Wall clock time and date at job start Fri Apr 10 2020 17:16:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 N 1.29942 * 125.30785 * 2 1 4 4 O 1.41878 * 107.41694 * 180.02562 * 3 2 1 5 5 N 1.41881 * 106.38521 * 359.78245 * 4 3 2 6 6 C 1.29949 * 107.41398 * 0.36663 * 5 4 3 7 7 C 1.50701 * 125.30658 * 179.89125 * 6 5 4 8 8 C 1.50707 * 109.46796 * 269.69672 * 7 6 5 9 9 O 1.21272 * 120.00302 * 359.97438 * 8 7 6 10 10 N 1.34777 * 119.99431 * 179.97438 * 8 7 6 11 11 C 1.46505 * 119.99844 * 180.02562 * 10 8 7 12 12 C 1.50701 * 109.47208 * 180.02562 * 11 10 8 13 13 C 1.30993 * 120.00239 * 127.15517 * 12 11 10 14 14 C 1.50700 * 120.00033 * 7.55330 * 13 12 11 15 15 N 1.46501 * 109.46758 * 127.00514 * 14 13 12 16 16 C 1.36937 * 119.99830 * 180.02562 * 15 14 13 17 17 H 1.08002 * 120.00505 * 359.97438 * 16 15 14 18 18 C 1.38811 * 119.99996 * 180.02562 * 16 15 14 19 19 N 1.31625 * 120.00189 * 180.02562 * 18 16 15 20 20 Si 1.86799 * 120.00122 * 359.97438 * 18 16 15 21 21 H 1.48499 * 109.46892 * 90.00475 * 20 18 16 22 22 H 1.48496 * 109.47081 * 210.00321 * 20 18 16 23 23 H 1.48496 * 109.47136 * 330.00589 * 20 18 16 24 24 H 1.09000 * 109.46741 * 269.99817 * 1 2 3 25 25 H 1.09000 * 109.46717 * 29.99600 * 1 2 3 26 26 H 1.08998 * 109.47518 * 149.99398 * 1 2 3 27 27 H 1.08994 * 109.47394 * 149.69372 * 7 6 5 28 28 H 1.09002 * 109.46687 * 29.68871 * 7 6 5 29 29 H 0.97003 * 120.00260 * 359.97438 * 10 8 7 30 30 H 1.09001 * 109.46552 * 299.99752 * 11 10 8 31 31 H 1.08994 * 109.47238 * 59.99544 * 11 10 8 32 32 H 1.08003 * 119.99323 * 307.15535 * 12 11 10 33 33 H 1.08005 * 119.99942 * 187.56174 * 13 12 11 34 34 H 1.08995 * 109.47607 * 247.00858 * 14 13 12 35 35 H 1.09001 * 109.47213 * 7.01353 * 14 13 12 36 36 H 0.96995 * 120.00512 * 0.02562 * 15 14 13 37 37 H 0.96993 * 120.00474 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2581 1.0604 0.0000 4 8 3.6082 0.6245 -0.0006 5 7 3.5710 -0.7938 0.0042 6 6 2.3213 -1.1500 -0.0006 7 6 1.8208 -2.5714 -0.0004 8 6 1.6530 -3.0451 -1.4212 9 8 1.9137 -2.3016 -2.3431 10 7 1.2133 -4.2952 -1.6672 11 6 1.0507 -4.7559 -3.0484 12 6 0.5501 -6.1773 -3.0482 13 6 -0.5204 -6.4949 -3.7330 14 6 -1.1528 -5.4839 -4.6546 15 7 -1.3052 -6.0682 -5.9893 16 6 -1.8602 -5.3300 -7.0005 17 1 -2.1858 -4.3173 -6.8139 18 6 -2.0051 -5.8838 -8.2651 19 7 -2.5381 -5.1742 -9.2371 20 14 -1.4426 -7.6356 -8.5878 21 1 -2.5634 -8.5724 -8.3208 22 1 -1.0156 -7.7654 -10.0041 23 1 -0.3017 -7.9615 -7.6949 24 1 -0.3633 0.0000 1.0277 25 1 -0.3633 0.8900 -0.5138 26 1 -0.3634 -0.8899 -0.5139 27 1 0.8610 -2.6187 0.5141 28 1 2.5400 -3.2097 0.5128 29 1 1.0051 -4.8900 -0.9298 30 1 0.3314 -4.1179 -3.5619 31 1 2.0106 -4.7084 -3.5626 32 1 1.0740 -6.9342 -2.4833 33 1 -0.9500 -7.4812 -3.6372 34 1 -2.1318 -5.2017 -4.2674 35 1 -0.5175 -4.6003 -4.7152 36 1 -1.0132 -6.9778 -6.1569 37 1 -2.6390 -5.5609 -10.1209 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001497713146.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:16:31 Heat of formation + Delta-G solvation = 92.219561 kcal Electronic energy + Delta-G solvation = -20588.766534 eV Core-core repulsion = 17178.869400 eV Total energy + Delta-G solvation = -3409.897134 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 280.132 amu Computer time = 2.32 seconds Orbital eigenvalues (eV) -41.84743 -39.90037 -36.87369 -34.93465 -34.74338 -33.74133 -32.98983 -31.00956 -29.97959 -29.06680 -26.78272 -25.10449 -22.94940 -22.13157 -21.44752 -20.59289 -19.14107 -17.81799 -17.35189 -17.03326 -16.38708 -16.10540 -15.99825 -15.09662 -14.60215 -14.56658 -14.41662 -13.97728 -13.79568 -13.78089 -13.32046 -13.19153 -12.96703 -12.78589 -12.50094 -12.09417 -12.06013 -11.92619 -11.29477 -11.25831 -10.92324 -10.90423 -10.61685 -10.28845 -10.16869 -9.64405 -9.43680 -9.18234 -8.76198 -7.27849 -5.80702 -3.17554 0.23780 1.56748 2.02927 2.26038 2.33046 2.77110 3.10950 3.34619 3.36852 3.42849 3.49637 4.10502 4.40396 4.42956 4.55419 4.65315 4.80429 4.81354 4.92994 4.97595 5.08480 5.25869 5.44845 5.48249 5.48673 5.56331 5.69372 5.95407 6.06073 6.33443 6.37728 6.61300 6.66468 6.91950 7.17458 7.87851 7.94210 8.37681 9.15801 9.87655 10.06615 11.37391 Molecular weight = 280.13amu Principal moments of inertia in cm(-1) A = 0.026854 B = 0.002851 C = 0.002722 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1042.442046 B = 9817.806396 C =10283.242503 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.094 4.094 2 C 0.087 3.913 3 N -0.277 5.277 4 O 0.027 5.973 5 N -0.263 5.263 6 C 0.096 3.904 7 C -0.080 4.080 8 C 0.514 3.486 9 O -0.526 6.526 10 N -0.718 5.718 11 C 0.138 3.862 12 C -0.195 4.195 13 C -0.116 4.116 14 C 0.166 3.834 15 N -0.751 5.751 16 C -0.248 4.248 17 H 0.091 0.909 18 C 0.006 3.994 19 N -0.932 5.932 20 Si 0.886 3.114 21 H -0.284 1.284 22 H -0.290 1.290 23 H -0.277 1.277 24 H 0.097 0.903 25 H 0.093 0.907 26 H 0.094 0.906 27 H 0.130 0.870 28 H 0.125 0.875 29 H 0.402 0.598 30 H 0.093 0.907 31 H 0.074 0.926 32 H 0.114 0.886 33 H 0.114 0.886 34 H 0.037 0.963 35 H 0.043 0.957 36 H 0.362 0.638 37 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.082 2.003 25.480 26.273 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.095 4.095 3 N -0.023 5.023 4 O -0.114 6.114 5 N -0.005 5.005 6 C -0.088 4.088 7 C -0.121 4.121 8 C 0.297 3.703 9 O -0.401 6.401 10 N -0.370 5.370 11 C 0.016 3.984 12 C -0.215 4.215 13 C -0.135 4.135 14 C 0.040 3.960 15 N -0.397 5.397 16 C -0.378 4.378 17 H 0.109 0.891 18 C -0.190 4.190 19 N -0.579 5.579 20 Si 0.716 3.284 21 H -0.210 1.210 22 H -0.216 1.216 23 H -0.203 1.203 24 H 0.116 0.884 25 H 0.112 0.888 26 H 0.113 0.887 27 H 0.148 0.852 28 H 0.143 0.857 29 H 0.236 0.764 30 H 0.111 0.889 31 H 0.092 0.908 32 H 0.132 0.868 33 H 0.132 0.868 34 H 0.055 0.945 35 H 0.060 0.940 36 H 0.195 0.805 37 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 7.370 3.598 24.657 25.986 hybrid contribution -0.230 -2.122 -0.091 2.136 sum 7.140 1.476 24.567 25.626 Atomic orbital electron populations 1.20606 0.84094 1.05897 1.04633 1.24535 1.00382 0.88758 0.95850 1.79928 0.89004 1.19550 1.13784 1.93396 1.20287 1.13147 1.84565 1.79890 1.17369 0.91592 1.11667 1.23750 0.90099 0.97687 0.97248 1.20352 1.05189 0.89279 0.97313 1.20036 0.77878 0.82318 0.90080 1.90827 1.49060 1.54409 1.45826 1.45921 1.67503 1.13811 1.09718 1.20635 1.02440 0.93568 0.81728 1.22608 0.98050 0.96171 1.04622 1.23340 0.94598 1.00573 0.94997 1.19977 0.97732 0.93645 0.84687 1.42611 1.75827 1.14745 1.06479 1.19055 1.32429 0.97916 0.88406 0.89108 1.24684 1.00732 0.97861 0.95744 1.69700 1.49718 1.36515 1.02006 0.86527 0.78560 0.85990 0.77335 1.21018 1.21631 1.20286 0.88423 0.88830 0.88725 0.85179 0.85656 0.76395 0.88906 0.90783 0.86846 0.86817 0.94499 0.93980 0.80525 0.92946 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.51 10.05 36.01 0.36 -0.15 16 2 C 0.09 0.84 7.19 -82.38 -0.59 0.25 16 3 N -0.28 -3.46 12.98 33.74 0.44 -3.02 16 4 O 0.03 0.39 13.71 12.02 0.16 0.55 16 5 N -0.26 -3.34 12.98 33.74 0.44 -2.90 16 6 C 0.10 0.94 5.68 -82.38 -0.47 0.47 16 7 C -0.08 -0.46 5.87 -29.03 -0.17 -0.63 16 8 C 0.51 5.08 7.82 -10.98 -0.09 5.00 16 9 O -0.53 -8.12 16.03 5.56 0.09 -8.04 16 10 N -0.72 -5.93 5.55 -61.47 -0.34 -6.27 16 11 C 0.14 1.63 5.76 -5.19 -0.03 1.60 16 12 C -0.20 -2.13 9.63 -36.02 -0.35 -2.48 16 13 C -0.12 -1.57 9.63 -36.02 -0.35 -1.91 16 14 C 0.17 3.02 6.35 -5.19 -0.03 2.99 16 15 N -0.75 -17.55 5.40 -61.09 -0.33 -17.88 16 16 C -0.25 -7.02 10.47 -15.06 -0.16 -7.17 16 17 H 0.09 2.74 8.06 -52.49 -0.42 2.32 16 18 C 0.01 0.17 5.50 -17.43 -0.10 0.08 16 19 N -0.93 -29.27 13.97 55.49 0.78 -28.49 16 20 Si 0.89 21.88 27.74 -169.99 -4.71 17.17 16 21 H -0.28 -6.90 7.11 56.52 0.40 -6.49 16 22 H -0.29 -7.28 7.11 56.52 0.40 -6.88 16 23 H -0.28 -6.42 6.52 56.52 0.37 -6.05 16 24 H 0.10 0.26 8.14 -51.93 -0.42 -0.17 16 25 H 0.09 0.52 8.14 -51.93 -0.42 0.10 16 26 H 0.09 0.42 7.77 -51.93 -0.40 0.02 16 27 H 0.13 0.20 7.78 -51.93 -0.40 -0.21 16 28 H 0.13 0.43 8.14 -51.93 -0.42 0.01 16 29 H 0.40 1.81 8.46 -40.82 -0.35 1.47 16 30 H 0.09 1.31 5.30 -51.93 -0.28 1.04 16 31 H 0.07 0.98 8.14 -51.93 -0.42 0.56 16 32 H 0.11 0.96 8.06 -52.48 -0.42 0.54 16 33 H 0.11 1.41 8.06 -52.48 -0.42 0.98 16 34 H 0.04 0.68 8.14 -51.93 -0.42 0.26 16 35 H 0.04 0.79 5.30 -51.93 -0.27 0.52 16 36 H 0.36 8.21 5.52 -40.82 -0.23 7.99 16 37 H 0.26 7.76 8.31 -40.82 -0.34 7.42 16 LS Contribution 326.35 15.07 4.92 4.92 Total: -1.00 -37.50 326.35 -5.01 -42.50 By element: Atomic # 1 Polarization: 7.90 SS G_CDS: -4.48 Total: 3.42 kcal Atomic # 6 Polarization: 0.00 SS G_CDS: -1.96 Total: -1.96 kcal Atomic # 7 Polarization: -59.55 SS G_CDS: 0.98 Total: -58.57 kcal Atomic # 8 Polarization: -7.74 SS G_CDS: 0.25 Total: -7.48 kcal Atomic # 14 Polarization: 21.88 SS G_CDS: -4.71 Total: 17.17 kcal Total LS contribution 4.92 Total: 4.92 kcal Total: -37.50 -5.01 -42.50 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001497713146.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 134.723 kcal (2) G-P(sol) polarization free energy of solvation -37.498 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 97.225 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.005 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.504 kcal (6) G-S(sol) free energy of system = (1) + (5) 92.220 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.32 seconds