Wall clock time and date at job start Fri Apr 10 2020 17:15:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 N 1.30177 * 126.80658 * 2 1 4 4 O 1.20897 * 111.73977 * 180.29141 * 3 2 1 5 5 C 1.34285 * 111.62774 * 359.70121 * 4 3 2 6 6 C 1.35859 * 106.36078 * 0.02562 * 5 4 3 7 7 N 1.40782 * 128.05685 * 180.02562 * 6 5 4 8 8 C 1.34777 * 120.00084 * 0.02562 * 7 6 5 9 9 O 1.21602 * 120.00042 * 354.86158 * 8 7 6 10 10 N 1.34774 * 119.99957 * 174.86620 * 8 7 6 11 11 C 1.46965 * 120.59158 * 4.60883 * 10 8 7 12 12 C 1.53817 * 108.39362 * 124.76152 * 11 10 8 13 13 N 1.46958 * 108.58326 * 49.63802 * 12 11 10 14 14 C 1.36937 * 120.59857 * 124.62190 * 13 12 11 15 15 H 1.07991 * 120.00167 * 215.55216 * 14 13 12 16 16 C 1.38816 * 119.99521 * 35.55673 * 14 13 12 17 17 N 1.31617 * 119.99996 * 12.91277 * 16 14 13 18 18 Si 1.86799 * 119.99535 * 192.90961 * 16 14 13 19 19 H 1.48499 * 109.47265 * 0.02562 * 18 16 14 20 20 H 1.48508 * 109.46970 * 120.00147 * 18 16 14 21 21 H 1.48504 * 109.47240 * 240.00037 * 18 16 14 22 22 C 1.46968 * 118.80869 * 304.64518 * 13 12 11 23 23 C 1.46963 * 120.59122 * 184.89062 * 10 8 7 24 24 H 1.09006 * 109.46956 * 270.19706 * 1 2 3 25 25 H 1.08995 * 109.47255 * 30.19421 * 1 2 3 26 26 H 1.09000 * 109.47475 * 150.19785 * 1 2 3 27 27 H 1.08002 * 126.82415 * 179.97438 * 5 4 3 28 28 H 0.96999 * 119.99765 * 179.74651 * 7 6 5 29 29 H 1.08998 * 109.60935 * 244.53631 * 11 10 8 30 30 H 1.08993 * 109.61340 * 5.05483 * 11 10 8 31 31 H 1.09000 * 109.73865 * 289.84165 * 12 11 10 32 32 H 1.09002 * 109.67147 * 169.38693 * 12 11 10 33 33 H 0.97008 * 119.99715 * 180.02562 * 17 16 14 34 34 H 1.08996 * 109.61077 * 295.48055 * 22 13 12 35 35 H 1.09005 * 109.75355 * 175.05778 * 22 13 12 36 36 H 1.08997 * 109.61717 * 354.94333 * 23 10 8 37 37 H 1.08996 * 109.61185 * 115.28793 * 23 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2869 1.0423 0.0000 4 8 3.4543 0.7280 -0.0057 5 6 3.6078 -0.6060 -0.0039 6 6 2.3565 -1.1352 0.0034 7 7 1.9889 -2.4942 0.0083 8 6 2.9397 -3.4494 0.0065 9 8 4.1116 -3.1407 -0.0937 10 7 2.5916 -4.7468 0.1157 11 6 1.1763 -5.1423 0.1360 12 6 0.9448 -6.1749 -0.9803 13 7 1.9735 -7.2189 -0.8733 14 6 1.6198 -8.5371 -0.7614 15 1 2.2077 -9.2037 -0.1480 16 6 0.5056 -9.0164 -1.4365 17 7 -0.0600 -8.2864 -2.3743 18 14 -0.1907 -10.6974 -1.0140 19 1 0.6206 -11.3118 0.0674 20 1 -1.5956 -10.5503 -0.5555 21 1 -0.1513 -11.5664 -2.2176 22 6 3.3887 -6.8228 -0.8879 23 6 3.6204 -5.7908 0.2227 24 1 -0.3633 0.0035 1.0277 25 1 -0.3633 0.8882 -0.5168 26 1 -0.3634 -0.8917 -0.5107 27 1 4.5406 -1.1503 -0.0083 28 1 1.0514 -2.7430 0.0171 29 1 0.9337 -5.5841 1.1025 30 1 0.5495 -4.2676 -0.0369 31 1 1.0173 -5.6881 -1.9529 32 1 -0.0430 -6.6218 -0.8678 33 1 -0.8389 -8.6212 -2.8458 34 1 3.6353 -6.3822 -1.8539 35 1 4.0175 -7.6959 -0.7130 36 1 4.6080 -5.3445 0.1071 37 1 3.5498 -6.2755 1.1964 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001476822886.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:15:56 Heat of formation + Delta-G solvation = 52.959085 kcal Electronic energy + Delta-G solvation = -22136.914321 eV Core-core repulsion = 18725.314725 eV Total energy + Delta-G solvation = -3411.599596 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 280.132 amu Computer time = 2.92 seconds Orbital eigenvalues (eV) -45.91654 -41.62333 -38.75751 -36.89692 -35.71301 -34.68024 -33.23164 -31.97076 -31.51396 -29.57205 -28.63677 -25.75906 -24.72954 -23.93701 -22.79161 -22.13962 -20.49921 -19.83625 -18.88337 -18.62580 -17.94175 -17.67113 -16.88353 -16.64011 -16.18090 -15.50624 -15.29948 -15.22440 -15.01908 -14.79645 -14.38565 -14.16113 -14.07801 -13.44229 -13.31220 -13.22005 -12.72461 -12.59896 -12.51628 -12.32190 -12.19165 -12.07295 -11.98092 -11.66081 -11.30436 -10.79931 -10.61070 -10.03793 -9.39106 -8.56364 -7.89240 -5.45714 0.45814 1.05699 1.21066 1.48260 1.51988 1.61294 2.07352 2.37536 2.51146 2.68387 3.20686 3.27050 3.41377 3.59677 3.95965 4.16037 4.23381 4.31744 4.44126 4.52549 4.61408 4.66655 4.67581 4.73461 4.80348 4.87362 5.07233 5.11967 5.21787 5.36346 5.42288 5.56725 5.66157 5.80294 6.40057 6.68059 7.12887 7.19104 7.27658 7.77270 8.34650 9.15392 Molecular weight = 280.13amu Principal moments of inertia in cm(-1) A = 0.033712 B = 0.003954 C = 0.003639 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 830.368100 B = 7080.128631 C = 7692.496739 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 C 0.010 3.990 3 N -0.375 5.375 4 O 0.090 5.910 5 C -0.076 4.076 6 C 0.038 3.962 7 N -0.640 5.640 8 C 0.705 3.295 9 O -0.609 6.609 10 N -0.609 5.609 11 C 0.098 3.902 12 C 0.167 3.833 13 N -0.607 5.607 14 C -0.269 4.269 15 H 0.067 0.933 16 C -0.037 4.037 17 N -0.932 5.932 18 Si 0.967 3.033 19 H -0.266 1.266 20 H -0.287 1.287 21 H -0.296 1.296 22 C 0.130 3.870 23 C 0.124 3.876 24 H 0.099 0.901 25 H 0.088 0.912 26 H 0.094 0.906 27 H 0.234 0.766 28 H 0.423 0.577 29 H 0.080 0.920 30 H 0.097 0.903 31 H -0.001 1.001 32 H 0.068 0.932 33 H 0.252 0.748 34 H 0.007 0.993 35 H 0.074 0.926 36 H 0.092 0.908 37 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.339 12.326 7.013 14.185 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.152 4.152 3 N -0.084 5.084 4 O 0.029 5.971 5 C -0.160 4.160 6 C -0.062 4.062 7 N -0.292 5.292 8 C 0.407 3.593 9 O -0.490 6.490 10 N -0.344 5.344 11 C -0.026 4.026 12 C 0.041 3.959 13 N -0.330 5.330 14 C -0.399 4.399 15 H 0.084 0.916 16 C -0.234 4.234 17 N -0.576 5.576 18 Si 0.795 3.205 19 H -0.190 1.190 20 H -0.213 1.213 21 H -0.223 1.223 22 C 0.004 3.996 23 C 0.000 4.000 24 H 0.117 0.883 25 H 0.107 0.893 26 H 0.112 0.888 27 H 0.250 0.750 28 H 0.264 0.736 29 H 0.098 0.902 30 H 0.115 0.885 31 H 0.017 0.983 32 H 0.086 0.914 33 H 0.061 0.939 34 H 0.025 0.975 35 H 0.093 0.907 36 H 0.110 0.890 37 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 0.827 13.724 6.864 15.367 hybrid contribution -0.863 -2.078 -0.388 2.283 sum -0.036 11.646 6.476 13.325 Atomic orbital electron populations 1.20371 0.83077 1.05124 1.04934 1.23786 1.00350 0.86441 1.04600 1.73783 0.89929 1.24359 1.20298 1.84830 1.20860 1.22941 1.68475 1.26232 1.01086 0.82136 1.06571 1.18501 0.93483 0.85076 1.09188 1.41863 1.10250 1.00719 1.76386 1.15768 0.84357 0.81128 0.78006 1.90748 1.17812 1.81140 1.59298 1.47195 1.08724 1.03559 1.74909 1.22528 0.79922 0.98971 1.01137 1.20993 0.93749 0.88081 0.93095 1.44136 1.00314 1.02758 1.85825 1.19484 1.11389 0.86663 1.22385 0.91560 1.25959 1.01110 1.00921 0.95391 1.70134 1.23479 1.39527 1.24479 0.85232 0.78024 0.79901 0.77373 1.19019 1.21338 1.22282 1.21411 0.86651 0.96478 0.95071 1.22008 0.90967 0.87424 0.99608 0.88301 0.89308 0.88763 0.75030 0.73551 0.90180 0.88542 0.98255 0.91366 0.93884 0.97539 0.90727 0.88973 0.90515 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.13 10.48 71.24 0.75 -0.38 16 2 C 0.01 0.22 7.34 43.68 0.32 0.54 16 3 N -0.38 -9.87 12.06 -48.97 -0.59 -10.46 16 4 O 0.09 2.38 11.20 69.32 0.78 3.15 16 5 C -0.08 -2.00 11.17 67.27 0.75 -1.25 16 6 C 0.04 0.97 7.16 38.03 0.27 1.24 16 7 N -0.64 -16.10 5.39 -316.43 -1.70 -17.80 16 8 C 0.71 22.08 8.27 179.06 1.48 23.56 16 9 O -0.61 -21.60 13.18 -4.04 -0.05 -21.66 16 10 N -0.61 -19.31 2.94 -835.14 -2.46 -21.77 16 11 C 0.10 2.98 6.59 86.57 0.57 3.55 16 12 C 0.17 7.07 5.47 86.57 0.47 7.55 16 13 N -0.61 -28.07 2.93 -697.34 -2.04 -30.11 16 14 C -0.27 -13.71 9.52 84.03 0.80 -12.91 16 15 H 0.07 3.30 7.86 -2.92 -0.02 3.28 16 16 C -0.04 -1.93 4.97 84.86 0.42 -1.51 16 17 N -0.93 -51.56 11.48 21.65 0.25 -51.31 16 18 Si 0.97 41.87 29.57 68.60 2.03 43.90 16 19 H -0.27 -10.97 7.11 99.48 0.71 -10.26 16 20 H -0.29 -12.29 7.11 99.48 0.71 -11.58 16 21 H -0.30 -13.07 7.11 99.48 0.71 -12.36 16 22 C 0.13 5.15 6.67 86.42 0.58 5.72 16 23 C 0.12 4.06 6.60 86.42 0.57 4.63 16 24 H 0.10 1.12 8.14 -2.38 -0.02 1.10 16 25 H 0.09 1.17 8.14 -2.39 -0.02 1.15 16 26 H 0.09 1.09 8.10 -2.39 -0.02 1.07 16 27 H 0.23 6.19 6.16 -2.91 -0.02 6.18 16 28 H 0.42 8.39 6.25 -92.71 -0.58 7.81 16 29 H 0.08 2.32 8.14 -2.39 -0.02 2.31 16 30 H 0.10 2.18 5.60 -2.39 -0.01 2.17 16 31 H 0.00 -0.03 8.14 -2.39 -0.02 -0.05 16 32 H 0.07 3.21 6.42 -2.39 -0.02 3.19 16 33 H 0.25 13.52 8.31 -92.70 -0.77 12.75 16 34 H 0.01 0.28 8.14 -2.39 -0.02 0.26 16 35 H 0.07 2.81 7.94 -2.38 -0.02 2.79 16 36 H 0.09 2.92 6.99 -2.39 -0.02 2.90 16 37 H 0.08 2.35 8.14 -2.39 -0.02 2.33 16 Total: -1.00 -64.01 306.78 3.72 -60.28 By element: Atomic # 1 Polarization: 14.50 SS G_CDS: 0.53 Total: 15.03 kcal Atomic # 6 Polarization: 23.76 SS G_CDS: 6.98 Total: 30.74 kcal Atomic # 7 Polarization: -124.91 SS G_CDS: -6.54 Total: -131.45 kcal Atomic # 8 Polarization: -19.22 SS G_CDS: 0.72 Total: -18.50 kcal Atomic # 14 Polarization: 41.87 SS G_CDS: 2.03 Total: 43.90 kcal Total: -64.01 3.72 -60.28 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001476822886.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 113.244 kcal (2) G-P(sol) polarization free energy of solvation -64.006 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.238 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.721 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.285 kcal (6) G-S(sol) free energy of system = (1) + (5) 52.959 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.92 seconds