Wall clock time and date at job start Fri Apr 10 2020 17:15:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.38272 * 119.97573 * 2 1 4 4 C 1.38174 * 120.02453 * 180.30113 * 3 2 1 5 5 C 1.38479 * 119.97385 * 359.44151 * 4 3 2 6 6 F 1.35104 * 120.02409 * 180.25952 * 5 4 3 7 7 C 1.38434 * 119.94982 * 0.55711 * 5 4 3 8 8 C 1.38222 * 119.97488 * 359.72001 * 7 5 4 9 9 C 1.50700 * 119.98622 * 179.97438 * 8 7 5 10 10 H 1.09005 * 109.46512 * 215.02264 * 9 8 7 11 11 C 1.52997 * 109.47261 * 95.02801 * 9 8 7 12 12 O 1.45201 * 109.47270 * 335.02245 * 9 8 7 13 13 C 1.34231 * 116.99857 * 210.00211 * 12 9 8 14 14 O 1.20828 * 120.00188 * 0.02562 * 13 12 9 15 15 C 1.50699 * 119.99896 * 179.97438 * 13 12 9 16 16 H 1.09003 * 109.46948 * 60.00317 * 15 13 12 17 17 C 1.52997 * 109.47328 * 300.00666 * 15 13 12 18 18 C 1.50701 * 109.47306 * 179.97438 * 15 13 12 19 19 H 1.08002 * 119.99415 * 0.02562 * 18 15 13 20 20 C 1.37873 * 120.00307 * 180.02562 * 18 15 13 21 21 N 1.31516 * 119.99870 * 0.02562 * 20 18 15 22 22 Si 1.86796 * 120.00353 * 180.02562 * 20 18 15 23 23 H 1.48503 * 109.46976 * 59.99821 * 22 20 18 24 24 H 1.48499 * 109.47261 * 180.02562 * 22 20 18 25 25 H 1.48503 * 109.47215 * 300.00516 * 22 20 18 26 26 H 1.09002 * 109.47290 * 90.00512 * 1 2 3 27 27 H 1.09002 * 109.47376 * 210.00360 * 1 2 3 28 28 H 1.09005 * 109.47379 * 330.00452 * 1 2 3 29 29 H 1.08002 * 119.98328 * 0.02562 * 3 2 1 30 30 H 1.08004 * 120.00935 * 179.72217 * 4 3 2 31 31 H 1.08000 * 120.01360 * 179.70366 * 7 5 4 32 32 H 1.08997 * 109.47702 * 59.99466 * 11 9 8 33 33 H 1.09004 * 109.47220 * 180.02562 * 11 9 8 34 34 H 1.09005 * 109.46919 * 299.99214 * 11 9 8 35 35 H 1.09001 * 109.46790 * 179.97438 * 17 15 13 36 36 H 1.08996 * 109.46931 * 299.99328 * 17 15 13 37 37 H 1.08992 * 109.47387 * 59.99455 * 17 15 13 38 38 H 0.96997 * 120.00041 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1978 1.1978 0.0000 4 6 3.5795 1.1989 -0.0063 5 6 4.2724 0.0000 -0.0009 6 9 5.6235 0.0000 -0.0017 7 6 3.5797 -1.1986 -0.0009 8 6 2.1975 -1.1974 -0.0004 9 6 1.4432 -2.5020 -0.0009 10 1 0.5325 -2.3948 -0.5904 11 6 1.0790 -2.8811 1.4358 12 8 2.2750 -3.5418 -0.5800 13 6 1.6455 -4.5402 -1.2193 14 8 0.4395 -4.5449 -1.2931 15 6 2.4431 -5.6547 -1.8460 16 1 3.0265 -6.1610 -1.0770 17 6 3.3859 -5.0754 -2.9026 18 6 1.5055 -6.6402 -2.4947 19 1 0.4388 -6.4757 -2.4571 20 6 2.0095 -7.7518 -3.1359 21 7 3.3085 -7.9524 -3.1812 22 14 0.8474 -8.9731 -3.9406 23 1 0.0530 -8.2836 -4.9888 24 1 1.6333 -10.0720 -4.5570 25 1 -0.0681 -9.5347 -2.9151 26 1 -0.3634 -0.0001 -1.0277 27 1 -0.3634 -0.8900 0.5139 28 1 -0.3634 0.8900 0.5138 29 1 1.6571 2.1327 0.0004 30 1 4.1189 2.1347 -0.0108 31 1 4.1191 -2.1342 -0.0015 32 1 0.4546 -2.1006 1.8705 33 1 0.5337 -3.8250 1.4355 34 1 1.9896 -2.9883 2.0253 35 1 3.9631 -5.8816 -3.3556 36 1 2.8025 -4.5693 -3.6717 37 1 4.0640 -4.3629 -2.4331 38 1 3.6631 -8.7346 -3.6320 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001435762650.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:15:43 Heat of formation + Delta-G solvation = -124.956936 kcal Electronic energy + Delta-G solvation = -21820.178216 eV Core-core repulsion = 18348.650889 eV Total energy + Delta-G solvation = -3471.527327 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 280.126 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -48.86684 -40.20620 -39.07331 -36.00098 -33.91140 -33.26615 -32.11011 -30.56863 -29.50315 -26.78570 -25.21567 -24.42242 -23.30010 -21.90227 -20.72561 -19.66375 -17.52281 -17.01929 -16.31513 -15.90690 -15.67411 -15.62702 -15.43402 -15.14403 -14.53507 -13.92686 -13.84939 -13.76093 -13.53900 -13.10439 -12.85820 -12.42463 -12.22429 -12.07552 -11.81288 -11.72114 -11.63270 -11.19131 -11.02963 -10.85789 -10.70898 -10.69322 -10.37099 -10.16628 -10.06541 -9.15734 -9.06716 -9.01572 -8.54314 -8.45443 -6.11181 -4.16922 1.01451 1.13649 3.25223 3.31376 3.32303 3.34975 3.41276 3.51772 4.16993 4.39927 4.52425 4.65051 4.87984 4.94378 5.10529 5.19399 5.21990 5.28153 5.45492 5.51848 5.54608 5.69397 5.76096 5.87300 5.98295 6.06858 6.11016 6.20347 6.24000 6.49892 6.65704 6.81826 6.85956 6.87894 7.20420 7.42521 7.73306 7.93342 8.12992 8.81489 8.91967 9.48650 10.96164 Molecular weight = 280.13amu Principal moments of inertia in cm(-1) A = 0.024789 B = 0.004276 C = 0.003854 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1129.256402 B = 6545.997754 C = 7264.119563 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.087 4.087 3 C -0.095 4.095 4 C -0.153 4.153 5 C 0.090 3.910 6 F -0.141 7.141 7 C -0.122 4.122 8 C -0.053 4.053 9 C 0.118 3.882 10 H 0.095 0.905 11 C -0.163 4.163 12 O -0.358 6.358 13 C 0.467 3.533 14 O -0.516 6.516 15 C 0.058 3.942 16 H 0.064 0.936 17 C -0.133 4.133 18 C -0.514 4.514 19 H 0.075 0.925 20 C 0.062 3.938 21 N -0.892 5.892 22 Si 0.905 3.095 23 H -0.275 1.275 24 H -0.286 1.286 25 H -0.275 1.275 26 H 0.075 0.925 27 H 0.073 0.927 28 H 0.070 0.930 29 H 0.133 0.867 30 H 0.133 0.867 31 H 0.147 0.853 32 H 0.071 0.929 33 H 0.070 0.930 34 H 0.066 0.934 35 H 0.096 0.904 36 H 0.031 0.969 37 H 0.023 0.977 38 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.995 16.887 7.736 18.601 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.088 4.088 3 C -0.113 4.113 4 C -0.171 4.171 5 C 0.071 3.929 6 F -0.119 7.119 7 C -0.141 4.141 8 C -0.054 4.054 9 C 0.063 3.937 10 H 0.113 0.887 11 C -0.220 4.220 12 O -0.277 6.277 13 C 0.312 3.688 14 O -0.403 6.403 15 C 0.039 3.961 16 H 0.082 0.918 17 C -0.191 4.191 18 C -0.552 4.552 19 H 0.093 0.907 20 C -0.139 4.139 21 N -0.530 5.530 22 Si 0.733 3.267 23 H -0.201 1.201 24 H -0.212 1.212 25 H -0.201 1.201 26 H 0.094 0.906 27 H 0.092 0.908 28 H 0.089 0.911 29 H 0.150 0.850 30 H 0.151 0.849 31 H 0.165 0.835 32 H 0.090 0.910 33 H 0.089 0.911 34 H 0.085 0.915 35 H 0.114 0.886 36 H 0.050 0.950 37 H 0.042 0.958 38 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -1.189 16.769 7.656 18.473 hybrid contribution -0.321 -0.574 -0.437 0.790 sum -1.510 16.195 7.219 17.795 Atomic orbital electron populations 1.20923 0.90664 1.03260 1.03058 1.19731 0.96530 0.92018 1.00496 1.20785 0.92989 0.97620 0.99867 1.21107 0.94983 0.96992 1.04058 1.17691 0.76925 0.94526 1.03779 1.91499 1.28994 1.97424 1.93995 1.21099 0.94348 0.97817 1.00830 1.19443 0.92992 0.93643 0.99278 1.21244 0.93516 0.83723 0.95218 0.88686 1.22165 1.02429 1.02650 0.94734 1.86677 1.41626 1.33288 1.66085 1.25387 0.88591 0.81482 0.73381 1.90482 1.16595 1.76112 1.57064 1.18761 0.94546 0.87590 0.95166 0.91816 1.21731 0.98566 1.00400 0.98421 1.21083 0.93684 1.05450 1.34935 0.90692 1.24932 0.95352 0.97737 0.95922 1.69869 1.11159 1.28486 1.43501 0.86436 0.80510 0.80189 0.79605 1.20091 1.21206 1.20087 0.90590 0.90846 0.91146 0.84959 0.84883 0.83539 0.91032 0.91120 0.91469 0.88553 0.95012 0.95809 0.92620 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.15 9.21 36.00 0.33 -0.82 16 2 C -0.09 -1.01 5.88 -104.62 -0.62 -1.62 16 3 C -0.09 -0.95 9.70 -39.59 -0.38 -1.33 16 4 C -0.15 -1.65 10.03 -39.52 -0.40 -2.05 16 5 C 0.09 1.19 7.30 -39.42 -0.29 0.90 16 6 F -0.14 -1.95 17.27 2.25 0.04 -1.91 16 7 C -0.12 -1.76 9.33 -39.52 -0.37 -2.13 16 8 C -0.05 -0.74 5.07 -104.63 -0.53 -1.27 16 9 C 0.12 1.87 2.08 -27.88 -0.06 1.82 16 10 H 0.10 1.57 6.00 -51.93 -0.31 1.26 16 11 C -0.16 -2.20 9.34 37.16 0.35 -1.86 16 12 O -0.36 -6.99 8.61 -39.26 -0.34 -7.33 16 13 C 0.47 10.78 7.22 36.01 0.26 11.04 16 14 O -0.52 -12.76 14.68 -18.75 -0.28 -13.03 16 15 C 0.06 1.47 2.74 -92.93 -0.25 1.22 16 16 H 0.06 1.66 8.14 -51.93 -0.42 1.24 16 17 C -0.13 -3.17 8.90 37.16 0.33 -2.84 16 18 C -0.51 -14.31 8.37 -34.44 -0.29 -14.60 16 19 H 0.07 2.17 6.76 -52.49 -0.35 1.81 16 20 C 0.06 1.70 5.30 -17.82 -0.09 1.61 16 21 N -0.89 -24.75 11.32 55.43 0.63 -24.12 16 22 Si 0.91 21.39 29.54 -169.99 -5.02 16.37 16 23 H -0.28 -6.49 7.11 56.52 0.40 -6.08 16 24 H -0.29 -6.62 7.11 56.52 0.40 -6.22 16 25 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 26 H 0.08 0.71 8.14 -51.93 -0.42 0.29 16 27 H 0.07 0.71 5.42 -51.93 -0.28 0.43 16 28 H 0.07 0.50 8.09 -51.93 -0.42 0.08 16 29 H 0.13 0.94 8.06 -52.49 -0.42 0.51 16 30 H 0.13 1.13 8.06 -52.48 -0.42 0.70 16 31 H 0.15 2.22 7.34 -52.49 -0.39 1.83 16 32 H 0.07 0.78 6.91 -51.93 -0.36 0.42 16 33 H 0.07 1.05 8.14 -51.93 -0.42 0.63 16 34 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 35 H 0.10 2.47 6.07 -51.93 -0.32 2.15 16 36 H 0.03 0.74 8.14 -51.93 -0.42 0.31 16 37 H 0.02 0.49 8.11 -51.93 -0.42 0.07 16 38 H 0.26 6.98 8.31 -40.82 -0.34 6.65 16 LS Contribution 323.06 15.07 4.87 4.87 Total: -1.00 -29.60 323.06 -7.05 -36.65 By element: Atomic # 1 Polarization: 5.40 SS G_CDS: -4.94 Total: 0.46 kcal Atomic # 6 Polarization: -9.93 SS G_CDS: -2.01 Total: -11.94 kcal Atomic # 7 Polarization: -24.75 SS G_CDS: 0.63 Total: -24.12 kcal Atomic # 8 Polarization: -19.75 SS G_CDS: -0.61 Total: -20.37 kcal Atomic # 9 Polarization: -1.95 SS G_CDS: 0.04 Total: -1.91 kcal Atomic # 14 Polarization: 21.39 SS G_CDS: -5.02 Total: 16.37 kcal Total LS contribution 4.87 Total: 4.87 kcal Total: -29.60 -7.05 -36.65 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001435762650.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -88.311 kcal (2) G-P(sol) polarization free energy of solvation -29.596 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -117.907 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.050 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.646 kcal (6) G-S(sol) free energy of system = (1) + (5) -124.957 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds