Wall clock time and date at job start Fri Apr 10 2020 17:16:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09004 * 109.46961 * 2 1 4 4 C 1.50697 * 109.47217 * 239.99523 * 2 1 3 5 5 H 1.08001 * 120.00040 * 245.46302 * 4 2 1 6 6 C 1.37877 * 120.00057 * 65.46521 * 4 2 1 7 7 N 1.31519 * 119.99869 * 9.55495 * 6 4 2 8 8 Si 1.86794 * 119.99998 * 189.55849 * 6 4 2 9 9 H 1.48504 * 109.47413 * 84.99254 * 8 6 4 10 10 H 1.48504 * 109.47330 * 204.99188 * 8 6 4 11 11 H 1.48498 * 109.47435 * 324.99361 * 8 6 4 12 12 N 1.46502 * 109.46937 * 119.99805 * 2 1 3 13 13 C 1.34780 * 119.99847 * 275.00212 * 12 2 1 14 14 O 1.21284 * 120.00075 * 359.97438 * 13 12 2 15 15 C 1.50697 * 120.00212 * 180.02562 * 13 12 2 16 16 S 1.81391 * 109.47535 * 179.97438 * 15 13 12 17 17 C 1.81396 * 103.00338 * 179.97438 * 16 15 13 18 18 C 1.50697 * 109.47387 * 180.02562 * 17 16 15 19 19 C 1.38231 * 119.62219 * 90.00114 * 18 17 16 20 20 C 1.38630 * 119.16140 * 179.97438 * 19 18 17 21 21 C 1.38673 * 118.41984 * 359.97438 * 20 19 18 22 22 C 1.38180 * 119.16212 * 0.02562 * 21 20 19 23 23 N 1.31855 * 119.61823 * 269.72346 * 18 17 16 24 24 H 1.08996 * 109.47156 * 183.67881 * 1 2 3 25 25 H 1.08996 * 109.46715 * 303.68529 * 1 2 3 26 26 H 1.09005 * 109.46844 * 63.68135 * 1 2 3 27 27 H 0.96999 * 120.00039 * 180.02562 * 7 6 4 28 28 H 0.96992 * 120.00532 * 95.00002 * 12 2 1 29 29 H 1.09000 * 109.47027 * 299.99913 * 15 13 12 30 30 H 1.08999 * 109.47130 * 59.99264 * 15 13 12 31 31 H 1.09001 * 109.46912 * 299.99988 * 17 16 15 32 32 H 1.09000 * 109.47432 * 59.99792 * 17 16 15 33 33 H 1.08000 * 120.41759 * 359.95257 * 19 18 17 34 34 H 1.08000 * 120.78467 * 180.02562 * 20 19 18 35 35 H 1.07997 * 120.41621 * 180.02562 * 21 20 19 36 36 H 1.08005 * 119.61047 * 180.02562 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7105 -1.2304 5 1 2.5786 -1.6372 -1.1337 6 6 1.7947 -0.1775 -2.4796 7 7 1.2994 1.0355 -2.5936 8 14 2.1761 -1.1783 -4.0100 9 1 1.0241 -2.0613 -4.3239 10 1 2.4229 -0.2618 -5.1521 11 1 3.3845 -2.0076 -3.7708 12 7 2.0183 -0.6906 1.1962 13 6 2.1470 -0.0182 2.3572 14 8 1.8589 1.1587 2.4115 15 6 2.6498 -0.7283 3.5876 16 16 2.7113 0.4374 4.9760 17 6 3.3287 -0.5856 6.3408 18 6 3.4369 0.2531 7.5881 19 6 2.3573 0.3430 8.4467 20 6 2.4675 1.1168 9.5917 21 6 3.6650 1.7736 9.8317 22 6 4.7011 1.6365 8.9278 23 7 4.5622 0.8882 7.8508 24 1 -0.3633 -1.0255 0.0659 25 1 -0.3632 0.5700 0.8551 26 1 -0.3633 0.4557 -0.9212 27 1 1.1319 1.4103 -3.4724 28 1 2.2490 -1.6317 1.1528 29 1 1.9776 -1.5506 3.8327 30 1 3.6491 -1.1202 3.3980 31 1 2.6389 -1.4109 6.5170 32 1 4.3108 -0.9817 6.0825 33 1 1.4395 -0.1825 8.2281 34 1 1.6406 1.2051 10.2808 35 1 3.7862 2.3846 10.7140 36 1 5.6370 2.1445 9.1078 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000194636939.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:16:28 Heat of formation + Delta-G solvation = -7.264552 kcal Electronic energy + Delta-G solvation = -18175.258196 eV Core-core repulsion = 15171.507227 eV Total energy + Delta-G solvation = -3003.750969 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 280.099 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -40.37332 -38.80645 -34.80949 -33.30438 -32.55042 -32.42177 -30.38777 -28.30132 -27.73684 -25.22838 -23.77069 -22.50143 -21.34828 -19.51463 -17.53668 -16.97101 -16.57358 -16.13665 -15.83050 -15.66661 -15.19646 -14.99876 -14.51569 -13.98432 -13.71082 -13.57663 -13.12745 -13.03240 -12.69942 -12.42221 -12.29113 -11.92313 -11.73057 -11.04670 -11.01431 -10.77260 -10.37833 -10.29243 -10.17439 -9.97605 -9.68594 -9.16908 -9.14797 -9.10432 -8.51983 -7.99666 -7.51162 -6.15541 -4.21470 0.62244 1.01341 1.72155 2.58318 3.24456 3.28696 3.31618 3.32990 3.63490 3.93854 4.04781 4.36687 4.38517 4.58314 4.77211 4.84278 5.06662 5.12768 5.17306 5.20248 5.27557 5.41599 5.49003 5.52106 5.83296 5.89778 6.40760 6.74165 6.87529 7.06076 7.38837 7.51038 7.65095 7.74259 7.82453 8.04395 8.60143 8.76695 9.05668 9.44372 10.93010 Molecular weight = 280.10amu Principal moments of inertia in cm(-1) A = 0.051428 B = 0.002718 C = 0.002691 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 544.321133 B =10300.507291 C =10400.891358 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.263 3.737 3 H 0.057 0.943 4 C -0.538 4.538 5 H 0.061 0.939 6 C 0.068 3.932 7 N -0.880 5.880 8 Si 0.899 3.101 9 H -0.278 1.278 10 H -0.286 1.286 11 H -0.274 1.274 12 N -0.704 5.704 13 C 0.517 3.483 14 O -0.534 6.534 15 C -0.131 4.131 16 S -0.156 6.156 17 C -0.068 4.068 18 C 0.148 3.852 19 C -0.155 4.155 20 C -0.075 4.075 21 C -0.175 4.175 22 C 0.102 3.898 23 N -0.472 5.472 24 H 0.029 0.971 25 H 0.020 0.980 26 H 0.073 0.927 27 H 0.265 0.735 28 H 0.389 0.611 29 H 0.104 0.896 30 H 0.106 0.894 31 H 0.096 0.904 32 H 0.099 0.901 33 H 0.138 0.862 34 H 0.136 0.864 35 H 0.135 0.865 36 H 0.157 0.843 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.082 -4.677 22.790 23.468 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C 0.162 3.838 3 H 0.074 0.926 4 C -0.576 4.576 5 H 0.080 0.920 6 C -0.136 4.136 7 N -0.517 5.517 8 Si 0.726 3.274 9 H -0.204 1.204 10 H -0.211 1.211 11 H -0.199 1.199 12 N -0.353 5.353 13 C 0.300 3.700 14 O -0.412 6.412 15 C -0.282 4.282 16 S 0.071 5.929 17 C -0.216 4.216 18 C 0.010 3.990 19 C -0.176 4.176 20 C -0.101 4.101 21 C -0.195 4.195 22 C -0.055 4.055 23 N -0.181 5.181 24 H 0.048 0.952 25 H 0.039 0.961 26 H 0.092 0.908 27 H 0.075 0.925 28 H 0.222 0.778 29 H 0.123 0.877 30 H 0.124 0.876 31 H 0.114 0.886 32 H 0.118 0.882 33 H 0.156 0.844 34 H 0.154 0.846 35 H 0.153 0.847 36 H 0.175 0.825 Dipole moment (debyes) X Y Z Total from point charges 3.235 -2.707 22.031 22.431 hybrid contribution -0.096 -2.256 -0.331 2.283 sum 3.138 -4.963 21.700 22.480 Atomic orbital electron populations 1.22020 0.98767 0.98627 1.00640 1.18794 0.90616 0.94629 0.79792 0.92551 1.21153 1.37357 1.08697 0.90393 0.92040 1.24898 0.94956 0.94630 0.99072 1.69988 1.43698 1.13711 1.24295 0.86505 0.78707 0.79920 0.82220 1.20409 1.21132 1.19901 1.46440 1.65167 1.13555 1.10113 1.19486 0.79231 0.87406 0.83909 1.90712 1.50482 1.15511 1.84449 1.23651 1.05950 1.01903 0.96712 1.87810 1.86126 1.16757 1.02184 1.22330 1.05638 0.99408 0.94232 1.20341 0.89613 0.95015 0.94031 1.21974 0.99763 1.00613 0.95287 1.21593 0.97656 0.94387 0.96449 1.22176 0.94630 1.01363 1.01369 1.22769 0.98915 0.94563 0.89293 1.67441 1.24834 1.06799 1.19058 0.95223 0.96070 0.90795 0.92490 0.77847 0.87730 0.87566 0.88570 0.88214 0.84422 0.84622 0.84703 0.82538 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.48 9.36 37.16 0.35 -3.13 16 2 C 0.26 6.71 2.42 -69.08 -0.17 6.55 16 3 H 0.06 1.69 7.52 -51.93 -0.39 1.30 16 4 C -0.54 -14.23 8.66 -34.44 -0.30 -14.53 16 5 H 0.06 1.54 7.74 -52.49 -0.41 1.14 16 6 C 0.07 1.85 5.17 -17.82 -0.09 1.76 16 7 N -0.88 -25.18 12.16 55.43 0.67 -24.50 16 8 Si 0.90 20.62 29.55 -169.99 -5.02 15.59 16 9 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 10 H -0.29 -6.57 7.11 56.52 0.40 -6.16 16 11 H -0.27 -6.17 7.11 56.52 0.40 -5.76 16 12 N -0.70 -14.52 5.07 -54.93 -0.28 -14.80 16 13 C 0.52 10.41 7.81 -10.99 -0.09 10.32 16 14 O -0.53 -13.19 15.53 5.55 0.09 -13.11 16 15 C -0.13 -1.87 6.42 36.00 0.23 -1.64 16 16 S -0.16 -2.39 20.86 -107.50 -2.24 -4.63 16 17 C -0.07 -0.75 6.23 36.00 0.22 -0.52 16 18 C 0.15 1.72 6.04 -82.59 -0.50 1.22 16 19 C -0.15 -1.47 9.74 -39.44 -0.38 -1.86 16 20 C -0.07 -0.59 10.18 -39.28 -0.40 -0.99 16 21 C -0.17 -1.35 10.11 -39.44 -0.40 -1.75 16 22 C 0.10 0.97 11.18 -17.55 -0.20 0.78 16 23 N -0.47 -5.85 10.27 -9.47 -0.10 -5.95 16 24 H 0.03 0.66 8.14 -51.93 -0.42 0.23 16 25 H 0.02 0.50 8.14 -51.93 -0.42 0.07 16 26 H 0.07 1.95 6.83 -51.93 -0.35 1.60 16 27 H 0.27 7.18 8.31 -40.82 -0.34 6.84 16 28 H 0.39 6.73 8.53 -40.82 -0.35 6.39 16 29 H 0.10 1.19 8.14 -51.92 -0.42 0.77 16 30 H 0.11 1.30 8.14 -51.92 -0.42 0.87 16 31 H 0.10 0.81 8.08 -51.92 -0.42 0.39 16 32 H 0.10 1.05 8.14 -51.92 -0.42 0.63 16 33 H 0.14 1.05 8.06 -52.49 -0.42 0.63 16 34 H 0.14 0.70 8.06 -52.49 -0.42 0.28 16 35 H 0.14 0.65 8.06 -52.49 -0.42 0.23 16 36 H 0.16 1.07 8.06 -52.48 -0.42 0.65 16 LS Contribution 328.03 15.07 4.94 4.94 Total: -1.00 -33.53 328.03 -8.51 -42.04 By element: Atomic # 1 Polarization: 9.06 SS G_CDS: -4.86 Total: 4.21 kcal Atomic # 6 Polarization: -2.08 SS G_CDS: -1.72 Total: -3.80 kcal Atomic # 7 Polarization: -45.55 SS G_CDS: 0.30 Total: -45.25 kcal Atomic # 8 Polarization: -13.19 SS G_CDS: 0.09 Total: -13.11 kcal Atomic # 14 Polarization: 20.62 SS G_CDS: -5.02 Total: 15.59 kcal Atomic # 16 Polarization: -2.39 SS G_CDS: -2.24 Total: -4.63 kcal Total LS contribution 4.94 Total: 4.94 kcal Total: -33.53 -8.51 -42.04 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000194636939.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.779 kcal (2) G-P(sol) polarization free energy of solvation -33.529 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.249 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.514 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.043 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.265 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds