Wall clock time and date at job start Fri Apr 10 2020 17:17:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 N 1.30841 * 125.90347 * 2 1 4 4 N 1.40077 * 108.20904 * 180.02562 * 3 2 1 5 5 C 1.46506 * 126.03484 * 179.97438 * 4 3 2 6 6 C 1.34948 * 107.92645 * 0.26143 * 4 3 2 7 7 C 1.35318 * 107.74290 * 359.57821 * 6 4 3 8 8 C 1.50700 * 126.03840 * 180.16409 * 7 6 4 9 9 C 1.50695 * 109.47145 * 265.30936 * 8 7 6 10 10 O 1.21292 * 119.99919 * 359.97438 * 9 8 7 11 11 N 1.34774 * 120.00283 * 179.97438 * 9 8 7 12 12 C 1.46509 * 120.00295 * 179.97438 * 11 9 8 13 13 C 1.50700 * 109.47158 * 180.02562 * 12 11 9 14 14 O 1.21297 * 119.99928 * 0.02562 * 13 12 11 15 15 N 1.34774 * 119.99803 * 180.02562 * 13 12 11 16 16 C 1.37099 * 119.99961 * 180.02562 * 15 13 12 17 17 H 1.08004 * 119.99879 * 359.97438 * 16 15 13 18 18 C 1.38949 * 120.00106 * 179.97438 * 16 15 13 19 19 N 1.31406 * 120.00235 * 179.97438 * 18 16 15 20 20 Si 1.86804 * 119.99987 * 0.02562 * 18 16 15 21 21 H 1.48491 * 109.47406 * 89.99799 * 20 18 16 22 22 H 1.48501 * 109.46883 * 210.00021 * 20 18 16 23 23 H 1.48504 * 109.46811 * 329.99838 * 20 18 16 24 24 H 1.08997 * 109.47164 * 89.98038 * 1 2 3 25 25 H 1.09002 * 109.46768 * 209.97863 * 1 2 3 26 26 H 1.08999 * 109.47145 * 329.97571 * 1 2 3 27 27 H 1.08999 * 109.46871 * 90.02616 * 5 4 3 28 28 H 1.08994 * 109.46947 * 210.02323 * 5 4 3 29 29 H 1.08997 * 109.47271 * 330.02840 * 5 4 3 30 30 H 1.08002 * 126.12338 * 179.73269 * 6 4 3 31 31 H 1.09003 * 109.47210 * 25.30474 * 8 7 6 32 32 H 1.09000 * 109.47322 * 145.30308 * 8 7 6 33 33 H 0.96998 * 119.99882 * 359.97438 * 11 9 8 34 34 H 1.09003 * 109.47114 * 300.00241 * 12 11 9 35 35 H 1.08995 * 109.46665 * 60.00014 * 12 11 9 36 36 H 0.97001 * 120.00286 * 359.97438 * 15 13 12 37 37 H 0.96995 * 120.00626 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2743 1.0598 0.0000 4 7 3.6088 0.6341 -0.0006 5 6 4.7899 1.5008 -0.0013 6 6 3.6142 -0.7154 -0.0068 7 6 2.3271 -1.1330 -0.0006 8 6 1.8599 -2.5658 -0.0007 9 6 1.5860 -3.0047 -1.4160 10 8 1.7532 -2.2301 -2.3343 11 7 1.1551 -4.2579 -1.6616 12 6 0.8883 -4.6844 -3.0375 13 6 0.4212 -6.1172 -3.0377 14 8 0.3205 -6.7224 -1.9913 15 7 0.1152 -6.7261 -4.2004 16 6 -0.3103 -8.0294 -4.2005 17 1 -0.3999 -8.5683 -3.2688 18 6 -0.6262 -8.6570 -5.3993 19 7 -1.0335 -9.9063 -5.3994 20 14 -0.4706 -7.7252 -7.0108 21 1 0.8963 -7.9115 -7.5604 22 1 -1.4689 -8.2432 -7.9805 23 1 -0.7155 -6.2800 -6.7726 24 1 -0.3633 0.0004 -1.0276 25 1 -0.3633 -0.8902 0.5135 26 1 -0.3633 0.8898 0.5142 27 1 5.0836 1.7155 1.0262 28 1 5.6089 0.9983 -0.5158 29 1 4.5560 2.4334 -0.5147 30 1 4.4892 -1.3485 -0.0129 31 1 2.6329 -3.2001 0.4332 32 1 0.9471 -2.6503 0.5891 33 1 1.0217 -4.8774 -0.9272 34 1 0.1148 -4.0504 -3.4709 35 1 1.8007 -4.5993 -3.6276 36 1 0.1953 -6.2420 -5.0372 37 1 -1.2537 -10.3446 -6.2362 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001531942541.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:17:12 Heat of formation + Delta-G solvation = -24.044186 kcal Electronic energy + Delta-G solvation = -20895.422239 eV Core-core repulsion = 17480.483530 eV Total energy + Delta-G solvation = -3414.938709 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 280.132 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -42.22608 -40.85020 -39.82149 -36.25656 -35.23370 -35.03356 -33.81974 -32.96989 -30.61161 -29.81746 -28.22003 -26.29262 -25.34355 -22.00678 -21.43580 -21.35510 -20.62970 -20.23722 -18.41148 -17.63993 -17.24522 -16.82787 -16.75891 -16.48085 -16.22786 -15.73380 -15.21721 -15.05369 -14.71911 -14.37043 -14.32899 -14.16946 -13.95228 -13.84572 -13.66304 -13.16634 -12.95951 -12.94445 -12.90879 -12.55707 -12.43667 -11.99971 -11.56774 -11.42296 -10.93072 -10.62694 -10.31604 -10.11928 -10.07019 -9.25303 -8.44437 -6.06053 0.97321 1.31649 1.34355 1.44030 1.65192 1.73963 1.74370 1.83827 2.20785 2.30990 2.95689 3.12051 3.61193 3.94329 3.94946 4.08308 4.23575 4.33055 4.42889 4.44938 4.47793 4.48549 4.55365 4.68919 4.74145 4.86525 5.02791 5.15029 5.18932 5.35847 5.51086 5.77135 5.90175 6.19679 6.50066 6.65419 6.79837 6.80270 7.27709 7.36541 7.80280 8.72032 Molecular weight = 280.13amu Principal moments of inertia in cm(-1) A = 0.035808 B = 0.002953 C = 0.002903 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 781.763393 B = 9480.616556 C = 9641.708046 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 C 0.073 3.927 3 N -0.341 5.341 4 N -0.384 5.384 5 C 0.095 3.905 6 C 0.069 3.931 7 C -0.239 4.239 8 C -0.051 4.051 9 C 0.515 3.485 10 O -0.578 6.578 11 N -0.712 5.712 12 C 0.119 3.881 13 C 0.446 3.554 14 O -0.612 6.612 15 N -0.580 5.580 16 C -0.330 4.330 17 H 0.065 0.935 18 C -0.008 4.008 19 N -0.926 5.926 20 Si 0.958 3.042 21 H -0.257 1.257 22 H -0.274 1.274 23 H -0.234 1.234 24 H 0.068 0.932 25 H 0.093 0.907 26 H 0.078 0.922 27 H 0.089 0.911 28 H 0.111 0.889 29 H 0.085 0.915 30 H 0.204 0.796 31 H 0.127 0.873 32 H 0.120 0.880 33 H 0.415 0.585 34 H 0.098 0.902 35 H 0.100 0.900 36 H 0.391 0.609 37 H 0.281 0.719 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.439 21.274 9.049 25.366 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.093 4.093 3 N -0.165 5.165 4 N -0.165 5.165 5 C -0.045 4.045 6 C -0.078 4.078 7 C -0.250 4.250 8 C -0.091 4.091 9 C 0.303 3.697 10 O -0.457 6.457 11 N -0.367 5.367 12 C -0.009 4.009 13 C 0.234 3.766 14 O -0.498 6.498 15 N -0.221 5.221 16 C -0.459 4.459 17 H 0.083 0.917 18 C -0.208 4.208 19 N -0.566 5.566 20 Si 0.778 3.222 21 H -0.181 1.181 22 H -0.199 1.199 23 H -0.157 1.157 24 H 0.087 0.913 25 H 0.111 0.889 26 H 0.096 0.904 27 H 0.108 0.892 28 H 0.129 0.871 29 H 0.104 0.896 30 H 0.221 0.779 31 H 0.145 0.855 32 H 0.138 0.862 33 H 0.253 0.747 34 H 0.116 0.884 35 H 0.118 0.882 36 H 0.227 0.773 37 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 10.613 22.614 8.982 26.546 hybrid contribution -0.197 -1.278 -0.877 1.563 sum 10.416 21.336 8.104 25.088 Atomic orbital electron populations 1.20239 0.85920 1.04180 1.02884 1.22571 0.97793 0.90580 0.98313 1.77187 0.87855 1.23784 1.27678 1.48644 1.05645 1.05478 1.56713 1.22152 0.82884 0.94799 1.04618 1.22819 0.99869 0.85159 0.99997 1.19569 0.92510 0.95081 1.17878 1.19899 1.05312 0.92167 0.91723 1.21313 0.75433 0.80166 0.92781 1.90677 1.53498 1.53690 1.47839 1.45798 1.67975 1.14317 1.08639 1.20820 1.02780 0.91067 0.86278 1.20549 0.82761 0.89508 0.83789 1.90526 1.59081 1.67803 1.32405 1.41961 1.60154 1.11968 1.07968 1.19035 1.43522 0.87658 0.95681 0.91735 1.26046 0.95667 0.96621 1.02480 1.69773 1.44443 1.12857 1.29548 0.85455 0.79559 0.79900 0.77267 1.18125 1.19897 1.15734 0.91333 0.88866 0.90357 0.89206 0.87066 0.89634 0.77893 0.85453 0.86158 0.74712 0.88379 0.88213 0.77324 0.90957 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.50 10.26 71.24 0.73 -0.76 16 2 C 0.07 1.84 7.22 43.10 0.31 2.16 16 3 N -0.34 -9.22 12.57 -47.38 -0.60 -9.81 16 4 N -0.38 -7.99 4.01 -369.56 -1.48 -9.47 16 5 C 0.10 1.03 11.47 127.77 1.47 2.50 16 6 C 0.07 1.32 11.40 83.54 0.95 2.27 16 7 C -0.24 -5.35 4.59 -20.14 -0.09 -5.44 16 8 C -0.05 -0.94 5.95 29.10 0.17 -0.77 16 9 C 0.51 13.75 7.82 87.66 0.69 14.43 16 10 O -0.58 -19.75 16.03 -3.07 -0.05 -19.80 16 11 N -0.71 -20.18 5.53 -466.77 -2.58 -22.76 16 12 C 0.12 3.78 6.15 85.63 0.53 4.31 16 13 C 0.45 19.04 7.85 87.66 0.69 19.73 16 14 O -0.61 -30.73 15.24 -3.08 -0.05 -30.78 16 15 N -0.58 -26.43 5.09 -306.98 -1.56 -27.99 16 16 C -0.33 -18.57 10.16 84.04 0.85 -17.72 16 17 H 0.06 4.28 7.39 -2.91 -0.02 4.26 16 18 C -0.01 -0.44 5.50 84.93 0.47 0.02 16 19 N -0.93 -54.20 13.96 21.66 0.30 -53.90 16 20 Si 0.96 38.03 27.74 68.60 1.90 39.93 16 21 H -0.26 -9.71 7.11 99.48 0.71 -9.00 16 22 H -0.27 -10.82 7.11 99.48 0.71 -10.12 16 23 H -0.23 -7.96 6.52 99.48 0.65 -7.31 16 24 H 0.07 1.51 8.14 -2.39 -0.02 1.49 16 25 H 0.09 1.50 7.37 -2.39 -0.02 1.48 16 26 H 0.08 1.41 8.14 -2.39 -0.02 1.39 16 27 H 0.09 0.66 8.14 -2.39 -0.02 0.64 16 28 H 0.11 0.62 8.14 -2.39 -0.02 0.60 16 29 H 0.08 0.95 8.14 -2.39 -0.02 0.93 16 30 H 0.20 2.31 8.06 -2.91 -0.02 2.29 16 31 H 0.13 1.65 8.14 -2.39 -0.02 1.63 16 32 H 0.12 1.78 7.41 -2.39 -0.02 1.76 16 33 H 0.41 11.51 7.44 -92.71 -0.69 10.82 16 34 H 0.10 2.91 8.14 -2.39 -0.02 2.89 16 35 H 0.10 2.92 8.14 -2.39 -0.02 2.90 16 36 H 0.39 15.02 5.76 -92.71 -0.53 14.49 16 37 H 0.28 15.03 8.31 -92.71 -0.77 14.26 16 Total: -1.00 -80.94 326.16 2.48 -78.45 By element: Atomic # 1 Polarization: 35.57 SS G_CDS: -0.17 Total: 35.40 kcal Atomic # 6 Polarization: 13.96 SS G_CDS: 6.76 Total: 20.72 kcal Atomic # 7 Polarization: -118.01 SS G_CDS: -5.92 Total: -123.93 kcal Atomic # 8 Polarization: -50.49 SS G_CDS: -0.10 Total: -50.58 kcal Atomic # 14 Polarization: 38.03 SS G_CDS: 1.90 Total: 39.93 kcal Total: -80.94 2.48 -78.45 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001531942541.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.409 kcal (2) G-P(sol) polarization free energy of solvation -80.936 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.527 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.483 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.453 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.044 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds