Wall clock time and date at job start Fri Apr 10 2020 17:15:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 N 1.30177 * 126.80658 * 2 1 4 4 O 1.20897 * 111.73977 * 180.29141 * 3 2 1 5 5 C 1.34285 * 111.62774 * 359.70121 * 4 3 2 6 6 C 1.35859 * 106.36078 * 0.02562 * 5 4 3 7 7 N 1.40782 * 128.05685 * 180.02562 * 6 5 4 8 8 C 1.34777 * 120.00084 * 0.02562 * 7 6 5 9 9 O 1.21602 * 120.00042 * 354.86158 * 8 7 6 10 10 N 1.34774 * 119.99957 * 174.86620 * 8 7 6 11 11 C 1.46965 * 120.59158 * 4.60883 * 10 8 7 12 12 C 1.53817 * 108.39362 * 124.76152 * 11 10 8 13 13 N 1.46958 * 108.58326 * 49.63802 * 12 11 10 14 14 C 1.36937 * 120.59857 * 124.62190 * 13 12 11 15 15 H 1.07991 * 120.00167 * 215.55216 * 14 13 12 16 16 C 1.38816 * 119.99521 * 35.55673 * 14 13 12 17 17 N 1.31617 * 119.99996 * 12.91277 * 16 14 13 18 18 Si 1.86799 * 119.99535 * 192.90961 * 16 14 13 19 19 H 1.48499 * 109.47265 * 0.02562 * 18 16 14 20 20 H 1.48508 * 109.46970 * 120.00147 * 18 16 14 21 21 H 1.48504 * 109.47240 * 240.00037 * 18 16 14 22 22 C 1.46968 * 118.80869 * 304.64518 * 13 12 11 23 23 C 1.46963 * 120.59122 * 184.89062 * 10 8 7 24 24 H 1.09006 * 109.46956 * 270.19706 * 1 2 3 25 25 H 1.08995 * 109.47255 * 30.19421 * 1 2 3 26 26 H 1.09000 * 109.47475 * 150.19785 * 1 2 3 27 27 H 1.08002 * 126.82415 * 179.97438 * 5 4 3 28 28 H 0.96999 * 119.99765 * 179.74651 * 7 6 5 29 29 H 1.08998 * 109.60935 * 244.53631 * 11 10 8 30 30 H 1.08993 * 109.61340 * 5.05483 * 11 10 8 31 31 H 1.09000 * 109.73865 * 289.84165 * 12 11 10 32 32 H 1.09002 * 109.67147 * 169.38693 * 12 11 10 33 33 H 0.97008 * 119.99715 * 180.02562 * 17 16 14 34 34 H 1.08996 * 109.61077 * 295.48055 * 22 13 12 35 35 H 1.09005 * 109.75355 * 175.05778 * 22 13 12 36 36 H 1.08997 * 109.61717 * 354.94333 * 23 10 8 37 37 H 1.08996 * 109.61185 * 115.28793 * 23 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2869 1.0423 0.0000 4 8 3.4543 0.7280 -0.0057 5 6 3.6078 -0.6060 -0.0039 6 6 2.3565 -1.1352 0.0034 7 7 1.9889 -2.4942 0.0083 8 6 2.9397 -3.4494 0.0065 9 8 4.1116 -3.1407 -0.0937 10 7 2.5916 -4.7468 0.1157 11 6 1.1763 -5.1423 0.1360 12 6 0.9448 -6.1749 -0.9803 13 7 1.9735 -7.2189 -0.8733 14 6 1.6198 -8.5371 -0.7614 15 1 2.2077 -9.2037 -0.1480 16 6 0.5056 -9.0164 -1.4365 17 7 -0.0600 -8.2864 -2.3743 18 14 -0.1907 -10.6974 -1.0140 19 1 0.6206 -11.3118 0.0674 20 1 -1.5956 -10.5503 -0.5555 21 1 -0.1513 -11.5664 -2.2176 22 6 3.3887 -6.8228 -0.8879 23 6 3.6204 -5.7908 0.2227 24 1 -0.3633 0.0035 1.0277 25 1 -0.3633 0.8882 -0.5168 26 1 -0.3634 -0.8917 -0.5107 27 1 4.5406 -1.1503 -0.0083 28 1 1.0514 -2.7430 0.0171 29 1 0.9337 -5.5841 1.1025 30 1 0.5495 -4.2676 -0.0369 31 1 1.0173 -5.6881 -1.9529 32 1 -0.0430 -6.6218 -0.8678 33 1 -0.8389 -8.6212 -2.8458 34 1 3.6353 -6.3822 -1.8539 35 1 4.0175 -7.6959 -0.7130 36 1 4.6080 -5.3445 0.1071 37 1 3.5498 -6.2755 1.1964 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001476822886.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:15:59 Heat of formation + Delta-G solvation = 71.907184 kcal Electronic energy + Delta-G solvation = -22136.092670 eV Core-core repulsion = 18725.314725 eV Total energy + Delta-G solvation = -3410.777945 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 280.132 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -44.88887 -40.31826 -37.26383 -35.72854 -34.10862 -33.57702 -31.58407 -30.51858 -30.19881 -28.75342 -26.99666 -24.15400 -23.27429 -22.55224 -21.76561 -20.69461 -19.10271 -18.60882 -17.59188 -17.52063 -16.53551 -16.31024 -15.45622 -15.08402 -14.72442 -13.96938 -13.90937 -13.65398 -13.62195 -13.50924 -13.40162 -13.24100 -12.81301 -12.58898 -11.78432 -11.50264 -11.41053 -11.32550 -10.94068 -10.87187 -10.55852 -10.41533 -10.25172 -10.01694 -9.81741 -9.81175 -8.74614 -8.62308 -8.17694 -6.71638 -5.95487 -3.48192 1.51325 2.10251 2.41242 3.26441 3.33981 3.35779 3.37419 3.50590 3.82286 4.18753 4.34803 4.36734 4.94622 5.09910 5.23687 5.27942 5.32116 5.46655 5.59307 5.70640 5.74803 5.80330 5.86691 5.94459 6.03586 6.18899 6.30537 6.46505 6.64778 6.80018 6.91557 7.10591 7.28331 7.66842 7.92837 8.22927 8.31456 8.54860 9.03363 9.63280 10.24497 11.12217 Molecular weight = 280.13amu Principal moments of inertia in cm(-1) A = 0.033712 B = 0.003954 C = 0.003639 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 830.368100 B = 7080.128631 C = 7692.496739 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 C -0.002 4.002 3 N -0.357 5.357 4 O 0.097 5.903 5 C -0.076 4.076 6 C 0.055 3.945 7 N -0.653 5.653 8 C 0.707 3.293 9 O -0.589 6.589 10 N -0.605 5.605 11 C 0.083 3.917 12 C 0.162 3.838 13 N -0.589 5.589 14 C -0.263 4.263 15 H 0.066 0.934 16 C 0.011 3.989 17 N -0.900 5.900 18 Si 0.904 3.096 19 H -0.276 1.276 20 H -0.288 1.288 21 H -0.288 1.288 22 C 0.130 3.870 23 C 0.112 3.888 24 H 0.080 0.920 25 H 0.080 0.920 26 H 0.078 0.922 27 H 0.236 0.764 28 H 0.412 0.588 29 H 0.069 0.931 30 H 0.059 0.941 31 H 0.026 0.974 32 H 0.092 0.908 33 H 0.256 0.744 34 H 0.025 0.975 35 H 0.069 0.931 36 H 0.085 0.915 37 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.004 11.861 5.732 13.211 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.163 4.163 3 N -0.063 5.063 4 O 0.033 5.967 5 C -0.161 4.161 6 C -0.046 4.046 7 N -0.305 5.305 8 C 0.409 3.591 9 O -0.469 6.469 10 N -0.340 5.340 11 C -0.042 4.042 12 C 0.035 3.965 13 N -0.311 5.311 14 C -0.392 4.392 15 H 0.083 0.917 16 C -0.189 4.189 17 N -0.543 5.543 18 Si 0.734 3.266 19 H -0.200 1.200 20 H -0.214 1.214 21 H -0.215 1.215 22 C 0.003 3.997 23 C -0.012 4.012 24 H 0.099 0.901 25 H 0.099 0.901 26 H 0.097 0.903 27 H 0.251 0.749 28 H 0.251 0.749 29 H 0.088 0.912 30 H 0.078 0.922 31 H 0.044 0.956 32 H 0.110 0.890 33 H 0.066 0.934 34 H 0.043 0.957 35 H 0.087 0.913 36 H 0.104 0.896 37 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 1.476 13.228 5.562 14.426 hybrid contribution -1.121 -1.981 0.051 2.277 sum 0.355 11.247 5.614 12.576 Atomic orbital electron populations 1.20149 0.85757 1.03928 1.03406 1.23256 0.98810 0.87536 1.06677 1.73780 0.89764 1.23675 1.19083 1.84835 1.20663 1.23145 1.68057 1.26183 1.00857 0.81892 1.07147 1.18335 0.93067 0.84936 1.08268 1.42102 1.10174 1.01126 1.77054 1.15701 0.84219 0.81003 0.78211 1.90754 1.16754 1.80834 1.58510 1.47208 1.08703 1.03395 1.74672 1.22749 0.79566 0.98928 1.02940 1.21157 0.95248 0.87608 0.92452 1.43864 0.98761 1.02897 1.85627 1.19186 1.11572 0.85446 1.23014 0.91653 1.25283 1.00512 0.97793 0.95273 1.69995 1.23052 1.37993 1.23228 0.86205 0.78775 0.83760 0.77892 1.20048 1.21429 1.21504 1.21355 0.88125 0.95439 0.94762 1.22205 0.90460 0.88067 1.00440 0.90115 0.90132 0.90292 0.74852 0.74917 0.91230 0.92244 0.95566 0.88960 0.93436 0.95718 0.91251 0.89632 0.91765 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.66 10.48 36.01 0.38 -0.28 16 2 C 0.00 -0.02 7.34 -81.94 -0.60 -0.62 16 3 N -0.36 -4.96 12.06 33.56 0.40 -4.55 16 4 O 0.10 1.32 11.20 16.53 0.19 1.51 16 5 C -0.08 -1.05 11.17 29.88 0.33 -0.71 16 6 C 0.05 0.76 7.16 -83.24 -0.60 0.16 16 7 N -0.65 -9.01 5.39 -13.99 -0.08 -9.08 16 8 C 0.71 11.73 8.27 -86.92 -0.72 11.02 16 9 O -0.59 -10.84 13.18 5.28 0.07 -10.77 16 10 N -0.60 -10.17 2.94 -177.94 -0.52 -10.69 16 11 C 0.08 1.34 6.59 -3.36 -0.02 1.32 16 12 C 0.16 3.44 5.47 -3.37 -0.02 3.42 16 13 N -0.59 -13.65 2.93 -171.76 -0.50 -14.15 16 14 C -0.26 -6.71 9.52 -15.06 -0.14 -6.85 16 15 H 0.07 1.65 7.86 -52.49 -0.41 1.24 16 16 C 0.01 0.29 4.97 -17.43 -0.09 0.21 16 17 N -0.90 -24.54 11.48 55.49 0.64 -23.90 16 18 Si 0.90 20.38 29.57 -169.99 -5.03 15.35 16 19 H -0.28 -6.08 7.11 56.52 0.40 -5.68 16 20 H -0.29 -6.48 7.11 56.52 0.40 -6.08 16 21 H -0.29 -6.63 7.11 56.52 0.40 -6.22 16 22 C 0.13 2.59 6.67 -3.59 -0.02 2.57 16 23 C 0.11 1.92 6.60 -3.60 -0.02 1.90 16 24 H 0.08 0.60 8.14 -51.93 -0.42 0.18 16 25 H 0.08 0.65 8.14 -51.93 -0.42 0.23 16 26 H 0.08 0.60 8.10 -51.93 -0.42 0.18 16 27 H 0.24 3.18 6.16 -52.49 -0.32 2.86 16 28 H 0.41 4.75 6.25 -40.82 -0.26 4.49 16 29 H 0.07 1.11 8.14 -51.93 -0.42 0.69 16 30 H 0.06 0.76 5.60 -51.93 -0.29 0.47 16 31 H 0.03 0.60 8.14 -51.93 -0.42 0.18 16 32 H 0.09 2.15 6.42 -51.93 -0.33 1.82 16 33 H 0.26 6.74 8.31 -40.82 -0.34 6.40 16 34 H 0.02 0.52 8.14 -51.93 -0.42 0.10 16 35 H 0.07 1.32 7.94 -51.93 -0.41 0.91 16 36 H 0.09 1.42 6.99 -51.93 -0.36 1.06 16 37 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 LS Contribution 306.78 15.07 4.62 4.62 Total: -1.00 -29.89 306.78 -6.21 -36.10 By element: Atomic # 1 Polarization: 7.93 SS G_CDS: -4.48 Total: 3.45 kcal Atomic # 6 Polarization: 13.64 SS G_CDS: -1.52 Total: 12.11 kcal Atomic # 7 Polarization: -62.32 SS G_CDS: -0.06 Total: -62.38 kcal Atomic # 8 Polarization: -9.52 SS G_CDS: 0.25 Total: -9.26 kcal Atomic # 14 Polarization: 20.38 SS G_CDS: -5.03 Total: 15.35 kcal Total LS contribution 4.62 Total: 4.62 kcal Total: -29.89 -6.21 -36.10 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001476822886.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 108.011 kcal (2) G-P(sol) polarization free energy of solvation -29.889 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 78.122 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.215 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.103 kcal (6) G-S(sol) free energy of system = (1) + (5) 71.907 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds