Wall clock time and date at job start Fri Apr 10 2020 17:16:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09001 * 109.47002 * 2 1 4 4 C 1.50697 * 109.47239 * 119.99930 * 2 1 3 5 5 H 1.08002 * 119.99362 * 119.99715 * 4 2 1 6 6 C 1.37867 * 120.00258 * 300.00370 * 4 2 1 7 7 N 1.31511 * 120.00203 * 359.97438 * 6 4 2 8 8 Si 1.86805 * 120.00057 * 179.97438 * 6 4 2 9 9 H 1.48496 * 109.46873 * 60.00018 * 8 6 4 10 10 H 1.48503 * 109.47134 * 179.97438 * 8 6 4 11 11 H 1.48494 * 109.47271 * 299.99819 * 8 6 4 12 12 N 1.46504 * 109.46883 * 240.00503 * 2 1 3 13 13 C 1.34773 * 120.00111 * 84.99828 * 12 2 1 14 14 O 1.21277 * 120.00090 * 0.02562 * 13 12 2 15 15 C 1.50703 * 119.99847 * 179.97438 * 13 12 2 16 16 S 1.81400 * 109.47051 * 180.02562 * 15 13 12 17 17 C 1.81399 * 102.99930 * 179.97438 * 16 15 13 18 18 C 1.50705 * 109.47112 * 179.97438 * 17 16 15 19 19 C 1.38649 * 120.78805 * 269.72035 * 18 17 16 20 20 C 1.38203 * 119.15850 * 179.79678 * 19 18 17 21 21 N 1.31871 * 120.76521 * 0.49017 * 20 19 18 22 22 C 1.31870 * 121.72477 * 359.73600 * 21 20 19 23 23 C 1.38205 * 120.76537 * 0.02649 * 22 21 20 24 24 H 1.09000 * 109.47050 * 299.99734 * 1 2 3 25 25 H 1.09001 * 109.46801 * 59.99846 * 1 2 3 26 26 H 1.09001 * 109.46998 * 179.97438 * 1 2 3 27 27 H 0.97006 * 120.00645 * 180.02562 * 7 6 4 28 28 H 0.97003 * 119.99624 * 264.99510 * 12 2 1 29 29 H 1.08999 * 109.46659 * 299.99752 * 15 13 12 30 30 H 1.08988 * 109.47257 * 59.99966 * 15 13 12 31 31 H 1.08998 * 109.47162 * 300.00019 * 17 16 15 32 32 H 1.09006 * 109.47079 * 59.99894 * 17 16 15 33 33 H 1.08004 * 120.42179 * 0.02562 * 19 18 17 34 34 H 1.08007 * 119.62004 * 180.20647 * 20 19 18 35 35 H 1.08000 * 119.61546 * 180.02562 * 22 21 20 36 36 H 1.07996 * 120.41457 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7104 1.2304 5 1 2.6533 -1.5885 1.1312 6 6 1.6993 -0.2394 2.4826 7 7 0.9436 0.8301 2.6034 8 14 2.3215 -1.1205 4.0079 9 1 3.8065 -1.1209 4.0080 10 1 1.8271 -0.4201 5.2204 11 1 1.8260 -2.5203 4.0076 12 7 2.0184 -0.6905 -1.1963 13 6 2.1470 -0.0181 -2.3572 14 8 1.8590 1.1587 -2.4115 15 6 2.6499 -0.7284 -3.5876 16 16 2.7114 0.4375 -4.9760 17 6 3.3303 -0.5852 -6.3404 18 6 3.4387 0.2535 -7.5878 19 6 2.3733 0.3554 -8.4692 20 6 2.5080 1.1373 -9.6008 21 7 3.6357 1.7736 -9.8508 22 6 4.6707 1.6959 -9.0373 23 6 4.6081 0.9369 -7.8840 24 1 -0.3633 0.5138 0.8900 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 0.7095 1.1617 3.4844 28 1 2.2491 -1.6317 -1.1527 29 1 3.6492 -1.1201 -3.3980 30 1 1.9777 -1.5506 -3.8326 31 1 4.3125 -0.9807 -6.0815 32 1 2.6412 -1.4111 -6.5170 33 1 1.4486 -0.1666 -8.2721 34 1 1.6817 1.2247 -10.2908 35 1 5.5778 2.2315 -9.2752 36 1 5.4593 0.8769 -7.2221 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000194636955.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:16:31 Heat of formation + Delta-G solvation = -30.114702 kcal Electronic energy + Delta-G solvation = -18172.969830 eV Core-core repulsion = 15168.228004 eV Total energy + Delta-G solvation = -3004.741826 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 280.099 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -41.03516 -40.51383 -36.75347 -34.95873 -34.37478 -32.12538 -31.98042 -29.77263 -28.83113 -27.34722 -24.39996 -23.47102 -22.95919 -21.27834 -19.11151 -17.91575 -17.58157 -17.37304 -17.20132 -16.82965 -16.49385 -16.43956 -15.90347 -15.16117 -14.82259 -14.71579 -14.46863 -14.25256 -14.21562 -13.81504 -13.52975 -13.41652 -12.94641 -12.84047 -12.71598 -12.44657 -12.27786 -12.16236 -11.19977 -11.12947 -10.88974 -10.59831 -10.46786 -10.35809 -10.07861 -9.81587 -8.69989 -8.18288 -6.36474 -0.15807 0.21744 0.82536 1.45296 1.47330 1.55229 1.59964 1.72133 2.34558 2.59814 2.92391 3.12270 3.48030 3.62758 3.74925 3.90773 4.12637 4.15445 4.22537 4.30583 4.35067 4.52246 4.73419 4.73621 4.90448 4.90903 5.00634 5.07551 5.33003 5.40966 5.57979 5.66136 5.77056 5.87497 6.07962 6.71082 6.88217 7.02523 7.30677 7.50070 8.87917 Molecular weight = 280.10amu Principal moments of inertia in cm(-1) A = 0.051108 B = 0.002704 C = 0.002667 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 547.732089 B =10350.966927 C =10494.758789 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C 0.272 3.728 3 H -0.004 1.004 4 C -0.548 4.548 5 H 0.077 0.923 6 C 0.013 3.987 7 N -0.919 5.919 8 Si 0.974 3.026 9 H -0.270 1.270 10 H -0.288 1.288 11 H -0.262 1.262 12 N -0.699 5.699 13 C 0.509 3.491 14 O -0.587 6.587 15 C -0.107 4.107 16 S -0.236 6.236 17 C -0.053 4.053 18 C -0.038 4.038 19 C -0.160 4.160 20 C 0.086 3.914 21 N -0.513 5.513 22 C 0.086 3.914 23 C -0.160 4.160 24 H 0.066 0.934 25 H 0.010 0.990 26 H 0.043 0.957 27 H 0.266 0.734 28 H 0.409 0.591 29 H 0.138 0.862 30 H 0.140 0.860 31 H 0.115 0.885 32 H 0.115 0.885 33 H 0.154 0.846 34 H 0.177 0.823 35 H 0.177 0.823 36 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.300 -8.230 -20.296 22.789 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C 0.168 3.832 3 H 0.014 0.986 4 C -0.586 4.586 5 H 0.095 0.905 6 C -0.187 4.187 7 N -0.557 5.557 8 Si 0.798 3.202 9 H -0.195 1.195 10 H -0.214 1.214 11 H -0.187 1.187 12 N -0.349 5.349 13 C 0.295 3.705 14 O -0.468 6.468 15 C -0.258 4.258 16 S -0.008 6.008 17 C -0.200 4.200 18 C -0.047 4.047 19 C -0.181 4.181 20 C -0.070 4.070 21 N -0.223 5.223 22 C -0.070 4.070 23 C -0.182 4.182 24 H 0.084 0.916 25 H 0.030 0.970 26 H 0.062 0.938 27 H 0.075 0.925 28 H 0.244 0.756 29 H 0.156 0.844 30 H 0.158 0.842 31 H 0.133 0.867 32 H 0.134 0.866 33 H 0.172 0.828 34 H 0.194 0.806 35 H 0.194 0.806 36 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges 5.791 -5.736 -20.886 22.420 hybrid contribution 0.350 -2.018 1.882 2.781 sum 6.142 -7.754 -19.004 21.424 Atomic orbital electron populations 1.21907 0.98303 0.99585 0.99529 1.18344 0.91113 0.91877 0.81849 0.98570 1.21517 1.32717 1.13677 0.90656 0.90532 1.25832 0.94854 0.95576 1.02457 1.70053 1.36972 1.23953 1.24719 0.85371 0.78646 0.78722 0.77436 1.19524 1.21366 1.18688 1.46168 1.65106 1.14351 1.09262 1.20442 0.77940 0.86972 0.85139 1.90695 1.52475 1.18182 1.85443 1.23467 1.08099 1.01256 0.92980 1.88199 1.87573 1.19947 1.05106 1.22451 1.06568 0.99151 0.91870 1.19807 0.94403 0.96375 0.94158 1.22328 0.99895 1.00596 0.95292 1.23167 0.95591 0.92203 0.96048 1.67691 1.01205 1.20915 1.32482 1.23159 0.97555 0.95904 0.90395 1.22326 0.99215 0.97673 0.98960 0.91551 0.97050 0.93808 0.92536 0.75575 0.84421 0.84210 0.86709 0.86621 0.82829 0.80602 0.80644 0.82918 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -6.78 9.26 71.98 0.67 -6.11 16 2 C 0.27 13.92 2.56 44.25 0.11 14.03 16 3 H 0.00 -0.22 7.58 -2.39 -0.02 -0.24 16 4 C -0.55 -28.38 8.73 25.60 0.22 -28.15 16 5 H 0.08 3.63 7.74 -2.91 -0.02 3.61 16 6 C 0.01 0.68 5.30 84.65 0.45 1.13 16 7 N -0.92 -52.61 11.32 21.44 0.24 -52.37 16 8 Si 0.97 41.26 29.54 68.60 2.03 43.28 16 9 H -0.27 -11.11 7.11 99.48 0.71 -10.41 16 10 H -0.29 -12.23 7.11 99.48 0.71 -11.52 16 11 H -0.26 -10.48 7.11 99.48 0.71 -9.77 16 12 N -0.70 -27.60 5.07 -446.09 -2.26 -29.86 16 13 C 0.51 19.53 7.81 87.66 0.68 20.21 16 14 O -0.59 -29.04 15.53 -3.02 -0.05 -29.08 16 15 C -0.11 -2.59 6.42 71.24 0.46 -2.14 16 16 S -0.24 -6.28 20.86 -56.49 -1.18 -7.46 16 17 C -0.05 -0.82 6.12 71.24 0.44 -0.38 16 18 C -0.04 -0.66 5.18 -19.67 -0.10 -0.76 16 19 C -0.16 -2.65 9.82 22.36 0.22 -2.43 16 20 C 0.09 1.52 11.18 84.68 0.95 2.47 16 21 N -0.51 -10.77 10.36 -195.84 -2.03 -12.80 16 22 C 0.09 1.53 11.18 84.68 0.95 2.48 16 23 C -0.16 -2.69 9.82 22.36 0.22 -2.47 16 24 H 0.07 3.68 6.07 -2.39 -0.01 3.67 16 25 H 0.01 0.53 8.14 -2.39 -0.02 0.51 16 26 H 0.04 2.00 8.14 -2.39 -0.02 1.98 16 27 H 0.27 14.43 8.31 -92.70 -0.77 13.66 16 28 H 0.41 12.85 8.54 -92.71 -0.79 12.06 16 29 H 0.14 2.48 8.14 -2.39 -0.02 2.46 16 30 H 0.14 2.44 8.14 -2.40 -0.02 2.42 16 31 H 0.11 1.31 8.10 -2.39 -0.02 1.29 16 32 H 0.12 1.30 8.10 -2.39 -0.02 1.28 16 33 H 0.15 1.93 8.06 -2.91 -0.02 1.91 16 34 H 0.18 2.14 8.06 -2.91 -0.02 2.12 16 35 H 0.18 2.17 8.06 -2.91 -0.02 2.15 16 36 H 0.15 1.98 8.06 -2.91 -0.02 1.96 16 Total: -1.00 -73.60 326.62 2.31 -71.29 By element: Atomic # 1 Polarization: 18.84 SS G_CDS: 0.29 Total: 19.13 kcal Atomic # 6 Polarization: -7.39 SS G_CDS: 5.26 Total: -2.13 kcal Atomic # 7 Polarization: -90.98 SS G_CDS: -4.05 Total: -95.03 kcal Atomic # 8 Polarization: -29.04 SS G_CDS: -0.05 Total: -29.08 kcal Atomic # 14 Polarization: 41.26 SS G_CDS: 2.03 Total: 43.28 kcal Atomic # 16 Polarization: -6.28 SS G_CDS: -1.18 Total: -7.46 kcal Total: -73.60 2.31 -71.29 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000194636955.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.177 kcal (2) G-P(sol) polarization free energy of solvation -73.600 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.423 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.308 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.292 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.115 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds