Wall clock time and date at job start Fri Apr 10 2020 17:15:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.38272 * 119.97573 * 2 1 4 4 C 1.38174 * 120.02453 * 180.30113 * 3 2 1 5 5 C 1.38479 * 119.97385 * 359.44151 * 4 3 2 6 6 F 1.35104 * 120.02409 * 180.25952 * 5 4 3 7 7 C 1.38434 * 119.94982 * 0.55711 * 5 4 3 8 8 C 1.38222 * 119.97488 * 359.72001 * 7 5 4 9 9 C 1.50700 * 119.98622 * 179.97438 * 8 7 5 10 10 H 1.09005 * 109.46512 * 215.02264 * 9 8 7 11 11 C 1.52997 * 109.47261 * 95.02801 * 9 8 7 12 12 O 1.45201 * 109.47270 * 335.02245 * 9 8 7 13 13 C 1.34231 * 116.99857 * 210.00211 * 12 9 8 14 14 O 1.20828 * 120.00188 * 0.02562 * 13 12 9 15 15 C 1.50699 * 119.99896 * 179.97438 * 13 12 9 16 16 H 1.09003 * 109.46948 * 60.00317 * 15 13 12 17 17 C 1.52997 * 109.47328 * 300.00666 * 15 13 12 18 18 C 1.50701 * 109.47306 * 179.97438 * 15 13 12 19 19 H 1.08002 * 119.99415 * 0.02562 * 18 15 13 20 20 C 1.37873 * 120.00307 * 180.02562 * 18 15 13 21 21 N 1.31516 * 119.99870 * 0.02562 * 20 18 15 22 22 Si 1.86796 * 120.00353 * 180.02562 * 20 18 15 23 23 H 1.48503 * 109.46976 * 59.99821 * 22 20 18 24 24 H 1.48499 * 109.47261 * 180.02562 * 22 20 18 25 25 H 1.48503 * 109.47215 * 300.00516 * 22 20 18 26 26 H 1.09002 * 109.47290 * 90.00512 * 1 2 3 27 27 H 1.09002 * 109.47376 * 210.00360 * 1 2 3 28 28 H 1.09005 * 109.47379 * 330.00452 * 1 2 3 29 29 H 1.08002 * 119.98328 * 0.02562 * 3 2 1 30 30 H 1.08004 * 120.00935 * 179.72217 * 4 3 2 31 31 H 1.08000 * 120.01360 * 179.70366 * 7 5 4 32 32 H 1.08997 * 109.47702 * 59.99466 * 11 9 8 33 33 H 1.09004 * 109.47220 * 180.02562 * 11 9 8 34 34 H 1.09005 * 109.46919 * 299.99214 * 11 9 8 35 35 H 1.09001 * 109.46790 * 179.97438 * 17 15 13 36 36 H 1.08996 * 109.46931 * 299.99328 * 17 15 13 37 37 H 1.08992 * 109.47387 * 59.99455 * 17 15 13 38 38 H 0.96997 * 120.00041 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1978 1.1978 0.0000 4 6 3.5795 1.1989 -0.0063 5 6 4.2724 0.0000 -0.0009 6 9 5.6235 0.0000 -0.0017 7 6 3.5797 -1.1986 -0.0009 8 6 2.1975 -1.1974 -0.0004 9 6 1.4432 -2.5020 -0.0009 10 1 0.5325 -2.3948 -0.5904 11 6 1.0790 -2.8811 1.4358 12 8 2.2750 -3.5418 -0.5800 13 6 1.6455 -4.5402 -1.2193 14 8 0.4395 -4.5449 -1.2931 15 6 2.4431 -5.6547 -1.8460 16 1 3.0265 -6.1610 -1.0770 17 6 3.3859 -5.0754 -2.9026 18 6 1.5055 -6.6402 -2.4947 19 1 0.4388 -6.4757 -2.4571 20 6 2.0095 -7.7518 -3.1359 21 7 3.3085 -7.9524 -3.1812 22 14 0.8474 -8.9731 -3.9406 23 1 0.0530 -8.2836 -4.9888 24 1 1.6333 -10.0720 -4.5570 25 1 -0.0681 -9.5347 -2.9151 26 1 -0.3634 -0.0001 -1.0277 27 1 -0.3634 -0.8900 0.5139 28 1 -0.3634 0.8900 0.5138 29 1 1.6571 2.1327 0.0004 30 1 4.1189 2.1347 -0.0108 31 1 4.1191 -2.1342 -0.0015 32 1 0.4546 -2.1006 1.8705 33 1 0.5337 -3.8250 1.4355 34 1 1.9896 -2.9883 2.0253 35 1 3.9631 -5.8816 -3.3556 36 1 2.8025 -4.5693 -3.6717 37 1 4.0640 -4.3629 -2.4331 38 1 3.6631 -8.7346 -3.6320 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001435762650.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:15:43 Heat of formation + Delta-G solvation = -139.035937 kcal Electronic energy + Delta-G solvation = -21820.788727 eV Core-core repulsion = 18348.650889 eV Total energy + Delta-G solvation = -3472.137838 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 280.126 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -49.89380 -41.67734 -40.31728 -37.61894 -35.93775 -34.40134 -33.13839 -32.51133 -30.57968 -27.64460 -27.30392 -25.81414 -24.71996 -23.12523 -21.86739 -21.30980 -18.75060 -18.57906 -18.17404 -17.43833 -17.03346 -16.89638 -16.61361 -16.41392 -16.16791 -15.23544 -14.96372 -14.87036 -14.69547 -14.53146 -14.23854 -13.83898 -13.62045 -13.29743 -13.01557 -12.98047 -12.79839 -12.70956 -12.64582 -12.62178 -12.36454 -12.26703 -12.04933 -11.85487 -11.63179 -11.14135 -11.03605 -10.54360 -9.98971 -9.47935 -8.20650 -6.34363 0.06692 0.19478 1.41233 1.42584 1.45027 1.52124 1.83839 2.42932 2.51651 3.09502 3.16983 3.50906 3.78068 3.90573 3.98580 4.04915 4.10179 4.16274 4.32991 4.60465 4.62617 4.65326 4.75862 4.80312 4.85533 4.87549 4.94855 4.97131 5.05976 5.10797 5.22073 5.28282 5.37801 5.48935 5.55424 5.68128 5.85935 5.89768 6.08162 6.71977 7.02927 7.34588 8.85748 Molecular weight = 280.13amu Principal moments of inertia in cm(-1) A = 0.024789 B = 0.004276 C = 0.003854 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1129.256402 B = 6545.997754 C = 7264.119563 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.085 4.085 3 C -0.083 4.083 4 C -0.142 4.142 5 C 0.071 3.929 6 F -0.150 7.150 7 C -0.143 4.143 8 C -0.072 4.072 9 C 0.114 3.886 10 H 0.088 0.912 11 C -0.158 4.158 12 O -0.358 6.358 13 C 0.475 3.525 14 O -0.537 6.537 15 C 0.050 3.950 16 H 0.049 0.951 17 C -0.120 4.120 18 C -0.539 4.539 19 H 0.058 0.942 20 C 0.022 3.978 21 N -0.910 5.910 22 Si 0.964 3.036 23 H -0.273 1.273 24 H -0.275 1.275 25 H -0.273 1.273 26 H 0.076 0.924 27 H 0.066 0.934 28 H 0.101 0.899 29 H 0.174 0.826 30 H 0.162 0.838 31 H 0.126 0.874 32 H 0.104 0.896 33 H 0.052 0.948 34 H 0.069 0.931 35 H 0.078 0.922 36 H 0.028 0.972 37 H 0.044 0.956 38 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.910 19.096 8.022 20.801 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.085 4.085 3 C -0.101 4.101 4 C -0.160 4.160 5 C 0.052 3.948 6 F -0.128 7.128 7 C -0.162 4.162 8 C -0.072 4.072 9 C 0.059 3.941 10 H 0.106 0.894 11 C -0.215 4.215 12 O -0.275 6.275 13 C 0.321 3.679 14 O -0.426 6.426 15 C 0.031 3.969 16 H 0.067 0.933 17 C -0.178 4.178 18 C -0.576 4.576 19 H 0.077 0.923 20 C -0.178 4.178 21 N -0.548 5.548 22 Si 0.789 3.211 23 H -0.198 1.198 24 H -0.200 1.200 25 H -0.198 1.198 26 H 0.095 0.905 27 H 0.085 0.915 28 H 0.120 0.880 29 H 0.191 0.809 30 H 0.180 0.820 31 H 0.144 0.856 32 H 0.122 0.878 33 H 0.071 0.929 34 H 0.088 0.912 35 H 0.096 0.904 36 H 0.047 0.953 37 H 0.063 0.937 38 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -2.082 18.994 7.957 20.698 hybrid contribution -0.012 -1.140 -0.468 1.233 sum -2.094 17.854 7.489 19.474 Atomic orbital electron populations 1.21005 0.89030 1.04538 1.03471 1.20035 0.97760 0.91526 0.99193 1.21238 0.92684 0.98499 0.97632 1.21484 0.95562 0.96990 1.01983 1.17889 0.76697 0.95143 1.05054 1.91472 1.29661 1.97487 1.94218 1.21006 0.94775 0.97777 1.02628 1.19348 0.92743 0.93510 1.01598 1.21571 0.93007 0.83549 0.95944 0.89432 1.22160 1.02902 1.02852 0.93548 1.86615 1.42086 1.33342 1.65495 1.24778 0.87870 0.81881 0.73411 1.90457 1.17241 1.76869 1.58061 1.18667 0.94584 0.88407 0.95217 0.93303 1.21550 0.98282 1.00005 0.97926 1.21219 0.93302 1.06924 1.36204 0.92345 1.25659 0.96892 0.99107 0.96131 1.69959 1.12331 1.28954 1.43573 0.85512 0.78711 0.78186 0.78674 1.19818 1.19957 1.19806 0.90530 0.91476 0.88028 0.80904 0.82016 0.85636 0.87793 0.92889 0.91161 0.90350 0.95308 0.93732 0.92261 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.94 9.21 71.23 0.66 -1.29 16 2 C -0.08 -1.73 5.88 -19.86 -0.12 -1.84 16 3 C -0.08 -1.31 9.70 22.26 0.22 -1.10 16 4 C -0.14 -2.61 10.03 22.31 0.22 -2.39 16 5 C 0.07 1.81 7.30 22.37 0.16 1.98 16 6 F -0.15 -4.10 17.27 44.97 0.78 -3.33 16 7 C -0.14 -4.14 9.33 22.31 0.21 -3.93 16 8 C -0.07 -1.95 5.07 -19.87 -0.10 -2.05 16 9 C 0.11 3.61 2.08 29.85 0.06 3.68 16 10 H 0.09 2.91 6.00 -2.38 -0.01 2.90 16 11 C -0.16 -4.22 9.34 71.98 0.67 -3.55 16 12 O -0.36 -14.37 8.61 -51.43 -0.44 -14.81 16 13 C 0.48 22.61 7.22 71.24 0.51 23.12 16 14 O -0.54 -27.31 14.68 21.96 0.32 -26.98 16 15 C 0.05 2.62 2.74 -12.29 -0.03 2.59 16 16 H 0.05 2.66 8.14 -2.39 -0.02 2.64 16 17 C -0.12 -5.82 8.90 71.98 0.64 -5.18 16 18 C -0.54 -30.79 8.37 25.60 0.21 -30.57 16 19 H 0.06 3.47 6.76 -2.91 -0.02 3.45 16 20 C 0.02 1.22 5.30 84.65 0.45 1.67 16 21 N -0.91 -51.02 11.32 21.45 0.24 -50.78 16 22 Si 0.96 43.95 29.54 68.60 2.03 45.98 16 23 H -0.27 -12.27 7.11 99.48 0.71 -11.56 16 24 H -0.27 -11.91 7.11 99.48 0.71 -11.20 16 25 H -0.27 -12.25 7.11 99.48 0.71 -11.55 16 26 H 0.08 1.23 8.14 -2.39 -0.02 1.21 16 27 H 0.07 1.14 5.42 -2.39 -0.01 1.13 16 28 H 0.10 0.97 8.09 -2.38 -0.02 0.95 16 29 H 0.17 1.38 8.06 -2.91 -0.02 1.36 16 30 H 0.16 2.04 8.06 -2.91 -0.02 2.02 16 31 H 0.13 4.03 7.34 -2.91 -0.02 4.01 16 32 H 0.10 2.07 6.91 -2.39 -0.02 2.06 16 33 H 0.05 1.60 8.14 -2.38 -0.02 1.58 16 34 H 0.07 1.82 8.14 -2.38 -0.02 1.80 16 35 H 0.08 4.10 6.07 -2.39 -0.01 4.08 16 36 H 0.03 1.36 8.14 -2.39 -0.02 1.34 16 37 H 0.04 1.91 8.11 -2.39 -0.02 1.89 16 38 H 0.27 14.19 8.31 -92.71 -0.77 13.42 16 Total: -1.00 -65.03 323.06 7.76 -57.27 By element: Atomic # 1 Polarization: 10.45 SS G_CDS: 1.07 Total: 11.52 kcal Atomic # 6 Polarization: -22.64 SS G_CDS: 3.77 Total: -18.87 kcal Atomic # 7 Polarization: -51.02 SS G_CDS: 0.24 Total: -50.78 kcal Atomic # 8 Polarization: -41.67 SS G_CDS: -0.12 Total: -41.79 kcal Atomic # 9 Polarization: -4.10 SS G_CDS: 0.78 Total: -3.33 kcal Atomic # 14 Polarization: 43.95 SS G_CDS: 2.03 Total: 45.98 kcal Total: -65.03 7.76 -57.27 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001435762650.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -81.768 kcal (2) G-P(sol) polarization free energy of solvation -65.030 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -146.798 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.763 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.268 kcal (6) G-S(sol) free energy of system = (1) + (5) -139.036 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds