Wall clock time and date at job start Fri Apr 10 2020 17:17:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.38575 * 119.96207 * 2 1 4 4 C 1.38824 * 118.06343 * 179.72840 * 3 2 1 5 5 C 1.39721 * 117.90265 * 0.52516 * 4 3 2 6 6 C 1.48146 * 120.18430 * 179.76501 * 5 4 3 7 7 O 1.21521 * 119.99978 * 359.72082 * 6 5 4 8 8 N 1.34777 * 119.99960 * 179.72617 * 6 5 4 9 9 C 1.46506 * 119.99873 * 179.97438 * 8 6 5 10 10 C 1.53002 * 109.47035 * 179.97438 * 9 8 6 11 11 H 1.09000 * 109.47173 * 294.99899 * 10 9 8 12 12 C 1.52994 * 109.46985 * 174.99989 * 10 9 8 13 13 O 1.42903 * 109.47353 * 304.99249 * 12 10 9 14 14 N 1.46499 * 109.47138 * 54.99480 * 10 9 8 15 15 C 1.36939 * 120.00222 * 205.00061 * 14 10 9 16 16 H 1.08001 * 119.99346 * 0.02562 * 15 14 10 17 17 C 1.38806 * 120.00137 * 180.02562 * 15 14 10 18 18 N 1.31616 * 119.99861 * 0.02562 * 17 15 14 19 19 Si 1.86801 * 119.99831 * 179.97438 * 17 15 14 20 20 H 1.48502 * 109.46991 * 90.00019 * 19 17 15 21 21 H 1.48501 * 109.47151 * 209.99727 * 19 17 15 22 22 H 1.48497 * 109.47313 * 330.00067 * 19 17 15 23 23 N 1.32783 * 119.63119 * 359.48574 * 5 4 3 24 24 N 1.28356 * 122.02757 * 0.25348 * 23 5 4 25 25 H 1.09002 * 109.47009 * 269.97184 * 1 2 3 26 26 H 1.08998 * 109.47027 * 29.97973 * 1 2 3 27 27 H 1.09000 * 109.46806 * 149.97643 * 1 2 3 28 28 H 1.07998 * 120.96538 * 359.97438 * 3 2 1 29 29 H 1.08003 * 121.04886 * 180.29458 * 4 3 2 30 30 H 0.96999 * 120.00047 * 359.97438 * 8 6 5 31 31 H 1.09004 * 109.47073 * 299.99562 * 9 8 6 32 32 H 1.09000 * 109.47212 * 59.99645 * 9 8 6 33 33 H 1.08992 * 109.47829 * 65.00014 * 12 10 9 34 34 H 1.09007 * 109.46887 * 184.99813 * 12 10 9 35 35 H 0.96696 * 114.00338 * 179.97438 * 13 12 10 36 36 H 0.97004 * 119.99694 * 25.00798 * 14 10 9 37 37 H 0.97008 * 119.99512 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1991 1.2006 0.0000 4 6 3.5866 1.1546 0.0058 5 6 4.1992 -0.1012 0.0000 6 6 5.6767 -0.2091 0.0005 7 8 6.3594 0.7962 0.0009 8 7 6.2638 -1.4223 0.0005 9 6 7.7249 -1.5291 0.0004 10 6 8.1285 -3.0049 0.0010 11 1 7.8055 -3.4695 0.9326 12 6 9.6491 -3.1179 -0.1248 13 8 10.0850 -2.4085 -1.2862 14 7 7.4929 -3.6854 -1.1300 15 6 7.2654 -5.0347 -1.0773 16 1 7.5542 -5.5971 -0.2017 17 6 6.6637 -5.6795 -2.1492 18 7 6.3123 -4.9941 -3.2164 19 14 6.3541 -7.5203 -2.0774 20 1 5.0130 -7.7742 -1.4923 21 1 6.4106 -8.0856 -3.4494 22 1 7.3923 -8.1644 -1.2334 23 7 3.4498 -1.1973 -0.0004 24 7 2.1673 -1.1450 -0.0004 25 1 -0.3633 -0.0005 1.0277 26 1 -0.3633 0.8902 -0.5135 27 1 -0.3633 -0.8898 -0.5142 28 1 1.6744 2.1445 -0.0004 29 1 4.1740 2.0609 0.0108 30 1 5.7189 -2.2248 0.0004 31 1 8.1247 -1.0431 -0.8896 32 1 8.1248 -1.0430 0.8904 33 1 10.1197 -2.6899 0.7603 34 1 9.9293 -4.1675 -0.2137 35 1 11.0410 -2.4372 -1.4288 36 1 7.2334 -3.1801 -1.9164 37 1 5.8915 -5.4448 -3.9653 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001507195147.