Wall clock time and date at job start Fri Apr 10 2020 17:17:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 N 1.30841 * 125.90347 * 2 1 4 4 N 1.40077 * 108.20904 * 180.02562 * 3 2 1 5 5 C 1.46506 * 126.03484 * 179.97438 * 4 3 2 6 6 C 1.34948 * 107.92645 * 0.26143 * 4 3 2 7 7 C 1.35318 * 107.74290 * 359.57821 * 6 4 3 8 8 C 1.50700 * 126.03840 * 180.16409 * 7 6 4 9 9 C 1.50695 * 109.47145 * 265.30936 * 8 7 6 10 10 O 1.21292 * 119.99919 * 359.97438 * 9 8 7 11 11 N 1.34774 * 120.00283 * 179.97438 * 9 8 7 12 12 C 1.46509 * 120.00295 * 179.97438 * 11 9 8 13 13 C 1.50700 * 109.47158 * 180.02562 * 12 11 9 14 14 O 1.21297 * 119.99928 * 0.02562 * 13 12 11 15 15 N 1.34774 * 119.99803 * 180.02562 * 13 12 11 16 16 C 1.37099 * 119.99961 * 180.02562 * 15 13 12 17 17 H 1.08004 * 119.99879 * 359.97438 * 16 15 13 18 18 C 1.38949 * 120.00106 * 179.97438 * 16 15 13 19 19 N 1.31406 * 120.00235 * 179.97438 * 18 16 15 20 20 Si 1.86804 * 119.99987 * 0.02562 * 18 16 15 21 21 H 1.48491 * 109.47406 * 89.99799 * 20 18 16 22 22 H 1.48501 * 109.46883 * 210.00021 * 20 18 16 23 23 H 1.48504 * 109.46811 * 329.99838 * 20 18 16 24 24 H 1.08997 * 109.47164 * 89.98038 * 1 2 3 25 25 H 1.09002 * 109.46768 * 209.97863 * 1 2 3 26 26 H 1.08999 * 109.47145 * 329.97571 * 1 2 3 27 27 H 1.08999 * 109.46871 * 90.02616 * 5 4 3 28 28 H 1.08994 * 109.46947 * 210.02323 * 5 4 3 29 29 H 1.08997 * 109.47271 * 330.02840 * 5 4 3 30 30 H 1.08002 * 126.12338 * 179.73269 * 6 4 3 31 31 H 1.09003 * 109.47210 * 25.30474 * 8 7 6 32 32 H 1.09000 * 109.47322 * 145.30308 * 8 7 6 33 33 H 0.96998 * 119.99882 * 359.97438 * 11 9 8 34 34 H 1.09003 * 109.47114 * 300.00241 * 12 11 9 35 35 H 1.08995 * 109.46665 * 60.00014 * 12 11 9 36 36 H 0.97001 * 120.00286 * 359.97438 * 15 13 12 37 37 H 0.96995 * 120.00626 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2743 1.0598 0.0000 4 7 3.6088 0.6341 -0.0006 5 6 4.7899 1.5008 -0.0013 6 6 3.6142 -0.7154 -0.0068 7 6 2.3271 -1.1330 -0.0006 8 6 1.8599 -2.5658 -0.0007 9 6 1.5860 -3.0047 -1.4160 10 8 1.7532 -2.2301 -2.3343 11 7 1.1551 -4.2579 -1.6616 12 6 0.8883 -4.6844 -3.0375 13 6 0.4212 -6.1172 -3.0377 14 8 0.3205 -6.7224 -1.9913 15 7 0.1152 -6.7261 -4.2004 16 6 -0.3103 -8.0294 -4.2005 17 1 -0.3999 -8.5683 -3.2688 18 6 -0.6262 -8.6570 -5.3993 19 7 -1.0335 -9.9063 -5.3994 20 14 -0.4706 -7.7252 -7.0108 21 1 0.8963 -7.9115 -7.5604 22 1 -1.4689 -8.2432 -7.9805 23 1 -0.7155 -6.2800 -6.7726 24 1 -0.3633 0.0004 -1.0276 25 1 -0.3633 -0.8902 0.5135 26 1 -0.3633 0.8898 0.5142 27 1 5.0836 1.7155 1.0262 28 1 5.6089 0.9983 -0.5158 29 1 4.5560 2.4334 -0.5147 30 1 4.4892 -1.3485 -0.0129 31 1 2.6329 -3.2001 0.4332 32 1 0.9471 -2.6503 0.5891 33 1 1.0217 -4.8774 -0.9272 34 1 0.1148 -4.0504 -3.4709 35 1 1.8007 -4.5993 -3.6276 36 1 0.1953 -6.2420 -5.0372 37 1 -1.2537 -10.3446 -6.2362 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001531942541.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:17:14 Heat of formation + Delta-G solvation = 4.290556 kcal Electronic energy + Delta-G solvation = -20894.193552 eV Core-core repulsion = 17480.483530 eV Total energy + Delta-G solvation = -3413.710022 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 280.132 amu Computer time = 3.33 seconds Orbital eigenvalues (eV) -41.39592 -39.45495 -38.22111 -34.52616 -34.26644 -33.68681 -32.09975 -31.78662 -29.88713 -28.59630 -27.05358 -25.01646 -24.05347 -21.07488 -20.32475 -19.71446 -19.42808 -18.58999 -17.08826 -16.77920 -15.72795 -15.58123 -15.48279 -15.26497 -14.74557 -14.53878 -14.05898 -13.79649 -13.57328 -13.43678 -13.05153 -13.05015 -12.61746 -12.46909 -12.25920 -12.21580 -12.15652 -12.11671 -11.65731 -11.23500 -10.64542 -10.57656 -10.06737 -9.73651 -9.69946 -9.26801 -8.82182 -8.77306 -8.42087 -8.30665 -6.41046 -3.93586 1.78443 2.38477 2.60686 2.86694 2.99510 3.04059 3.12149 3.51550 3.56825 4.03334 4.30229 4.57147 4.64769 4.85163 4.87817 4.94624 5.11823 5.13341 5.15776 5.17980 5.31580 5.50661 5.63385 5.70876 5.80614 5.83219 5.83440 5.93064 5.99174 6.60092 6.63452 6.89644 7.44142 7.64473 7.82201 8.00598 8.42259 8.50778 8.81564 9.29819 9.63594 10.71158 Molecular weight = 280.13amu Principal moments of inertia in cm(-1) A = 0.035808 B = 0.002953 C = 0.002903 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 781.763393 B = 9480.616556 C = 9641.708046 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 C 0.093 3.907 3 N -0.302 5.302 4 N -0.380 5.380 5 C 0.105 3.895 6 C 0.067 3.933 7 C -0.214 4.214 8 C -0.059 4.059 9 C 0.510 3.490 10 O -0.542 6.542 11 N -0.711 5.711 12 C 0.107 3.893 13 C 0.438 3.562 14 O -0.579 6.579 15 N -0.577 5.577 16 C -0.310 4.310 17 H 0.122 0.878 18 C 0.045 3.955 19 N -0.875 5.875 20 Si 0.879 3.121 21 H -0.269 1.269 22 H -0.275 1.275 23 H -0.267 1.267 24 H 0.079 0.921 25 H 0.076 0.924 26 H 0.071 0.929 27 H 0.072 0.928 28 H 0.085 0.915 29 H 0.087 0.913 30 H 0.172 0.828 31 H 0.099 0.901 32 H 0.101 0.899 33 H 0.411 0.589 34 H 0.083 0.917 35 H 0.083 0.917 36 H 0.374 0.626 37 H 0.275 0.725 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.053 19.352 9.641 23.439 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.074 4.074 3 N -0.125 5.125 4 N -0.161 5.161 5 C -0.036 4.036 6 C -0.079 4.079 7 C -0.226 4.226 8 C -0.101 4.101 9 C 0.296 3.704 10 O -0.419 6.419 11 N -0.366 5.366 12 C -0.021 4.021 13 C 0.224 3.776 14 O -0.463 6.463 15 N -0.215 5.215 16 C -0.438 4.438 17 H 0.139 0.861 18 C -0.159 4.159 19 N -0.514 5.514 20 Si 0.705 3.295 21 H -0.194 1.194 22 H -0.200 1.200 23 H -0.192 1.192 24 H 0.098 0.902 25 H 0.095 0.905 26 H 0.089 0.911 27 H 0.091 0.909 28 H 0.104 0.896 29 H 0.105 0.895 30 H 0.189 0.811 31 H 0.117 0.883 32 H 0.119 0.881 33 H 0.249 0.751 34 H 0.101 0.899 35 H 0.101 0.899 36 H 0.207 0.793 37 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 9.216 20.658 9.544 24.551 hybrid contribution 0.170 -0.690 -1.206 1.400 sum 9.386 19.967 8.338 23.586 Atomic orbital electron populations 1.20191 0.86821 1.02984 1.03300 1.22154 0.96792 0.90158 0.98273 1.77267 0.86328 1.22694 1.26205 1.48240 1.05531 1.04648 1.57687 1.21802 0.83724 0.95035 1.03074 1.22232 0.99064 0.84933 1.01662 1.19301 0.91949 0.94716 1.16631 1.19861 1.03442 0.92514 0.94239 1.20678 0.76875 0.81269 0.91562 1.90688 1.51969 1.52938 1.46336 1.45744 1.67711 1.13761 1.09425 1.20939 1.01768 0.94820 0.84565 1.19675 0.85077 0.87966 0.84840 1.90537 1.58410 1.66303 1.31082 1.42138 1.59438 1.13271 1.06642 1.19443 1.41499 0.85719 0.97183 0.86072 1.25063 0.96925 0.95767 0.98152 1.69611 1.43185 1.10613 1.27951 0.86674 0.79161 0.79893 0.83785 1.19421 1.19987 1.19226 0.90250 0.90480 0.91053 0.90941 0.89590 0.89455 0.81110 0.88291 0.88081 0.75061 0.89883 0.89946 0.79260 0.91389 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.78 10.26 36.00 0.37 -0.41 16 2 C 0.09 1.22 7.22 -82.40 -0.59 0.62 16 3 N -0.30 -4.19 12.57 33.67 0.42 -3.76 16 4 N -0.38 -4.29 4.01 -68.16 -0.27 -4.56 16 5 C 0.11 0.68 11.47 59.85 0.69 1.37 16 6 C 0.07 0.73 11.40 -17.22 -0.20 0.53 16 7 C -0.21 -2.62 4.59 -105.05 -0.48 -3.10 16 8 C -0.06 -0.64 5.95 -29.04 -0.17 -0.81 16 9 C 0.51 7.42 7.82 -10.99 -0.09 7.33 16 10 O -0.54 -9.81 16.03 5.55 0.09 -9.72 16 11 N -0.71 -10.86 5.53 -61.47 -0.34 -11.20 16 12 C 0.11 1.83 6.15 -5.19 -0.03 1.80 16 13 C 0.44 9.52 7.85 -10.99 -0.09 9.43 16 14 O -0.58 -14.39 15.24 5.54 0.08 -14.30 16 15 N -0.58 -13.35 5.09 -10.96 -0.06 -13.41 16 16 C -0.31 -8.50 10.16 -14.93 -0.15 -8.65 16 17 H 0.12 3.78 7.39 -52.48 -0.39 3.39 16 18 C 0.05 1.20 5.50 -17.47 -0.10 1.11 16 19 N -0.87 -24.89 13.96 55.50 0.77 -24.12 16 20 Si 0.88 18.97 27.74 -169.99 -4.72 14.26 16 21 H -0.27 -5.70 7.11 56.52 0.40 -5.30 16 22 H -0.27 -5.95 7.11 56.52 0.40 -5.55 16 23 H -0.27 -5.29 6.52 56.52 0.37 -4.92 16 24 H 0.08 0.88 8.14 -51.93 -0.42 0.46 16 25 H 0.08 0.68 7.37 -51.93 -0.38 0.29 16 26 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 27 H 0.07 0.35 8.14 -51.93 -0.42 -0.07 16 28 H 0.09 0.37 8.14 -51.93 -0.42 -0.05 16 29 H 0.09 0.54 8.14 -51.93 -0.42 0.12 16 30 H 0.17 1.29 8.06 -52.49 -0.42 0.87 16 31 H 0.10 0.83 8.14 -51.93 -0.42 0.40 16 32 H 0.10 0.89 7.41 -51.93 -0.39 0.51 16 33 H 0.41 6.08 7.44 -40.82 -0.30 5.78 16 34 H 0.08 1.35 8.14 -51.93 -0.42 0.93 16 35 H 0.08 1.33 8.14 -51.93 -0.42 0.91 16 36 H 0.37 7.67 5.76 -40.82 -0.24 7.43 16 37 H 0.28 7.23 8.31 -40.82 -0.34 6.89 16 LS Contribution 326.16 15.07 4.92 4.92 Total: -1.00 -35.74 326.16 -4.61 -40.35 By element: Atomic # 1 Polarization: 16.99 SS G_CDS: -4.67 Total: 12.32 kcal Atomic # 6 Polarization: 10.07 SS G_CDS: -0.84 Total: 9.22 kcal Atomic # 7 Polarization: -57.58 SS G_CDS: 0.53 Total: -57.05 kcal Atomic # 8 Polarization: -24.20 SS G_CDS: 0.17 Total: -24.02 kcal Atomic # 14 Polarization: 18.97 SS G_CDS: -4.72 Total: 14.26 kcal Total LS contribution 4.92 Total: 4.92 kcal Total: -35.74 -4.61 -40.35 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001531942541.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.638 kcal (2) G-P(sol) polarization free energy of solvation -35.740 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.898 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.607 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.347 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.291 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.33 seconds