Wall clock time and date at job start Fri Apr 10 2020 17:17:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 C 1.38818 * 120.42046 * 2 1 4 4 C 1.38778 * 118.50827 * 180.02562 * 3 2 1 5 5 N 1.32123 * 119.16538 * 0.02562 * 4 3 2 6 6 C 1.32449 * 120.76878 * 359.97438 * 5 4 3 7 7 C 1.48541 * 119.18641 * 179.97438 * 6 5 4 8 8 O 1.21470 * 119.99720 * 180.02562 * 7 6 5 9 9 N 1.34771 * 119.99658 * 359.97438 * 7 6 5 10 10 C 1.46505 * 119.99622 * 180.02562 * 9 7 6 11 11 C 1.52997 * 109.47212 * 179.97438 * 10 9 7 12 12 H 1.08998 * 109.47533 * 59.99637 * 11 10 9 13 13 O 1.42905 * 109.47264 * 299.99925 * 11 10 9 14 14 C 1.52992 * 109.47482 * 179.97438 * 11 10 9 15 15 N 1.46499 * 109.47658 * 184.99947 * 14 11 10 16 16 C 1.36939 * 120.00451 * 180.02562 * 15 14 11 17 17 H 1.08002 * 119.99755 * 0.02562 * 16 15 14 18 18 C 1.38809 * 119.99895 * 179.97438 * 16 15 14 19 19 N 1.31628 * 119.99663 * 179.97438 * 18 16 15 20 20 Si 1.86797 * 120.00353 * 0.02562 * 18 16 15 21 21 H 1.48506 * 109.46957 * 89.99940 * 20 18 16 22 22 H 1.48502 * 109.47127 * 209.99941 * 20 18 16 23 23 H 1.48498 * 109.46889 * 330.00053 * 20 18 16 24 24 N 1.32098 * 120.41320 * 180.28279 * 2 1 3 25 25 H 1.09000 * 109.46606 * 89.99313 * 1 2 3 26 26 H 1.08993 * 109.46819 * 209.99478 * 1 2 3 27 27 H 1.09005 * 109.46602 * 329.99798 * 1 2 3 28 28 H 1.08007 * 120.74541 * 0.04915 * 3 2 1 29 29 H 1.08002 * 120.42039 * 180.02562 * 4 3 2 30 30 H 0.96996 * 120.00772 * 359.97438 * 9 7 6 31 31 H 1.09002 * 109.47068 * 299.99729 * 10 9 7 32 32 H 1.09001 * 109.47372 * 59.99816 * 10 9 7 33 33 H 0.96696 * 114.00036 * 299.99911 * 13 11 10 34 34 H 1.09001 * 109.47563 * 305.00337 * 14 11 10 35 35 H 1.09004 * 109.47313 * 64.99993 * 14 11 10 36 36 H 0.97002 * 119.99938 * 0.02562 * 15 14 11 37 37 H 0.97000 * 119.99838 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.2100 1.1971 0.0000 4 6 3.5970 1.1508 -0.0005 5 7 4.2020 -0.0238 -0.0016 6 6 3.5006 -1.1473 -0.0015 7 6 4.2170 -2.4485 -0.0033 8 8 3.5883 -3.4879 -0.0038 9 7 5.5644 -2.4758 -0.0054 10 6 6.2710 -3.7592 -0.0077 11 6 7.7806 -3.5103 -0.0104 12 1 8.0572 -2.9448 0.8794 13 8 8.1388 -2.7673 -1.1774 14 6 8.5185 -4.8505 -0.0121 15 7 9.9596 -4.6148 0.1056 16 6 10.8274 -5.6739 0.1250 17 1 10.4494 -6.6831 0.0531 18 6 12.1929 -5.4504 0.2361 19 7 13.0269 -6.4685 0.2552 20 14 12.8467 -3.7050 0.3598 21 1 12.9163 -3.3025 1.7876 22 1 14.2040 -3.6412 -0.2392 23 1 11.9394 -2.7837 -0.3705 24 7 2.1758 -1.1392 -0.0056 25 1 -0.3632 0.0001 -1.0277 26 1 -0.3633 -0.8900 0.5137 27 1 -0.3633 0.8900 0.5139 28 1 1.6891 2.1432 0.0008 29 1 4.1746 2.0633 -0.0001 30 1 6.0664 -1.6459 -0.0061 31 1 5.9975 -4.3261 0.8823 32 1 5.9947 -4.3245 -0.8977 33 1 7.9213 -3.2113 -2.0084 34 1 8.1790 -5.4534 0.8301 35 1 8.3116 -5.3780 -0.9433 36 1 10.2991 -3.7084 0.1699 37 1 13.9812 -6.3123 0.3324 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001568556889.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:17:53 Heat of formation + Delta-G solvation = -52.202938 kcal Electronic energy + Delta-G solvation = -20761.576529 eV Core-core repulsion = 17345.416765 eV Total energy + Delta-G solvation = -3416.159764 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 280.132 amu Computer time = 2.68 seconds Orbital eigenvalues (eV) -42.35078 -40.58685 -38.99116 -36.26996 -35.82224 -35.15547 -33.74476 -33.47860 -31.08768 -29.52833 -27.79471 -26.02505 -24.17487 -23.93738 -22.87794 -21.86039 -19.85448 -19.27036 -18.83278 -17.58597 -17.34596 -16.92794 -16.66490 -16.52005 -16.47969 -15.65336 -15.51460 -15.40027 -15.05537 -14.73642 -14.29224 -14.18800 -14.05902 -13.82101 -13.38068 -13.22329 -13.19109 -12.80463 -12.37792 -12.23317 -11.89116 -11.83036 -11.75479 -11.42876 -11.04891 -10.95788 -10.64980 -10.43144 -10.25896 -9.31918 -8.03478 -5.37438 -0.65494 0.01628 1.40547 1.42882 1.47438 1.51381 1.59293 2.49085 2.72108 2.81492 3.07643 3.26783 3.37381 3.50383 3.50899 3.80874 3.96034 4.01696 4.06061 4.18507 4.30215 4.56897 4.57579 4.66255 4.70660 4.76933 4.92798 5.05017 5.13867 5.18960 5.35423 5.73728 5.88825 6.19917 6.22445 6.73704 6.82409 6.98826 7.07287 7.82473 8.01729 9.17736 Molecular weight = 280.13amu Principal moments of inertia in cm(-1) A = 0.039795 B = 0.002895 C = 0.002733 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 703.439738 B = 9668.003324 C =10241.754322 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.105 4.105 2 C 0.150 3.850 3 C -0.184 4.184 4 C 0.139 3.861 5 N -0.509 5.509 6 C 0.262 3.738 7 C 0.578 3.422 8 O -0.550 6.550 9 N -0.686 5.686 10 C 0.098 3.902 11 C 0.106 3.894 12 H 0.111 0.889 13 O -0.562 6.562 14 C 0.125 3.875 15 N -0.753 5.753 16 C -0.237 4.237 17 H 0.057 0.943 18 C -0.065 4.065 19 N -0.983 5.983 20 Si 0.958 3.042 21 H -0.277 1.277 22 H -0.296 1.296 23 H -0.251 1.251 24 N -0.508 5.508 25 H 0.098 0.902 26 H 0.071 0.929 27 H 0.117 0.883 28 H 0.201 0.799 29 H 0.217 0.783 30 H 0.422 0.578 31 H 0.084 0.916 32 H 0.081 0.919 33 H 0.388 0.612 34 H 0.041 0.959 35 H 0.037 0.963 36 H 0.369 0.631 37 H 0.258 0.742 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.502 22.897 -1.114 35.041 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.004 3.996 3 C -0.205 4.205 4 C -0.025 4.025 5 N -0.227 5.227 6 C -0.008 4.008 7 C 0.360 3.640 8 O -0.426 6.426 9 N -0.339 5.339 10 C -0.027 4.027 11 C 0.046 3.954 12 H 0.128 0.872 13 O -0.369 6.369 14 C -0.002 4.002 15 N -0.399 5.399 16 C -0.368 4.368 17 H 0.075 0.925 18 C -0.256 4.256 19 N -0.634 5.634 20 Si 0.784 3.216 21 H -0.203 1.203 22 H -0.223 1.223 23 H -0.176 1.176 24 N -0.226 5.226 25 H 0.117 0.883 26 H 0.090 0.910 27 H 0.135 0.865 28 H 0.218 0.782 29 H 0.233 0.767 30 H 0.260 0.740 31 H 0.102 0.898 32 H 0.099 0.901 33 H 0.237 0.763 34 H 0.059 0.941 35 H 0.055 0.945 36 H 0.203 0.797 37 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -26.211 21.442 -0.689 33.870 hybrid contribution 0.546 0.857 -0.285 1.056 sum -25.664 22.299 -0.975 34.012 Atomic orbital electron populations 1.20950 0.84965 1.05345 1.04930 1.22601 0.99585 0.87694 0.89724 1.23539 0.96266 1.01633 0.99088 1.24112 0.93422 0.95981 0.88999 1.68296 1.41959 0.99389 1.13064 1.22451 0.87833 0.92853 0.97634 1.17600 0.82572 0.86478 0.77320 1.90779 1.67721 1.33777 1.50317 1.45566 1.04794 1.11077 1.72442 1.22033 0.91403 0.85129 1.04105 1.22142 0.90528 0.92650 0.90038 0.87170 1.86542 1.85856 1.48069 1.16474 1.21390 0.83185 0.95795 0.99850 1.42559 1.02446 1.04594 1.90319 1.19042 0.88363 0.88214 1.41177 0.92451 1.25539 0.96153 1.01445 1.02494 1.69893 1.02574 1.31641 1.59276 0.85365 0.77431 0.80506 0.78249 1.20344 1.22278 1.17552 1.68032 1.08768 1.33084 1.12679 0.88327 0.90999 0.86488 0.78163 0.76676 0.74000 0.89770 0.90109 0.76270 0.94086 0.94497 0.79742 0.93286 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.77 10.22 71.24 0.73 -0.04 16 2 C 0.15 2.20 6.82 42.66 0.29 2.49 16 3 C -0.18 -1.44 9.87 22.54 0.22 -1.22 16 4 C 0.14 1.50 11.30 84.78 0.96 2.45 16 5 N -0.51 -10.02 9.58 -189.09 -1.81 -11.83 16 6 C 0.26 6.70 7.60 137.68 1.05 7.74 16 7 C 0.58 16.92 7.85 86.99 0.68 17.61 16 8 O -0.55 -19.94 16.86 -3.62 -0.06 -20.00 16 9 N -0.69 -16.85 5.44 -465.30 -2.53 -19.38 16 10 C 0.10 2.40 5.34 86.38 0.46 2.86 16 11 C 0.11 2.89 3.08 30.59 0.09 2.98 16 12 H 0.11 2.96 8.14 -2.39 -0.02 2.94 16 13 O -0.56 -15.28 13.03 -148.98 -1.94 -17.22 16 14 C 0.12 4.46 5.90 86.38 0.51 4.97 16 15 N -0.75 -34.95 5.35 -343.46 -1.84 -36.79 16 16 C -0.24 -13.64 10.47 84.03 0.88 -12.76 16 17 H 0.06 3.60 8.06 -2.91 -0.02 3.58 16 18 C -0.06 -3.86 5.50 84.86 0.47 -3.40 16 19 N -0.98 -63.68 13.97 21.65 0.30 -63.37 16 20 Si 0.96 46.08 27.74 68.60 1.90 47.98 16 21 H -0.28 -12.95 7.11 99.48 0.71 -12.25 16 22 H -0.30 -14.40 7.11 99.48 0.71 -13.69 16 23 H -0.25 -11.07 6.52 99.48 0.65 -10.42 16 24 N -0.51 -12.59 10.07 -177.23 -1.78 -14.37 16 25 H 0.10 0.53 8.14 -2.39 -0.02 0.51 16 26 H 0.07 0.76 8.14 -2.39 -0.02 0.74 16 27 H 0.12 0.05 8.10 -2.38 -0.02 0.03 16 28 H 0.20 -0.40 8.06 -2.91 -0.02 -0.42 16 29 H 0.22 0.44 8.06 -2.91 -0.02 0.41 16 30 H 0.42 9.43 7.65 -92.71 -0.71 8.72 16 31 H 0.08 2.11 8.14 -2.39 -0.02 2.10 16 32 H 0.08 1.97 8.14 -2.39 -0.02 1.95 16 33 H 0.39 8.51 9.05 -74.06 -0.67 7.84 16 34 H 0.04 1.47 8.14 -2.39 -0.02 1.45 16 35 H 0.04 1.31 8.14 -2.39 -0.02 1.29 16 36 H 0.37 16.61 5.53 -92.71 -0.51 16.10 16 37 H 0.26 15.90 8.31 -92.71 -0.77 15.13 16 Total: -1.00 -83.03 326.52 -2.25 -85.28 By element: Atomic # 1 Polarization: 26.84 SS G_CDS: -0.83 Total: 26.01 kcal Atomic # 6 Polarization: 17.35 SS G_CDS: 6.34 Total: 23.69 kcal Atomic # 7 Polarization: -138.08 SS G_CDS: -7.66 Total: -145.74 kcal Atomic # 8 Polarization: -35.21 SS G_CDS: -2.00 Total: -37.22 kcal Atomic # 14 Polarization: 46.08 SS G_CDS: 1.90 Total: 47.98 kcal Total: -83.03 -2.25 -85.28 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001568556889.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.076 kcal (2) G-P(sol) polarization free energy of solvation -83.034 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.958 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.245 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.279 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.203 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.68 seconds