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:17:02 Heat of formation + Delta-G solvation = -15.959550 kcal Electronic energy + Delta-G solvation = -21479.840601 eV Core-core repulsion = 18065.252468 eV Total energy + Delta-G solvation = -3414.588133 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 280.132 amu Computer time = 1.60 seconds Orbital eigenvalues (eV) -41.20548 -39.14553 -37.10097 -34.93140 -34.20136 -33.40817 -33.10874 -31.32457 -28.96516 -28.05679 -25.63399 -24.78160 -23.63712 -23.09784 -20.73938 -20.05575 -18.15034 -17.63285 -17.22318 -16.56749 -15.78483 -15.64333 -15.54854 -14.98412 -14.65322 -14.33609 -13.94881 -13.53449 -13.39610 -13.33615 -13.08184 -12.90688 -12.75322 -12.59511 -11.96591 -11.50697 -11.39263 -10.84063 -10.78375 -10.56833 -10.38484 -10.05915 -9.90744 -9.82440 -9.76095 -9.71035 -9.34307 -8.92096 -8.63478 -6.97703 -5.74378 -3.04872 0.42431 0.68238 2.76732 3.27120 3.45749 3.50130 3.52183 3.69091 3.83905 4.26090 4.43514 4.57654 4.60905 4.82365 4.94488 4.96781 5.21167 5.26575 5.42709 5.54559 5.56541 5.60241 5.64750 5.84014 5.89489 6.03105 6.04913 6.06926 6.35885 6.53052 6.74451 6.83624 7.68924 7.84334 8.22334 8.40549 8.42456 8.57641 9.54576 10.08864 10.45031 11.47311 Molecular weight = 280.13amu Principal moments of inertia in cm(-1) A = 0.013933 B = 0.005184 C = 0.003947 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2009.068979 B = 5399.924566 C = 7091.871912 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.102 4.102 2 C 0.077 3.923 3 C -0.128 4.128 4 C -0.064 4.064 5 C 0.022 3.978 6 C 0.570 3.430 7 O -0.545 6.545 8 N -0.686 5.686 9 C 0.115 3.885 10 C 0.165 3.835 11 H 0.067 0.933 12 C 0.060 3.940 13 O -0.560 6.560 14 N -0.712 5.712 15 C -0.249 4.249 16 H 0.070 0.930 17 C -0.006 4.006 18 N -0.925 5.925 19 Si 0.906 3.094 20 H -0.289 1.289 21 H -0.292 1.292 22 H -0.283 1.283 23 N -0.193 5.193 24 N -0.238 5.238 25 H 0.085 0.915 26 H 0.080 0.920 27 H 0.085 0.915 28 H 0.155 0.845 29 H 0.162 0.838 30 H 0.422 0.578 31 H 0.080 0.920 32 H 0.065 0.935 33 H 0.027 0.973 34 H 0.050 0.950 35 H 0.364 0.636 36 H 0.389 0.611 37 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.133 12.598 8.477 16.376 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C -0.066 4.066 3 C -0.156 4.156 4 C -0.093 4.093 5 C -0.124 4.124 6 C 0.352 3.648 7 O -0.422 6.422 8 N -0.337 5.337 9 C -0.009 4.009 10 C 0.054 3.946 11 H 0.085 0.915 12 C -0.022 4.022 13 O -0.364 6.364 14 N -0.354 5.354 15 C -0.379 4.379 16 H 0.088 0.912 17 C -0.203 4.203 18 N -0.572 5.572 19 Si 0.737 3.263 20 H -0.216 1.216 21 H -0.219 1.219 22 H -0.209 1.209 23 N -0.039 5.039 24 N -0.083 5.083 25 H 0.104 0.896 26 H 0.099 0.901 27 H 0.104 0.896 28 H 0.173 0.827 29 H 0.179 0.821 30 H 0.260 0.740 31 H 0.098 0.902 32 H 0.083 0.917 33 H 0.045 0.955 34 H 0.068 0.932 35 H 0.208 0.792 36 H 0.223 0.777 37 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -6.335 11.547 8.446 15.646 hybrid contribution 0.246 0.124 -0.283 0.395 sum -6.090 11.671 8.163 15.489 Atomic orbital electron populations 1.20723 0.87222 1.04336 1.03739 1.23125 0.99354 0.90630 0.93501 1.22270 0.94255 1.00002 0.99118 1.22429 0.94986 0.99201 0.92730 1.22955 0.96831 0.91926 1.00693 1.17526 0.85022 0.84368 0.77854 1.90759 1.63540 1.36263 1.51661 1.45918 1.08787 1.08357 1.70591 1.21683 0.78545 0.98312 1.02320 1.20594 0.90147 0.90229 0.93651 0.91507 1.23039 0.97831 0.95388 0.85907 1.86569 1.26545 1.76084 1.47161 1.42358 1.70529 1.06105 1.16408 1.19190 1.33522 0.84328 1.00907 0.91174 1.24733 1.01289 0.97849 0.96398 1.69681 1.46319 1.34759 1.06422 0.86223 0.78024 0.85421 0.76641 1.21583 1.21868 1.20860 1.73365 0.99528 1.25898 1.05124 1.73180 1.01100 1.24379 1.09637 0.89623 0.90124 0.89581 0.82744 0.82081 0.73982 0.90165 0.91689 0.95503 0.93210 0.79171 0.77667 0.93475 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.75 10.19 36.01 0.37 -0.38 16 2 C 0.08 0.89 6.87 -82.32 -0.57 0.33 16 3 C -0.13 -1.26 9.86 -39.24 -0.39 -1.64 16 4 C -0.06 -0.80 9.73 -38.81 -0.38 -1.18 16 5 C 0.02 0.37 6.83 -82.83 -0.57 -0.20 16 6 C 0.57 10.36 7.82 -12.19 -0.10 10.27 16 7 O -0.54 -10.61 16.39 5.35 0.09 -10.53 16 8 N -0.69 -12.83 5.38 -61.15 -0.33 -13.16 16 9 C 0.12 2.11 5.12 -4.04 -0.02 2.09 16 10 C 0.17 3.22 2.84 -67.93 -0.19 3.03 16 11 H 0.07 1.25 8.08 -51.93 -0.42 0.83 16 12 C 0.06 1.04 6.86 37.15 0.25 1.30 16 13 O -0.56 -10.04 12.64 -35.23 -0.45 -10.49 16 14 N -0.71 -17.54 4.51 -53.43 -0.24 -17.78 16 15 C -0.25 -6.73 9.93 -15.06 -0.15 -6.88 16 16 H 0.07 1.82 7.83 -52.49 -0.41 1.41 16 17 C -0.01 -0.16 5.50 -17.43 -0.10 -0.26 16 18 N -0.92 -28.12 13.06 55.49 0.72 -27.39 16 19 Si 0.91 22.37 29.55 -169.99 -5.02 17.35 16 20 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 21 H -0.29 -7.33 7.11 56.52 0.40 -6.93 16 22 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 23 N -0.19 -3.43 10.75 33.32 0.36 -3.07 16 24 N -0.24 -3.81 11.43 33.63 0.38 -3.42 16 25 H 0.09 0.51 8.14 -51.93 -0.42 0.09 16 26 H 0.08 0.39 8.09 -51.93 -0.42 -0.03 16 27 H 0.09 0.68 8.14 -51.93 -0.42 0.26 16 28 H 0.15 0.86 8.06 -52.49 -0.42 0.44 16 29 H 0.16 1.72 7.72 -52.48 -0.41 1.31 16 30 H 0.42 8.41 7.49 -40.82 -0.31 8.11 16 31 H 0.08 1.62 7.40 -51.93 -0.38 1.23 16 32 H 0.06 1.07 8.14 -51.93 -0.42 0.64 16 33 H 0.03 0.38 8.14 -51.93 -0.42 -0.04 16 34 H 0.05 0.92 8.14 -51.93 -0.42 0.50 16 35 H 0.36 4.68 9.12 45.56 0.42 5.09 16 36 H 0.39 10.64 7.80 -40.82 -0.32 10.33 16 37 H 0.26 7.56 8.31 -40.82 -0.34 7.22 16 LS Contribution 327.17 15.07 4.93 4.93 Total: -1.00 -34.41 327.17 -5.30 -39.71 By element: Atomic # 1 Polarization: 21.30 SS G_CDS: -3.92 Total: 17.38 kcal Atomic # 6 Polarization: 8.30 SS G_CDS: -1.83 Total: 6.47 kcal Atomic # 7 Polarization: -65.72 SS G_CDS: 0.90 Total: -64.83 kcal Atomic # 8 Polarization: -20.66 SS G_CDS: -0.36 Total: -21.01 kcal Atomic # 14 Polarization: 22.37 SS G_CDS: -5.02 Total: 17.35 kcal Total LS contribution 4.93 Total: 4.93 kcal Total: -34.41 -5.30 -39.71 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001507195147.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.754 kcal (2) G-P(sol) polarization free energy of solvation -34.411 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.658 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.302 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.713 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.960 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.60 seconds