Wall clock time and date at job start Fri Apr 10 2020 17:16:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 N 1.29942 * 125.30785 * 2 1 4 4 O 1.41878 * 107.41694 * 180.02562 * 3 2 1 5 5 N 1.41881 * 106.38521 * 359.78245 * 4 3 2 6 6 C 1.29949 * 107.41398 * 0.36663 * 5 4 3 7 7 C 1.50701 * 125.30658 * 179.89125 * 6 5 4 8 8 C 1.50707 * 109.46796 * 269.69672 * 7 6 5 9 9 O 1.21272 * 120.00302 * 359.97438 * 8 7 6 10 10 N 1.34777 * 119.99431 * 179.97438 * 8 7 6 11 11 C 1.46505 * 119.99844 * 180.02562 * 10 8 7 12 12 C 1.50701 * 109.47208 * 180.02562 * 11 10 8 13 13 C 1.30993 * 120.00239 * 127.15517 * 12 11 10 14 14 C 1.50700 * 120.00033 * 7.55330 * 13 12 11 15 15 N 1.46501 * 109.46758 * 127.00514 * 14 13 12 16 16 C 1.36937 * 119.99830 * 180.02562 * 15 14 13 17 17 H 1.08002 * 120.00505 * 359.97438 * 16 15 14 18 18 C 1.38811 * 119.99996 * 180.02562 * 16 15 14 19 19 N 1.31625 * 120.00189 * 180.02562 * 18 16 15 20 20 Si 1.86799 * 120.00122 * 359.97438 * 18 16 15 21 21 H 1.48499 * 109.46892 * 90.00475 * 20 18 16 22 22 H 1.48496 * 109.47081 * 210.00321 * 20 18 16 23 23 H 1.48496 * 109.47136 * 330.00589 * 20 18 16 24 24 H 1.09000 * 109.46741 * 269.99817 * 1 2 3 25 25 H 1.09000 * 109.46717 * 29.99600 * 1 2 3 26 26 H 1.08998 * 109.47518 * 149.99398 * 1 2 3 27 27 H 1.08994 * 109.47394 * 149.69372 * 7 6 5 28 28 H 1.09002 * 109.46687 * 29.68871 * 7 6 5 29 29 H 0.97003 * 120.00260 * 359.97438 * 10 8 7 30 30 H 1.09001 * 109.46552 * 299.99752 * 11 10 8 31 31 H 1.08994 * 109.47238 * 59.99544 * 11 10 8 32 32 H 1.08003 * 119.99323 * 307.15535 * 12 11 10 33 33 H 1.08005 * 119.99942 * 187.56174 * 13 12 11 34 34 H 1.08995 * 109.47607 * 247.00858 * 14 13 12 35 35 H 1.09001 * 109.47213 * 7.01353 * 14 13 12 36 36 H 0.96995 * 120.00512 * 0.02562 * 15 14 13 37 37 H 0.96993 * 120.00474 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2581 1.0604 0.0000 4 8 3.6082 0.6245 -0.0006 5 7 3.5710 -0.7938 0.0042 6 6 2.3213 -1.1500 -0.0006 7 6 1.8208 -2.5714 -0.0004 8 6 1.6530 -3.0451 -1.4212 9 8 1.9137 -2.3016 -2.3431 10 7 1.2133 -4.2952 -1.6672 11 6 1.0507 -4.7559 -3.0484 12 6 0.5501 -6.1773 -3.0482 13 6 -0.5204 -6.4949 -3.7330 14 6 -1.1528 -5.4839 -4.6546 15 7 -1.3052 -6.0682 -5.9893 16 6 -1.8602 -5.3300 -7.0005 17 1 -2.1858 -4.3173 -6.8139 18 6 -2.0051 -5.8838 -8.2651 19 7 -2.5381 -5.1742 -9.2371 20 14 -1.4426 -7.6356 -8.5878 21 1 -2.5634 -8.5724 -8.3208 22 1 -1.0156 -7.7654 -10.0041 23 1 -0.3017 -7.9615 -7.6949 24 1 -0.3633 0.0000 1.0277 25 1 -0.3633 0.8900 -0.5138 26 1 -0.3634 -0.8899 -0.5139 27 1 0.8610 -2.6187 0.5141 28 1 2.5400 -3.2097 0.5128 29 1 1.0051 -4.8900 -0.9298 30 1 0.3314 -4.1179 -3.5619 31 1 2.0106 -4.7084 -3.5626 32 1 1.0740 -6.9342 -2.4833 33 1 -0.9500 -7.4812 -3.6372 34 1 -2.1318 -5.2017 -4.2674 35 1 -0.5175 -4.6003 -4.7152 36 1 -1.0132 -6.9778 -6.1569 37 1 -2.6390 -5.5609 -10.1209 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001497713146.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:16:30 Heat of formation + Delta-G solvation = 61.308710 kcal Electronic energy + Delta-G solvation = -20590.106929 eV Core-core repulsion = 17178.869400 eV Total energy + Delta-G solvation = -3411.237529 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 280.132 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -42.63296 -40.75379 -38.08486 -36.22458 -35.63983 -34.56239 -34.37897 -32.83994 -30.78796 -29.66153 -28.11982 -26.37960 -24.02513 -23.73038 -22.22047 -21.38469 -20.48801 -19.28832 -18.12876 -18.05464 -17.42462 -16.96805 -16.82935 -16.51010 -15.90694 -15.53060 -15.35775 -15.18669 -14.94178 -14.63841 -14.27955 -14.24946 -14.17019 -13.86405 -13.55551 -13.15040 -13.04270 -12.88965 -12.72759 -12.60305 -12.20256 -12.14782 -11.87213 -11.67952 -11.63277 -11.16090 -11.04242 -10.35784 -9.96371 -9.25912 -8.04533 -5.39247 -0.57475 0.82763 1.09159 1.37862 1.42683 1.47582 1.50352 1.51533 2.02007 2.34740 2.48088 2.80528 3.26884 3.46115 3.76648 3.84245 3.88525 3.91908 4.14220 4.16253 4.33450 4.39286 4.50122 4.63053 4.63203 4.71095 4.87128 4.93117 5.08515 5.09254 5.34493 5.59686 5.71527 5.80498 5.89107 6.19348 6.50829 7.06182 7.20645 7.81026 8.01239 9.17004 Molecular weight = 280.13amu Principal moments of inertia in cm(-1) A = 0.026854 B = 0.002851 C = 0.002722 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1042.442046 B = 9817.806396 C =10283.242503 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.095 4.095 2 C 0.096 3.904 3 N -0.310 5.310 4 O -0.020 6.020 5 N -0.293 5.293 6 C 0.104 3.896 7 C -0.071 4.071 8 C 0.513 3.487 9 O -0.590 6.590 10 N -0.697 5.697 11 C 0.136 3.864 12 C -0.152 4.152 13 C -0.139 4.139 14 C 0.161 3.839 15 N -0.755 5.755 16 C -0.241 4.241 17 H 0.053 0.947 18 C -0.067 4.067 19 N -0.985 5.985 20 Si 0.962 3.038 21 H -0.273 1.273 22 H -0.297 1.297 23 H -0.248 1.248 24 H 0.135 0.865 25 H 0.088 0.912 26 H 0.110 0.890 27 H 0.186 0.814 28 H 0.159 0.841 29 H 0.426 0.574 30 H 0.063 0.937 31 H 0.058 0.942 32 H 0.157 0.843 33 H 0.134 0.866 34 H 0.032 0.968 35 H 0.034 0.966 36 H 0.368 0.632 37 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.040 -1.290 28.456 29.119 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.087 4.087 3 N -0.059 5.059 4 O -0.153 6.153 5 N -0.038 5.038 6 C -0.080 4.080 7 C -0.111 4.111 8 C 0.298 3.702 9 O -0.470 6.470 10 N -0.350 5.350 11 C 0.012 3.988 12 C -0.171 4.171 13 C -0.158 4.158 14 C 0.036 3.964 15 N -0.401 5.401 16 C -0.372 4.372 17 H 0.071 0.929 18 C -0.258 4.258 19 N -0.635 5.635 20 Si 0.788 3.212 21 H -0.199 1.199 22 H -0.224 1.224 23 H -0.173 1.173 24 H 0.153 0.847 25 H 0.107 0.893 26 H 0.128 0.872 27 H 0.203 0.797 28 H 0.176 0.824 29 H 0.265 0.735 30 H 0.081 0.919 31 H 0.077 0.923 32 H 0.174 0.826 33 H 0.152 0.848 34 H 0.050 0.950 35 H 0.051 0.949 36 H 0.202 0.798 37 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges 7.372 0.293 27.738 28.702 hybrid contribution -0.285 -1.009 -0.934 1.404 sum 7.087 -0.716 26.804 27.735 Atomic orbital electron populations 1.20902 0.80872 1.06411 1.07108 1.25316 1.02152 0.88079 0.93115 1.79892 0.88730 1.21047 1.16281 1.93358 1.21682 1.14161 1.86080 1.79832 1.19304 0.91052 1.13655 1.24463 0.89273 0.99617 0.94689 1.20638 1.08798 0.86825 0.94813 1.20709 0.76400 0.81934 0.91117 1.90824 1.51855 1.56167 1.48181 1.45641 1.66535 1.13818 1.09013 1.20419 1.00821 0.94099 0.83448 1.22820 0.95953 0.95909 1.02415 1.23062 0.96252 1.00320 0.96136 1.20086 0.97862 0.94982 0.83469 1.42623 1.75337 1.14730 1.07374 1.19041 1.31453 0.96811 0.89898 0.92906 1.25612 1.01606 1.03127 0.95458 1.69901 1.52020 1.39047 1.02560 0.85312 0.79113 0.79757 0.77016 1.19867 1.22414 1.17284 0.84663 0.89283 0.87192 0.79721 0.82375 0.73541 0.91872 0.92334 0.82589 0.84810 0.95046 0.94876 0.79803 0.93233 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.76 10.05 71.24 0.72 -0.05 16 2 C 0.10 1.74 7.19 43.49 0.31 2.06 16 3 N -0.31 -7.98 12.98 -47.15 -0.61 -8.59 16 4 O -0.02 -0.59 13.71 70.15 0.96 0.37 16 5 N -0.29 -7.50 12.98 -47.15 -0.61 -8.11 16 6 C 0.10 1.87 5.68 43.49 0.25 2.11 16 7 C -0.07 -0.51 5.87 29.10 0.17 -0.34 16 8 C 0.51 8.81 7.82 87.66 0.69 9.49 16 9 O -0.59 -18.10 16.03 -3.01 -0.05 -18.15 16 10 N -0.70 -8.98 5.55 -466.78 -2.59 -11.57 16 11 C 0.14 2.90 5.76 85.63 0.49 3.39 16 12 C -0.15 -2.66 9.63 25.65 0.25 -2.41 16 13 C -0.14 -3.29 9.63 25.65 0.25 -3.04 16 14 C 0.16 5.76 6.35 85.63 0.54 6.31 16 15 N -0.75 -34.76 5.40 -347.18 -1.87 -36.63 16 16 C -0.24 -13.92 10.47 84.03 0.88 -13.04 16 17 H 0.05 3.36 8.06 -2.91 -0.02 3.34 16 18 C -0.07 -3.96 5.50 84.86 0.47 -3.49 16 19 N -0.99 -63.82 13.97 21.65 0.30 -63.52 16 20 Si 0.96 44.97 27.74 68.60 1.90 46.87 16 21 H -0.27 -12.23 7.11 99.48 0.71 -11.52 16 22 H -0.30 -14.18 7.11 99.48 0.71 -13.48 16 23 H -0.25 -10.34 6.52 99.48 0.65 -9.69 16 24 H 0.14 0.12 8.14 -2.39 -0.02 0.10 16 25 H 0.09 0.86 8.14 -2.39 -0.02 0.84 16 26 H 0.11 0.59 7.77 -2.39 -0.02 0.57 16 27 H 0.19 -0.66 7.78 -2.39 -0.02 -0.68 16 28 H 0.16 0.25 8.14 -2.39 -0.02 0.23 16 29 H 0.43 1.47 8.46 -92.71 -0.78 0.69 16 30 H 0.06 1.77 5.30 -2.39 -0.01 1.76 16 31 H 0.06 1.48 8.14 -2.39 -0.02 1.46 16 32 H 0.16 1.58 8.06 -2.91 -0.02 1.56 16 33 H 0.13 2.72 8.06 -2.91 -0.02 2.70 16 34 H 0.03 1.15 8.14 -2.39 -0.02 1.13 16 35 H 0.03 1.26 5.30 -2.39 -0.01 1.25 16 36 H 0.37 15.85 5.52 -92.71 -0.51 15.34 16 37 H 0.26 15.90 8.31 -92.71 -0.77 15.13 16 Total: -1.00 -89.81 326.35 2.20 -87.61 By element: Atomic # 1 Polarization: 10.97 SS G_CDS: -0.24 Total: 10.74 kcal Atomic # 6 Polarization: -4.03 SS G_CDS: 5.01 Total: 0.98 kcal Atomic # 7 Polarization: -123.04 SS G_CDS: -5.39 Total: -128.42 kcal Atomic # 8 Polarization: -18.69 SS G_CDS: 0.91 Total: -17.78 kcal Atomic # 14 Polarization: 44.97 SS G_CDS: 1.90 Total: 46.87 kcal Total: -89.81 2.20 -87.61 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001497713146.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 148.918 kcal (2) G-P(sol) polarization free energy of solvation -89.815 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 59.104 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.205 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.610 kcal (6) G-S(sol) free energy of system = (1) + (5) 61.309 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds