Wall clock time and date at job start Fri Apr 10 2020 17:16:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.38575 * 119.96207 * 2 1 4 4 C 1.38824 * 118.06343 * 179.72840 * 3 2 1 5 5 C 1.39721 * 117.90265 * 0.52516 * 4 3 2 6 6 C 1.48146 * 120.18430 * 179.76501 * 5 4 3 7 7 O 1.21521 * 119.99978 * 359.72082 * 6 5 4 8 8 N 1.34777 * 119.99960 * 179.72617 * 6 5 4 9 9 C 1.46506 * 119.99873 * 179.97438 * 8 6 5 10 10 C 1.53002 * 109.47035 * 179.97438 * 9 8 6 11 11 H 1.09000 * 109.47173 * 294.99899 * 10 9 8 12 12 C 1.52994 * 109.46985 * 174.99989 * 10 9 8 13 13 O 1.42903 * 109.47353 * 304.99249 * 12 10 9 14 14 N 1.46499 * 109.47138 * 54.99480 * 10 9 8 15 15 C 1.36939 * 120.00222 * 205.00061 * 14 10 9 16 16 H 1.08001 * 119.99346 * 0.02562 * 15 14 10 17 17 C 1.38806 * 120.00137 * 180.02562 * 15 14 10 18 18 N 1.31616 * 119.99861 * 0.02562 * 17 15 14 19 19 Si 1.86801 * 119.99831 * 179.97438 * 17 15 14 20 20 H 1.48502 * 109.46991 * 90.00019 * 19 17 15 21 21 H 1.48501 * 109.47151 * 209.99727 * 19 17 15 22 22 H 1.48497 * 109.47313 * 330.00067 * 19 17 15 23 23 N 1.32783 * 119.63119 * 359.48574 * 5 4 3 24 24 N 1.28356 * 122.02757 * 0.25348 * 23 5 4 25 25 H 1.09002 * 109.47009 * 269.97184 * 1 2 3 26 26 H 1.08998 * 109.47027 * 29.97973 * 1 2 3 27 27 H 1.09000 * 109.46806 * 149.97643 * 1 2 3 28 28 H 1.07998 * 120.96538 * 359.97438 * 3 2 1 29 29 H 1.08003 * 121.04886 * 180.29458 * 4 3 2 30 30 H 0.96999 * 120.00047 * 359.97438 * 8 6 5 31 31 H 1.09004 * 109.47073 * 299.99562 * 9 8 6 32 32 H 1.09000 * 109.47212 * 59.99645 * 9 8 6 33 33 H 1.08992 * 109.47829 * 65.00014 * 12 10 9 34 34 H 1.09007 * 109.46887 * 184.99813 * 12 10 9 35 35 H 0.96696 * 114.00338 * 179.97438 * 13 12 10 36 36 H 0.97004 * 119.99694 * 25.00798 * 14 10 9 37 37 H 0.97008 * 119.99512 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1991 1.2006 0.0000 4 6 3.5866 1.1546 0.0058 5 6 4.1992 -0.1012 0.0000 6 6 5.6767 -0.2091 0.0005 7 8 6.3594 0.7962 0.0009 8 7 6.2638 -1.4223 0.0005 9 6 7.7249 -1.5291 0.0004 10 6 8.1285 -3.0049 0.0010 11 1 7.8055 -3.4695 0.9326 12 6 9.6491 -3.1179 -0.1248 13 8 10.0850 -2.4085 -1.2862 14 7 7.4929 -3.6854 -1.1300 15 6 7.2654 -5.0347 -1.0773 16 1 7.5542 -5.5971 -0.2017 17 6 6.6637 -5.6795 -2.1492 18 7 6.3123 -4.9941 -3.2164 19 14 6.3541 -7.5203 -2.0774 20 1 5.0130 -7.7742 -1.4923 21 1 6.4106 -8.0856 -3.4494 22 1 7.3923 -8.1644 -1.2334 23 7 3.4498 -1.1973 -0.0004 24 7 2.1673 -1.1450 -0.0004 25 1 -0.3633 -0.0005 1.0277 26 1 -0.3633 0.8902 -0.5135 27 1 -0.3633 -0.8898 -0.5142 28 1 1.6744 2.1445 -0.0004 29 1 4.1740 2.0609 0.0108 30 1 5.7189 -2.2248 0.0004 31 1 8.1247 -1.0431 -0.8896 32 1 8.1248 -1.0430 0.8904 33 1 10.1197 -2.6899 0.7603 34 1 9.9293 -4.1675 -0.2137 35 1 11.0410 -2.4372 -1.4288 36 1 7.2334 -3.1801 -1.9164 37 1 5.8915 -5.4448 -3.9653 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001507195147.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:16:59 Heat of formation + Delta-G solvation = -45.697193 kcal Electronic energy + Delta-G solvation = -21481.130122 eV Core-core repulsion = 18065.252468 eV Total energy + Delta-G solvation = -3415.877654 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 280.132 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -42.28068 -40.53561 -38.62475 -36.43454 -35.41126 -34.93815 -34.14581 -33.12855 -30.36215 -29.34900 -26.91891 -25.95952 -25.58330 -24.12188 -22.04053 -21.63487 -19.64221 -19.14516 -18.50257 -18.13490 -17.16585 -16.82125 -16.65618 -16.50009 -15.94661 -15.89937 -15.29732 -15.13376 -14.85746 -14.50411 -14.37744 -14.15509 -13.81345 -13.60239 -13.21145 -13.04786 -12.78195 -12.65274 -12.54381 -12.26734 -11.90839 -11.74270 -11.34924 -11.28508 -10.95888 -10.84796 -10.78816 -10.70902 -10.11285 -9.00653 -7.89963 -5.19150 -0.62063 -0.26800 1.48452 1.50857 1.52416 1.57967 1.97687 2.54663 2.57924 2.77213 3.34003 3.43009 3.53136 3.61680 3.71837 3.87591 3.88250 3.98601 4.01374 4.42395 4.54744 4.55129 4.58979 4.67199 4.77394 4.83943 4.96936 5.00062 5.03064 5.19895 5.31428 5.36820 5.54210 6.28633 6.37200 6.94844 7.09042 7.36643 7.50920 8.08875 8.33613 9.33270 Molecular weight = 280.13amu Principal moments of inertia in cm(-1) A = 0.013933 B = 0.005184 C = 0.003947 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2009.068979 B = 5399.924566 C = 7091.871912 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.100 4.100 2 C 0.077 3.923 3 C -0.102 4.102 4 C -0.068 4.068 5 C -0.002 4.002 6 C 0.569 3.431 7 O -0.563 6.563 8 N -0.693 5.693 9 C 0.126 3.874 10 C 0.159 3.841 11 H 0.078 0.922 12 C 0.067 3.933 13 O -0.584 6.584 14 N -0.723 5.723 15 C -0.237 4.237 16 H 0.082 0.918 17 C -0.072 4.072 18 N -0.968 5.968 19 Si 0.970 3.030 20 H -0.290 1.290 21 H -0.301 1.301 22 H -0.266 1.266 23 N -0.235 5.235 24 N -0.281 5.281 25 H 0.105 0.895 26 H 0.116 0.884 27 H 0.076 0.924 28 H 0.210 0.790 29 H 0.179 0.821 30 H 0.414 0.586 31 H 0.059 0.941 32 H 0.089 0.911 33 H 0.069 0.931 34 H 0.037 0.963 35 H 0.386 0.614 36 H 0.371 0.629 37 H 0.247 0.753 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.967 14.008 9.980 18.557 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C -0.066 4.066 3 C -0.130 4.130 4 C -0.097 4.097 5 C -0.150 4.150 6 C 0.353 3.647 7 O -0.442 6.442 8 N -0.342 5.342 9 C 0.002 3.998 10 C 0.049 3.951 11 H 0.095 0.905 12 C -0.014 4.014 13 O -0.390 6.390 14 N -0.363 5.363 15 C -0.369 4.369 16 H 0.100 0.900 17 C -0.265 4.265 18 N -0.618 5.618 19 Si 0.799 3.201 20 H -0.217 1.217 21 H -0.228 1.228 22 H -0.191 1.191 23 N -0.080 5.080 24 N -0.125 5.125 25 H 0.123 0.877 26 H 0.134 0.866 27 H 0.094 0.906 28 H 0.227 0.773 29 H 0.196 0.804 30 H 0.251 0.749 31 H 0.077 0.923 32 H 0.107 0.893 33 H 0.087 0.913 34 H 0.055 0.945 35 H 0.234 0.766 36 H 0.203 0.797 37 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges -7.118 12.956 10.010 17.853 hybrid contribution 0.454 -0.173 -0.675 0.832 sum -6.664 12.783 9.335 17.175 Atomic orbital electron populations 1.20921 0.83971 1.05630 1.05278 1.23899 1.01381 0.90149 0.91216 1.22849 0.93004 1.01483 0.95689 1.22714 0.96497 0.98128 0.92352 1.22818 0.95576 0.93533 1.03033 1.17857 0.86145 0.83765 0.76926 1.90724 1.64343 1.36503 1.52607 1.45969 1.08835 1.08423 1.70970 1.21573 0.78560 0.97366 1.02323 1.20882 0.91506 0.90514 0.92161 0.90466 1.22835 0.95978 0.95082 0.87467 1.86520 1.28862 1.76044 1.47606 1.42471 1.71273 1.05464 1.17114 1.19620 1.31159 0.85512 1.00581 0.90006 1.25510 1.02504 1.01942 0.96525 1.69856 1.48517 1.36221 1.07248 0.85196 0.77975 0.80743 0.76145 1.21732 1.22809 1.19113 1.73240 1.00697 1.27222 1.06831 1.73074 1.00552 1.27132 1.11725 0.87702 0.86561 0.90554 0.77285 0.80378 0.74865 0.92268 0.89341 0.91255 0.94461 0.76600 0.79713 0.94381 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.14 10.19 71.24 0.73 -0.42 16 2 C 0.08 1.62 6.87 42.59 0.29 1.92 16 3 C -0.10 -1.66 9.86 22.49 0.22 -1.43 16 4 C -0.07 -1.59 9.73 22.77 0.22 -1.37 16 5 C 0.00 -0.08 6.83 41.99 0.29 0.21 16 6 C 0.57 21.19 7.82 86.88 0.68 21.87 16 7 O -0.56 -22.08 16.39 -3.78 -0.06 -22.14 16 8 N -0.69 -26.70 5.38 -465.66 -2.51 -29.20 16 9 C 0.13 4.60 5.12 86.38 0.44 5.04 16 10 C 0.16 6.12 2.84 44.99 0.13 6.25 16 11 H 0.08 2.82 8.08 -2.39 -0.02 2.80 16 12 C 0.07 2.24 6.86 71.98 0.49 2.73 16 13 O -0.58 -20.38 12.64 -148.98 -1.88 -22.27 16 14 N -0.72 -36.27 4.51 -322.95 -1.46 -37.73 16 15 C -0.24 -12.93 9.93 84.03 0.83 -12.10 16 16 H 0.08 4.19 7.83 -2.91 -0.02 4.17 16 17 C -0.07 -4.19 5.50 84.86 0.47 -3.72 16 18 N -0.97 -60.89 13.06 21.65 0.28 -60.61 16 19 Si 0.97 46.78 29.55 68.60 2.03 48.81 16 20 H -0.29 -13.90 7.11 99.48 0.71 -13.19 16 21 H -0.30 -14.82 7.11 99.48 0.71 -14.11 16 22 H -0.27 -11.96 7.11 99.48 0.71 -11.26 16 23 N -0.23 -8.62 10.75 -48.49 -0.52 -9.14 16 24 N -0.28 -9.04 11.43 -47.53 -0.54 -9.58 16 25 H 0.10 0.86 8.14 -2.39 -0.02 0.84 16 26 H 0.12 0.53 8.09 -2.39 -0.02 0.52 16 27 H 0.08 1.07 8.14 -2.39 -0.02 1.05 16 28 H 0.21 1.04 8.06 -2.91 -0.02 1.02 16 29 H 0.18 3.43 7.72 -2.91 -0.02 3.41 16 30 H 0.41 17.33 7.49 -92.71 -0.69 16.64 16 31 H 0.06 2.43 7.40 -2.38 -0.02 2.41 16 32 H 0.09 2.80 8.14 -2.39 -0.02 2.78 16 33 H 0.07 1.75 8.14 -2.39 -0.02 1.74 16 34 H 0.04 1.33 8.14 -2.38 -0.02 1.31 16 35 H 0.39 9.36 9.12 -74.06 -0.68 8.68 16 36 H 0.37 21.10 7.80 -92.71 -0.72 20.38 16 37 H 0.25 15.23 8.31 -92.70 -0.77 14.46 16 Total: -1.00 -78.39 327.17 -0.83 -79.23 By element: Atomic # 1 Polarization: 44.61 SS G_CDS: -0.97 Total: 43.65 kcal Atomic # 6 Polarization: 14.18 SS G_CDS: 4.79 Total: 18.98 kcal Atomic # 7 Polarization: -141.51 SS G_CDS: -4.74 Total: -146.26 kcal Atomic # 8 Polarization: -42.46 SS G_CDS: -1.94 Total: -44.40 kcal Atomic # 14 Polarization: 46.78 SS G_CDS: 2.03 Total: 48.81 kcal Total: -78.39 -0.83 -79.23 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001507195147.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.530 kcal (2) G-P(sol) polarization free energy of solvation -78.394 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.864 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.833 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.227 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.697 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds