Wall clock time and date at job start Fri Apr 10 2020 17:16:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09004 * 109.46961 * 2 1 4 4 C 1.50697 * 109.47217 * 239.99523 * 2 1 3 5 5 H 1.08001 * 120.00040 * 245.46302 * 4 2 1 6 6 C 1.37877 * 120.00057 * 65.46521 * 4 2 1 7 7 N 1.31519 * 119.99869 * 9.55495 * 6 4 2 8 8 Si 1.86794 * 119.99998 * 189.55849 * 6 4 2 9 9 H 1.48504 * 109.47413 * 84.99254 * 8 6 4 10 10 H 1.48504 * 109.47330 * 204.99188 * 8 6 4 11 11 H 1.48498 * 109.47435 * 324.99361 * 8 6 4 12 12 N 1.46502 * 109.46937 * 119.99805 * 2 1 3 13 13 C 1.34780 * 119.99847 * 275.00212 * 12 2 1 14 14 O 1.21284 * 120.00075 * 359.97438 * 13 12 2 15 15 C 1.50697 * 120.00212 * 180.02562 * 13 12 2 16 16 S 1.81391 * 109.47535 * 179.97438 * 15 13 12 17 17 C 1.81396 * 103.00338 * 179.97438 * 16 15 13 18 18 C 1.50697 * 109.47387 * 180.02562 * 17 16 15 19 19 C 1.38231 * 119.62219 * 90.00114 * 18 17 16 20 20 C 1.38630 * 119.16140 * 179.97438 * 19 18 17 21 21 C 1.38673 * 118.41984 * 359.97438 * 20 19 18 22 22 C 1.38180 * 119.16212 * 0.02562 * 21 20 19 23 23 N 1.31855 * 119.61823 * 269.72346 * 18 17 16 24 24 H 1.08996 * 109.47156 * 183.67881 * 1 2 3 25 25 H 1.08996 * 109.46715 * 303.68529 * 1 2 3 26 26 H 1.09005 * 109.46844 * 63.68135 * 1 2 3 27 27 H 0.96999 * 120.00039 * 180.02562 * 7 6 4 28 28 H 0.96992 * 120.00532 * 95.00002 * 12 2 1 29 29 H 1.09000 * 109.47027 * 299.99913 * 15 13 12 30 30 H 1.08999 * 109.47130 * 59.99264 * 15 13 12 31 31 H 1.09001 * 109.46912 * 299.99988 * 17 16 15 32 32 H 1.09000 * 109.47432 * 59.99792 * 17 16 15 33 33 H 1.08000 * 120.41759 * 359.95257 * 19 18 17 34 34 H 1.08000 * 120.78467 * 180.02562 * 20 19 18 35 35 H 1.07997 * 120.41621 * 180.02562 * 21 20 19 36 36 H 1.08005 * 119.61047 * 180.02562 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7105 -1.2304 5 1 2.5786 -1.6372 -1.1337 6 6 1.7947 -0.1775 -2.4796 7 7 1.2994 1.0355 -2.5936 8 14 2.1761 -1.1783 -4.0100 9 1 1.0241 -2.0613 -4.3239 10 1 2.4229 -0.2618 -5.1521 11 1 3.3845 -2.0076 -3.7708 12 7 2.0183 -0.6906 1.1962 13 6 2.1470 -0.0182 2.3572 14 8 1.8589 1.1587 2.4115 15 6 2.6498 -0.7283 3.5876 16 16 2.7113 0.4374 4.9760 17 6 3.3287 -0.5856 6.3408 18 6 3.4369 0.2531 7.5881 19 6 2.3573 0.3430 8.4467 20 6 2.4675 1.1168 9.5917 21 6 3.6650 1.7736 9.8317 22 6 4.7011 1.6365 8.9278 23 7 4.5622 0.8882 7.8508 24 1 -0.3633 -1.0255 0.0659 25 1 -0.3632 0.5700 0.8551 26 1 -0.3633 0.4557 -0.9212 27 1 1.1319 1.4103 -3.4724 28 1 2.2490 -1.6317 1.1528 29 1 1.9776 -1.5506 3.8327 30 1 3.6491 -1.1202 3.3980 31 1 2.6389 -1.4109 6.5170 32 1 4.3108 -0.9817 6.0825 33 1 1.4395 -0.1825 8.2281 34 1 1.6406 1.2051 10.2808 35 1 3.7862 2.3846 10.7140 36 1 5.6370 2.1445 9.1078 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000194636939.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:16:28 Heat of formation + Delta-G solvation = -30.076651 kcal Electronic energy + Delta-G solvation = -18176.247403 eV Core-core repulsion = 15171.507227 eV Total energy + Delta-G solvation = -3004.740176 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 280.099 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.05954 -40.50569 -36.72579 -34.36848 -33.99396 -33.23863 -32.02175 -29.78929 -28.64157 -27.30620 -24.43617 -23.47641 -22.96852 -21.28217 -19.10381 -17.94218 -17.56838 -17.43244 -17.20264 -16.87919 -16.43219 -16.36133 -15.89684 -15.28056 -14.81753 -14.53087 -14.38323 -14.26419 -13.99521 -13.82627 -13.58430 -13.38364 -12.94190 -12.88453 -12.68276 -12.55537 -12.36212 -12.14037 -11.17572 -11.06483 -10.85800 -10.78959 -10.57953 -10.40461 -9.87291 -9.82069 -8.67727 -8.21330 -6.35284 -0.17457 0.34915 0.76878 1.45063 1.46248 1.56010 1.58391 1.72463 2.35106 2.59469 2.94057 3.11120 3.24026 3.71215 3.91403 4.02197 4.12892 4.16024 4.23672 4.30646 4.39993 4.44420 4.71679 4.74900 4.85265 4.87387 5.02233 5.20804 5.27626 5.39938 5.57981 5.61275 5.78377 5.86348 6.01342 6.73138 6.88541 7.03755 7.30796 7.50382 8.88142 Molecular weight = 280.10amu Principal moments of inertia in cm(-1) A = 0.051428 B = 0.002718 C = 0.002691 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 544.321133 B =10300.507291 C =10400.891358 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C 0.269 3.731 3 H 0.000 1.000 4 C -0.548 4.548 5 H 0.077 0.923 6 C 0.014 3.986 7 N -0.921 5.921 8 Si 0.972 3.028 9 H -0.269 1.269 10 H -0.289 1.289 11 H -0.262 1.262 12 N -0.698 5.698 13 C 0.511 3.489 14 O -0.586 6.586 15 C -0.107 4.107 16 S -0.233 6.233 17 C -0.042 4.042 18 C 0.118 3.882 19 C -0.161 4.161 20 C -0.079 4.079 21 C -0.167 4.167 22 C 0.082 3.918 23 N -0.508 5.508 24 H 0.051 0.949 25 H 0.015 0.985 26 H 0.048 0.952 27 H 0.266 0.734 28 H 0.409 0.591 29 H 0.144 0.856 30 H 0.133 0.867 31 H 0.125 0.875 32 H 0.101 0.899 33 H 0.153 0.847 34 H 0.166 0.834 35 H 0.167 0.833 36 H 0.175 0.825 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.337 -7.029 24.376 25.588 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C 0.165 3.835 3 H 0.018 0.982 4 C -0.586 4.586 5 H 0.095 0.905 6 C -0.186 4.186 7 N -0.559 5.559 8 Si 0.796 3.204 9 H -0.194 1.194 10 H -0.215 1.215 11 H -0.186 1.186 12 N -0.348 5.348 13 C 0.296 3.704 14 O -0.467 6.467 15 C -0.257 4.257 16 S -0.007 6.007 17 C -0.190 4.190 18 C -0.020 4.020 19 C -0.182 4.182 20 C -0.104 4.104 21 C -0.187 4.187 22 C -0.075 4.075 23 N -0.218 5.218 24 H 0.071 0.929 25 H 0.034 0.966 26 H 0.067 0.933 27 H 0.074 0.926 28 H 0.244 0.756 29 H 0.162 0.838 30 H 0.151 0.849 31 H 0.143 0.857 32 H 0.120 0.880 33 H 0.171 0.829 34 H 0.184 0.816 35 H 0.185 0.815 36 H 0.192 0.808 Dipole moment (debyes) X Y Z Total from point charges 3.504 -5.114 23.636 24.435 hybrid contribution -0.146 -1.446 -0.664 1.597 sum 3.358 -6.559 22.972 24.125 Atomic orbital electron populations 1.21839 0.98244 0.99549 0.99074 1.18375 0.91008 0.92259 0.81836 0.98204 1.21516 1.37229 1.09075 0.90773 0.90496 1.25846 0.94755 0.95473 1.02548 1.70146 1.45098 1.15611 1.25002 0.85364 0.79061 0.78230 0.77724 1.19386 1.21519 1.18614 1.46150 1.65142 1.14347 1.09183 1.20398 0.77908 0.86945 0.85116 1.90694 1.52462 1.18136 1.85451 1.23460 1.07984 1.01310 0.92990 1.88101 1.86905 1.20389 1.05263 1.22306 1.06066 0.98863 0.91788 1.20521 0.90382 0.96282 0.94821 1.22243 0.99677 1.00807 0.95492 1.22037 0.98639 0.93432 0.96325 1.22558 0.93857 1.00647 1.01651 1.23219 1.00484 0.94567 0.89218 1.67383 1.25843 1.07995 1.20617 0.92948 0.96589 0.93255 0.92556 0.75555 0.83809 0.84859 0.85665 0.88007 0.82887 0.81615 0.81549 0.80799 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -6.40 9.36 71.98 0.67 -5.73 16 2 C 0.27 14.00 2.42 44.24 0.11 14.11 16 3 H 0.00 0.00 7.52 -2.39 -0.02 -0.02 16 4 C -0.55 -28.90 8.66 25.60 0.22 -28.68 16 5 H 0.08 3.73 7.74 -2.91 -0.02 3.71 16 6 C 0.01 0.76 5.17 84.65 0.44 1.20 16 7 N -0.92 -54.08 12.16 21.45 0.26 -53.82 16 8 Si 0.97 41.95 29.55 68.60 2.03 43.98 16 9 H -0.27 -11.13 7.11 99.48 0.71 -10.42 16 10 H -0.29 -12.56 7.11 99.48 0.71 -11.85 16 11 H -0.26 -10.71 7.11 99.48 0.71 -10.01 16 12 N -0.70 -28.45 5.07 -446.08 -2.26 -30.71 16 13 C 0.51 20.51 7.81 87.66 0.68 21.20 16 14 O -0.59 -30.08 15.53 -3.04 -0.05 -30.13 16 15 C -0.11 -2.86 6.42 71.23 0.46 -2.40 16 16 S -0.23 -7.08 20.86 -56.49 -1.18 -8.26 16 17 C -0.04 -0.87 6.23 71.23 0.44 -0.42 16 18 C 0.12 2.61 6.04 42.55 0.26 2.86 16 19 C -0.16 -2.76 9.74 22.36 0.22 -2.54 16 20 C -0.08 -1.04 10.18 22.47 0.23 -0.82 16 21 C -0.17 -2.18 10.11 22.36 0.23 -1.96 16 22 C 0.08 1.48 11.18 84.67 0.95 2.43 16 23 N -0.51 -12.37 10.27 -183.89 -1.89 -14.26 16 24 H 0.05 2.31 8.14 -2.39 -0.02 2.29 16 25 H 0.01 0.76 8.14 -2.39 -0.02 0.74 16 26 H 0.05 2.68 6.83 -2.38 -0.02 2.66 16 27 H 0.27 14.74 8.31 -92.71 -0.77 13.97 16 28 H 0.41 13.31 8.53 -92.71 -0.79 12.52 16 29 H 0.14 2.74 8.14 -2.39 -0.02 2.72 16 30 H 0.13 2.88 8.14 -2.39 -0.02 2.86 16 31 H 0.13 1.76 8.08 -2.39 -0.02 1.74 16 32 H 0.10 2.00 8.14 -2.39 -0.02 1.98 16 33 H 0.15 2.01 8.06 -2.91 -0.02 1.98 16 34 H 0.17 1.11 8.06 -2.91 -0.02 1.09 16 35 H 0.17 1.03 8.06 -2.91 -0.02 1.00 16 36 H 0.17 2.21 8.06 -2.91 -0.02 2.18 16 Total: -1.00 -76.88 328.03 2.11 -74.77 By element: Atomic # 1 Polarization: 18.87 SS G_CDS: 0.29 Total: 19.16 kcal Atomic # 6 Polarization: -5.65 SS G_CDS: 4.90 Total: -0.74 kcal Atomic # 7 Polarization: -94.89 SS G_CDS: -3.89 Total: -98.78 kcal Atomic # 8 Polarization: -30.08 SS G_CDS: -0.05 Total: -30.13 kcal Atomic # 14 Polarization: 41.95 SS G_CDS: 2.03 Total: 43.98 kcal Atomic # 16 Polarization: -7.08 SS G_CDS: -1.18 Total: -8.26 kcal Total: -76.88 2.11 -74.77 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000194636939.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.696 kcal (2) G-P(sol) polarization free energy of solvation -76.880 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.184 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.108 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.772 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.077 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds