0.562 3.438 15 O -0.596 6.596 16 C -0.002 4.002 17 C -0.247 4.247 18 S 0.297 5.703 19 C 0.043 3.957 20 C -0.111 4.111 21 C -0.151 4.151 22 C -0.151 4.151 23 N -0.459 5.459 24 H 0.020 0.980 25 H 0.046 0.954 26 H 0.074 0.926 27 H 0.267 0.733 28 H 0.041 0.959 29 H 0.061 0.939 30 H 0.108 0.892 31 H 0.188 0.812 32 H 0.133 0.867 33 H 0.105 0.895 34 H 0.130 0.870 35 H 0.124 0.876 36 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.921 -12.281 -21.575 25.309 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C 0.156 3.844 3 H 0.031 0.969 4 C -0.580 4.580 5 H 0.072 0.928 6 C -0.183 4.183 7 N -0.554 5.554 8 Si 0.792 3.208 9 H -0.206 1.206 10 H -0.199 1.199 11 H -0.189 1.189 12 N -0.308 5.308 13 C -0.047 4.047 14 C 0.349 3.651 15 O -0.479 6.479 16 C -0.137 4.137 17 C -0.389 4.389 18 S 0.556 5.444 19 C -0.235 4.235 20 C -0.133 4.133 21 C -0.189 4.189 22 C -0.190 4.190 23 N -0.175 5.175 24 H 0.039 0.961 25 H 0.065 0.935 26 H 0.092 0.908 27 H 0.076 0.924 28 H 0.060 0.940 29 H 0.080 0.920 30 H 0.126 0.874 31 H 0.205 0.795 32 H 0.151 0.849 33 H 0.123 0.877 34 H 0.148 0.852 35 H 0.142 0.858 36 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges 5.193 -11.881 -21.863 25.419 hybrid contribution -0.153 0.735 2.360 2.477 sum 5.039 -11.146 -19.503 23.022 Atomic orbital electron populations 1.21877 0.96672 1.00197 1.00183 1.18694 0.91987 0.92304 0.81376 0.96893 1.21497 1.32198 1.13041 0.91215 0.92790 1.25737 0.94929 0.95662 1.01932 1.70010 1.37061 1.23747 1.24614 0.85413 0.77959 0.79016 0.78370 1.20636 1.19948 1.18904 1.48136 1.47418 1.13548 1.21704 1.22064 0.99651 0.79528 1.03479 1.17820 0.79031 0.85267 0.83008 1.90704 1.59448 1.19461 1.78288 1.20209 1.05732 0.90216 0.97514 1.26843 1.04649 1.08174 0.99269 1.82049 1.49721 0.95790 1.16837 1.27025 1.00405 1.02024 0.94046 1.20551 1.10546 0.88184 0.93972 1.23309 0.94750 1.04830 0.96039 1.23285 0.95274 1.04864 0.95552 1.67157 1.20707 1.10866 1.18767 0.96071 0.93460 0.90778 0.92411 0.94010 0.92008 0.87411 0.79472 0.84905 0.87709 0.85224 0.85817 0.88148 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -6.78 8.96 71.98 0.64 -6.13 16 2 C 0.26 14.65 2.62 44.24 0.12 14.77 16 3 H 0.01 0.86 6.90 -2.38 -0.02 0.85 16 4 C -0.54 -31.67 8.37 25.60 0.21 -31.45 16 5 H 0.05 3.14 7.65 -2.91 -0.02 3.12 16 6 C 0.02 0.98 5.30 84.65 0.45 1.43 16 7 N -0.92 -54.48 11.32 21.44 0.24 -54.24 16 8 Si 0.97 44.92 29.54 68.60 2.03 46.95 16 9 H -0.28 -12.96 7.11 99.48 0.71 -12.26 16 10 H -0.27 -12.18 7.11 99.48 0.71 -11.47 16 11 H -0.26 -11.80 7.11 99.48 0.71 -11.09 16 12 N -0.58 -28.74 2.75 -830.86 -2.29 -31.03 16 13 C 0.10 3.88 8.67 127.77 1.11 4.98 16 14 C 0.56 27.48 7.65 86.62 0.66 28.15 16 15 O -0.60 -33.36 16.06 -4.14 -0.07 -33.43 16 16 C 0.00 -0.09 6.49 40.56 0.26 0.18 16 17 C -0.25 -7.31 10.62 67.12 0.71 -6.59 16 18 S 0.30 5.51 21.65 -56.49 -1.22 4.29 16 19 C 0.04 0.99 6.99 88.58 0.62 1.61 16 20 C -0.11 -1.71 6.33 -11.54 -0.07 -1.78 16 21 C -0.15 -1.28 10.01 30.60 0.31 -0.98 16 22 C -0.15 -1.49 10.23 30.60 0.31 -1.18 16 23 N -0.46 -14.75 6.76 -180.82 -1.22 -15.97 16 24 H 0.02 1.00 8.14 -2.39 -0.02 0.98 16 25 H 0.05 2.24 6.67 -2.39 -0.02 2.23 16 26 H 0.07 4.15 6.07 -2.39 -0.01 4.14 16 27 H 0.27 14.89 8.31 -92.71 -0.77 14.12 16 28 H 0.04 1.69 8.14 -2.39 -0.02 1.67 16 29 H 0.06 2.47 6.44 -2.39 -0.02 2.45 16 30 H 0.11 3.92 5.27 -2.39 -0.01 3.91 16 31 H 0.19 5.37 8.04 -2.91 -0.02 5.35 16 32 H 0.13 2.11 8.14 -2.39 -0.02 2.09 16 33 H 0.10 0.75 7.21 -2.39 -0.02 0.73 16 34 H 0.13 0.63 8.14 -2.39 -0.02 0.61 16 35 H 0.12 0.85 8.14 -2.38 -0.02 0.83 16 36 H 0.10 1.00 8.14 -2.39 -0.02 0.98 16 Total: -1.00 -75.10 313.07 3.90 -71.19 By element: Atomic # 1 Polarization: 8.15 SS G_CDS: 1.10 Total: 9.24 kcal Atomic # 6 Polarization: -2.34 SS G_CDS: 5.34 Total: 2.99 kcal Atomic # 7 Polarization: -97.97 SS G_CDS: -3.27 Total: -101.24 kcal Atomic # 8 Polarization: -33.36 SS G_CDS: -0.07 Total: -33.43 kcal Atomic # 14 Polarization: 44.92 SS G_CDS: 2.03 Total: 46.95 kcal Atomic # 16 Polarization: 5.51 SS G_CDS: -1.22 Total: 4.29 kcal Total: -75.10 3.90 -71.19 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000171550102.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 99.901 kcal (2) G-P(sol) polarization free energy of solvation -75.095 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.806 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.902 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.194 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.708 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds