Wall clock time and date at job start Fri Apr 10 2020 17:17:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 C 1.38818 * 120.42046 * 2 1 4 4 C 1.38778 * 118.50827 * 180.02562 * 3 2 1 5 5 N 1.32123 * 119.16538 * 0.02562 * 4 3 2 6 6 C 1.32449 * 120.76878 * 359.97438 * 5 4 3 7 7 C 1.48541 * 119.18641 * 179.97438 * 6 5 4 8 8 O 1.21470 * 119.99720 * 180.02562 * 7 6 5 9 9 N 1.34771 * 119.99658 * 359.97438 * 7 6 5 10 10 C 1.46505 * 119.99622 * 180.02562 * 9 7 6 11 11 C 1.52997 * 109.47212 * 179.97438 * 10 9 7 12 12 H 1.08998 * 109.47533 * 59.99637 * 11 10 9 13 13 O 1.42905 * 109.47264 * 299.99925 * 11 10 9 14 14 C 1.52992 * 109.47482 * 179.97438 * 11 10 9 15 15 N 1.46499 * 109.47658 * 184.99947 * 14 11 10 16 16 C 1.36939 * 120.00451 * 180.02562 * 15 14 11 17 17 H 1.08002 * 119.99755 * 0.02562 * 16 15 14 18 18 C 1.38809 * 119.99895 * 179.97438 * 16 15 14 19 19 N 1.31628 * 119.99663 * 179.97438 * 18 16 15 20 20 Si 1.86797 * 120.00353 * 0.02562 * 18 16 15 21 21 H 1.48506 * 109.46957 * 89.99940 * 20 18 16 22 22 H 1.48502 * 109.47127 * 209.99941 * 20 18 16 23 23 H 1.48498 * 109.46889 * 330.00053 * 20 18 16 24 24 N 1.32098 * 120.41320 * 180.28279 * 2 1 3 25 25 H 1.09000 * 109.46606 * 89.99313 * 1 2 3 26 26 H 1.08993 * 109.46819 * 209.99478 * 1 2 3 27 27 H 1.09005 * 109.46602 * 329.99798 * 1 2 3 28 28 H 1.08007 * 120.74541 * 0.04915 * 3 2 1 29 29 H 1.08002 * 120.42039 * 180.02562 * 4 3 2 30 30 H 0.96996 * 120.00772 * 359.97438 * 9 7 6 31 31 H 1.09002 * 109.47068 * 299.99729 * 10 9 7 32 32 H 1.09001 * 109.47372 * 59.99816 * 10 9 7 33 33 H 0.96696 * 114.00036 * 299.99911 * 13 11 10 34 34 H 1.09001 * 109.47563 * 305.00337 * 14 11 10 35 35 H 1.09004 * 109.47313 * 64.99993 * 14 11 10 36 36 H 0.97002 * 119.99938 * 0.02562 * 15 14 11 37 37 H 0.97000 * 119.99838 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.2100 1.1971 0.0000 4 6 3.5970 1.1508 -0.0005 5 7 4.2020 -0.0238 -0.0016 6 6 3.5006 -1.1473 -0.0015 7 6 4.2170 -2.4485 -0.0033 8 8 3.5883 -3.4879 -0.0038 9 7 5.5644 -2.4758 -0.0054 10 6 6.2710 -3.7592 -0.0077 11 6 7.7806 -3.5103 -0.0104 12 1 8.0572 -2.9448 0.8794 13 8 8.1388 -2.7673 -1.1774 14 6 8.5185 -4.8505 -0.0121 15 7 9.9596 -4.6148 0.1056 16 6 10.8274 -5.6739 0.1250 17 1 10.4494 -6.6831 0.0531 18 6 12.1929 -5.4504 0.2361 19 7 13.0269 -6.4685 0.2552 20 14 12.8467 -3.7050 0.3598 21 1 12.9163 -3.3025 1.7876 22 1 14.2040 -3.6412 -0.2392 23 1 11.9394 -2.7837 -0.3705 24 7 2.1758 -1.1392 -0.0056 25 1 -0.3632 0.0001 -1.0277 26 1 -0.3633 -0.8900 0.5137 27 1 -0.3633 0.8900 0.5139 28 1 1.6891 2.1432 0.0008 29 1 4.1746 2.0633 -0.0001 30 1 6.0664 -1.6459 -0.0061 31 1 5.9975 -4.3261 0.8823 32 1 5.9947 -4.3245 -0.8977 33 1 7.9213 -3.2113 -2.0084 34 1 8.1790 -5.4534 0.8301 35 1 8.3116 -5.3780 -0.9433 36 1 10.2991 -3.7084 0.1699 37 1 13.9812 -6.3123 0.3324 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001568556889.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:17:59 Heat of formation + Delta-G solvation = -20.068413 kcal Electronic energy + Delta-G solvation = -20760.183071 eV Core-core repulsion = 17345.416765 eV Total energy + Delta-G solvation = -3414.766306 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 280.132 amu Computer time = 4.73 seconds Orbital eigenvalues (eV) -41.65166 -39.54529 -37.73239 -35.15801 -34.42941 -34.08368 -33.08426 -31.48507 -29.77413 -28.92195 -26.54522 -24.81825 -23.58616 -22.27998 -21.53018 -20.80748 -18.43722 -18.14083 -17.69746 -16.42633 -16.26650 -16.21923 -15.73231 -15.59751 -14.89674 -14.56189 -14.48673 -13.93854 -13.74624 -13.60962 -13.45487 -13.22350 -12.84926 -12.66911 -12.39030 -11.99575 -11.68291 -11.30004 -11.07308 -10.86036 -10.80498 -10.36404 -10.15321 -10.06751 -9.76826 -9.75671 -9.55675 -9.21885 -8.92052 -7.25249 -5.76940 -3.13257 0.04166 0.58639 2.38104 2.51605 3.40534 3.46589 3.46887 3.47733 3.50877 3.80049 3.96779 4.40217 4.50929 4.55934 4.61013 4.68294 4.78526 4.92333 5.01952 5.12307 5.22419 5.40809 5.46524 5.51941 5.65588 5.76626 5.82213 5.86234 6.21685 6.42688 6.46716 6.55528 7.18569 7.57175 7.79149 7.97612 7.98827 8.41531 9.20900 9.92882 10.12424 11.41061 Molecular weight = 280.13amu Principal moments of inertia in cm(-1) A = 0.039795 B = 0.002895 C = 0.002733 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 703.439738 B = 9668.003324 C =10241.754322 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 C 0.171 3.829 3 C -0.212 4.212 4 C 0.149 3.851 5 N -0.497 5.497 6 C 0.292 3.708 7 C 0.580 3.420 8 O -0.507 6.507 9 N -0.697 5.697 10 C 0.089 3.911 11 C 0.085 3.915 12 H 0.106 0.894 13 O -0.555 6.555 14 C 0.132 3.868 15 N -0.750 5.750 16 C -0.248 4.248 17 H 0.090 0.910 18 C 0.005 3.995 19 N -0.933 5.933 20 Si 0.884 3.116 21 H -0.284 1.284 22 H -0.291 1.291 23 H -0.272 1.272 24 N -0.470 5.470 25 H 0.088 0.912 26 H 0.086 0.914 27 H 0.083 0.917 28 H 0.154 0.846 29 H 0.178 0.822 30 H 0.416 0.584 31 H 0.084 0.916 32 H 0.078 0.922 33 H 0.376 0.624 34 H 0.039 0.961 35 H 0.033 0.967 36 H 0.366 0.634 37 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.016 18.906 -1.041 31.374 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.025 3.975 3 C -0.234 4.234 4 C -0.016 4.016 5 N -0.214 5.214 6 C 0.021 3.979 7 C 0.361 3.639 8 O -0.379 6.379 9 N -0.351 5.351 10 C -0.035 4.035 11 C 0.025 3.975 12 H 0.124 0.876 13 O -0.360 6.360 14 C 0.003 3.997 15 N -0.396 5.396 16 C -0.377 4.377 17 H 0.108 0.892 18 C -0.191 4.191 19 N -0.581 5.581 20 Si 0.714 3.286 21 H -0.211 1.211 22 H -0.218 1.218 23 H -0.198 1.198 24 N -0.186 5.186 25 H 0.107 0.893 26 H 0.105 0.895 27 H 0.102 0.898 28 H 0.171 0.829 29 H 0.195 0.805 30 H 0.253 0.747 31 H 0.102 0.898 32 H 0.096 0.904 33 H 0.223 0.777 34 H 0.057 0.943 35 H 0.051 0.949 36 H 0.199 0.801 37 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -24.677 17.406 -0.605 30.204 hybrid contribution 0.225 2.067 -0.284 2.099 sum -24.452 19.473 -0.889 31.271 Atomic orbital electron populations 1.20832 0.87150 1.04458 1.04058 1.21912 0.98049 0.87755 0.89835 1.23036 0.96674 1.00758 1.02927 1.23331 0.92225 0.96052 0.90023 1.68332 1.41574 0.98851 1.12684 1.22912 0.87450 0.93007 0.94508 1.17237 0.82382 0.85945 0.78313 1.90821 1.66884 1.32087 1.48107 1.45692 1.05151 1.11064 1.73172 1.22200 0.92562 0.84863 1.03868 1.22456 0.90296 0.95004 0.89716 0.87601 1.86567 1.85722 1.47880 1.15846 1.21176 0.85628 0.93156 0.99726 1.42577 1.00825 1.05773 1.90412 1.19043 0.87503 0.88150 1.43028 0.89233 1.24679 0.95766 0.96858 1.01781 1.69712 1.02352 1.28974 1.57068 0.86534 0.78354 0.85785 0.77909 1.21103 1.21756 1.19800 1.68106 1.08585 1.30495 1.11439 0.89322 0.89488 0.89792 0.82851 0.80542 0.74663 0.89753 0.90405 0.77674 0.94341 0.94948 0.80082 0.93024 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.52 10.22 36.01 0.37 -0.15 16 2 C 0.17 1.43 6.82 -82.26 -0.56 0.87 16 3 C -0.21 -1.24 9.87 -39.17 -0.39 -1.63 16 4 C 0.15 1.05 11.30 -17.23 -0.19 0.86 16 5 N -0.50 -5.28 9.58 -11.12 -0.11 -5.39 16 6 C 0.29 3.75 7.60 -157.06 -1.19 2.55 16 7 C 0.58 8.36 7.85 -12.01 -0.09 8.27 16 8 O -0.51 -8.85 16.86 5.39 0.09 -8.76 16 9 N -0.70 -8.76 5.44 -61.02 -0.33 -9.09 16 10 C 0.09 1.13 5.34 -4.04 -0.02 1.11 16 11 C 0.09 1.22 3.08 -26.74 -0.08 1.14 16 12 H 0.11 1.54 8.14 -51.93 -0.42 1.11 16 13 O -0.55 -8.14 13.03 -35.23 -0.46 -8.60 16 14 C 0.13 2.41 5.90 -4.05 -0.02 2.38 16 15 N -0.75 -17.78 5.35 -59.91 -0.32 -18.10 16 16 C -0.25 -7.06 10.47 -15.06 -0.16 -7.21 16 17 H 0.09 2.72 8.06 -52.49 -0.42 2.30 16 18 C 0.01 0.15 5.50 -17.43 -0.10 0.06 16 19 N -0.93 -29.56 13.97 55.49 0.78 -28.78 16 20 Si 0.88 22.38 27.74 -169.99 -4.71 17.67 16 21 H -0.28 -7.12 7.11 56.52 0.40 -6.72 16 22 H -0.29 -7.45 7.11 56.52 0.40 -7.05 16 23 H -0.27 -6.58 6.52 56.52 0.37 -6.21 16 24 N -0.47 -5.85 10.07 -7.37 -0.07 -5.92 16 25 H 0.09 0.34 8.14 -51.93 -0.42 -0.08 16 26 H 0.09 0.49 8.14 -51.93 -0.42 0.07 16 27 H 0.08 0.19 8.10 -51.93 -0.42 -0.23 16 28 H 0.15 0.32 8.06 -52.48 -0.42 -0.10 16 29 H 0.18 0.60 8.06 -52.49 -0.42 0.17 16 30 H 0.42 4.89 7.65 -40.82 -0.31 4.58 16 31 H 0.08 1.08 8.14 -51.93 -0.42 0.65 16 32 H 0.08 0.97 8.14 -51.93 -0.42 0.55 16 33 H 0.38 4.50 9.05 45.56 0.41 4.91 16 34 H 0.04 0.70 8.14 -51.93 -0.42 0.28 16 35 H 0.03 0.59 8.14 -51.93 -0.42 0.17 16 36 H 0.37 8.64 5.53 -40.82 -0.23 8.41 16 37 H 0.26 7.82 8.31 -40.82 -0.34 7.48 16 LS Contribution 326.52 15.07 4.92 4.92 Total: -1.00 -36.91 326.52 -6.61 -43.52 By element: Atomic # 1 Polarization: 14.23 SS G_CDS: -3.94 Total: 10.29 kcal Atomic # 6 Polarization: 10.69 SS G_CDS: -2.44 Total: 8.24 kcal Atomic # 7 Polarization: -67.23 SS G_CDS: -0.06 Total: -67.28 kcal Atomic # 8 Polarization: -16.99 SS G_CDS: -0.37 Total: -17.36 kcal Atomic # 14 Polarization: 22.38 SS G_CDS: -4.71 Total: 17.67 kcal Total LS contribution 4.92 Total: 4.92 kcal Total: -36.91 -6.61 -43.52 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001568556889.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.453 kcal (2) G-P(sol) polarization free energy of solvation -36.915 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.462 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.606 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.521 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.068 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 4.73 seconds