Wall clock time and date at job start Fri Apr 10 2020 17:19:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.50698 * 109.90977 * 2 1 4 4 O 1.21302 * 119.99766 * 264.64483 * 3 2 1 5 5 N 1.34770 * 120.00229 * 84.64704 * 3 2 1 6 6 C 1.40589 * 119.99943 * 180.02562 * 5 3 2 7 7 C 1.40649 * 126.08648 * 359.97438 * 6 5 3 8 8 N 1.30909 * 108.39249 * 179.71639 * 7 6 5 9 9 N 1.40071 * 108.40015 * 0.44111 * 8 7 6 10 10 C 1.37329 * 126.06677 * 179.81097 * 9 8 7 11 11 H 1.07992 * 120.00412 * 185.48113 * 10 9 8 12 12 C 1.38994 * 119.99544 * 5.48755 * 10 9 8 13 13 N 1.31287 * 120.00345 * 354.02338 * 12 10 9 14 14 Si 1.86805 * 119.99368 * 174.29377 * 12 10 9 15 15 H 1.48497 * 109.47029 * 274.73724 * 14 12 10 16 16 H 1.48495 * 109.47310 * 34.73847 * 14 12 10 17 17 H 1.48498 * 109.46575 * 154.74140 * 14 12 10 18 18 C 1.35681 * 126.08222 * 179.97438 * 6 5 3 19 19 C 1.53998 * 110.08257 * 238.78492 * 2 1 3 20 20 C 1.54595 * 105.14218 * 239.33213 * 19 2 1 21 21 H 1.08996 * 110.72140 * 96.40163 * 20 19 2 22 22 O 1.42894 * 110.72357 * 219.68648 * 20 19 2 23 23 C 1.54940 * 102.92122 * 338.04271 * 20 19 2 24 24 N 1.47903 * 109.91405 * 121.10298 * 2 1 3 25 25 H 1.09001 * 109.46697 * 60.70631 * 1 2 3 26 26 H 1.09001 * 109.47269 * 180.70177 * 1 2 3 27 27 H 1.08994 * 109.47327 * 300.70653 * 1 2 3 28 28 H 0.97000 * 120.00340 * 359.97438 * 5 3 2 29 29 H 1.07999 * 125.80412 * 0.02562 * 7 6 5 30 30 H 0.97000 * 119.99895 * 180.02562 * 13 12 10 31 31 H 1.07998 * 126.24420 * 359.97404 * 18 6 5 32 32 H 1.09000 * 110.30930 * 358.25048 * 19 2 1 33 33 H 1.09006 * 110.30473 * 120.41636 * 19 2 1 34 34 H 0.96703 * 114.00038 * 174.96197 * 22 20 19 35 35 H 1.08994 * 110.66764 * 278.97590 * 23 20 19 36 36 H 1.09001 * 110.80437 * 155.91164 * 23 20 19 37 37 H 1.00901 * 111.00314 * 24.36342 * 24 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0432 1.4169 0.0000 4 8 2.3419 1.9537 -1.0459 5 7 2.1703 2.0876 1.1620 6 6 2.6486 3.4097 1.1619 7 6 3.0303 4.1524 0.0302 8 7 3.4138 5.3400 0.4256 9 7 3.3023 5.3988 1.8207 10 6 3.6135 6.4773 2.6118 11 1 3.5743 6.3874 3.6873 12 6 3.9788 7.6848 2.0283 13 7 4.1406 7.7631 0.7277 14 14 4.2471 9.1944 3.0954 15 1 2.9466 9.8713 3.3311 16 1 4.8340 8.7832 4.3960 17 1 5.1738 10.1285 2.4073 18 6 2.8240 4.1961 2.2536 19 6 2.0588 -0.7496 -1.2370 20 6 2.9123 -1.9084 -0.6726 21 1 2.3303 -2.8288 -0.6257 22 8 4.0932 -2.0945 -1.4555 23 6 3.2708 -1.4132 0.7511 24 7 2.0338 -0.7183 1.1907 25 1 -0.3633 0.5028 -0.8963 26 1 -0.3634 -1.0276 0.0126 27 1 -0.3634 0.5247 0.8835 28 1 1.9311 1.6585 1.9984 29 1 3.0060 3.8041 -0.9918 30 1 4.3959 8.6057 0.3206 31 1 2.6217 3.9207 3.2781 32 1 1.2291 -1.1422 -1.8247 33 1 2.6748 -0.0876 -1.8457 34 1 4.7005 -2.7575 -1.0996 35 1 4.1106 -0.7192 0.7169 36 1 3.4943 -2.2535 1.4084 37 1 1.3502 -1.3777 1.5313 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001576356567.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:19:00 Heat of formation + Delta-G solvation = 7.381547 kcal Electronic energy + Delta-G solvation = -21974.060542 eV Core-core repulsion = 18560.484556 eV Total energy + Delta-G solvation = -3413.575987 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 280.132 amu Computer time = 3.84 seconds Orbital eigenvalues (eV) -40.46540 -39.35300 -37.78923 -35.83913 -34.09990 -33.02222 -31.29086 -30.14131 -29.34867 -27.64780 -25.66982 -24.87468 -23.04263 -21.37311 -20.73203 -19.41496 -19.07285 -17.85736 -17.41230 -16.65654 -15.85762 -15.37980 -15.18636 -14.82180 -14.47929 -14.28108 -13.84876 -13.77503 -13.49899 -13.12912 -12.83635 -12.48777 -12.23682 -11.96981 -11.83424 -11.61015 -11.33066 -11.22405 -11.18263 -10.97554 -10.86296 -10.50290 -10.47514 -10.00293 -9.31945 -9.07254 -8.74105 -8.66534 -7.97515 -6.58005 -6.49894 -4.15696 2.88964 3.07874 3.09237 3.13486 3.55167 3.72529 3.78934 3.94225 4.27218 4.42924 4.51836 4.59086 4.76045 4.83310 4.99797 5.05236 5.08058 5.26468 5.35336 5.56901 5.58357 5.74081 5.86166 5.95495 6.06204 6.32356 6.39568 6.58067 6.99930 7.03819 7.06933 7.25376 7.35518 7.43434 7.93763 8.30795 8.44239 8.72121 9.02460 9.46155 9.75426 10.46548 Molecular weight = 280.13amu Principal moments of inertia in cm(-1) A = 0.037060 B = 0.003681 C = 0.003639 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 755.353990 B = 7604.606964 C = 7692.550138 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.086 3.914 3 C 0.518 3.482 4 O -0.541 6.541 5 N -0.607 5.607 6 C -0.058 4.058 7 C -0.035 4.035 8 N -0.261 5.261 9 N -0.145 5.145 10 C -0.325 4.325 11 H 0.115 0.885 12 C 0.047 3.953 13 N -0.771 5.771 14 Si 0.934 3.066 15 H -0.270 1.270 16 H -0.265 1.265 17 H -0.277 1.277 18 C -0.082 4.082 19 C -0.132 4.132 20 C 0.069 3.931 21 H 0.062 0.938 22 O -0.556 6.556 23 C 0.011 3.989 24 N -0.657 5.657 25 H 0.074 0.926 26 H 0.065 0.935 27 H 0.071 0.929 28 H 0.403 0.597 29 H 0.175 0.825 30 H 0.274 0.726 31 H 0.145 0.855 32 H 0.080 0.920 33 H 0.105 0.895 34 H 0.377 0.623 35 H 0.092 0.908 36 H 0.080 0.920 37 H 0.343 0.657 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.124 -18.195 2.620 19.083 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.008 4.008 3 C 0.302 3.698 4 O -0.418 6.418 5 N -0.248 5.248 6 C -0.164 4.164 7 C -0.210 4.210 8 N -0.093 5.093 9 N 0.087 4.913 10 C -0.457 4.457 11 H 0.133 0.867 12 C -0.170 4.170 13 N -0.398 5.398 14 Si 0.757 3.243 15 H -0.196 1.196 16 H -0.189 1.189 17 H -0.202 1.202 18 C -0.233 4.233 19 C -0.171 4.171 20 C 0.009 3.991 21 H 0.080 0.920 22 O -0.360 6.360 23 C -0.119 4.119 24 N -0.288 5.288 25 H 0.093 0.907 26 H 0.084 0.916 27 H 0.090 0.910 28 H 0.238 0.762 29 H 0.192 0.808 30 H 0.085 0.915 31 H 0.162 0.838 32 H 0.098 0.902 33 H 0.124 0.876 34 H 0.224 0.776 35 H 0.111 0.889 36 H 0.098 0.902 37 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges -4.360 -15.448 1.306 16.105 hybrid contribution -0.445 -1.632 1.094 2.015 sum -4.805 -17.080 2.400 17.905 Atomic orbital electron populations 1.22014 0.91785 1.02621 1.04029 1.21782 0.96068 0.93099 0.89852 1.19787 0.79410 0.86799 0.83766 1.90590 1.50663 1.68705 1.31829 1.42378 1.61939 1.11617 1.08842 1.17351 1.18246 0.86419 0.94355 1.24097 1.05878 0.92152 0.98910 1.78230 1.24957 1.17469 0.88600 1.44526 1.34783 1.07303 1.04639 1.19835 1.48197 0.87475 0.90206 0.86711 1.25625 0.95639 0.99565 0.96166 1.70222 1.33656 1.26325 1.09563 0.85866 0.78756 0.80051 0.79579 1.19572 1.18900 1.20179 1.21268 1.15407 0.89459 0.97199 1.22728 0.99870 0.96773 0.97707 1.23456 0.87027 0.97435 0.91220 0.92011 1.86589 1.32789 1.64014 1.52622 1.23891 0.94919 0.98612 0.94446 1.62624 1.07095 1.29858 1.29262 0.90715 0.91590 0.91024 0.76243 0.80845 0.91533 0.83764 0.90169 0.87612 0.77606 0.88934 0.90162 0.83945 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.47 8.25 37.16 0.31 -1.16 16 2 C 0.09 1.09 1.07 -131.68 -0.14 0.95 16 3 C 0.52 9.51 6.67 -10.99 -0.07 9.43 16 4 O -0.54 -12.12 12.73 5.54 0.07 -12.05 16 5 N -0.61 -11.51 5.37 -10.00 -0.05 -11.56 16 6 C -0.06 -1.40 6.90 -83.84 -0.58 -1.98 16 7 C -0.03 -0.95 10.85 -17.04 -0.18 -1.14 16 8 N -0.26 -7.85 10.42 30.80 0.32 -7.53 16 9 N -0.14 -4.09 3.74 -11.41 -0.04 -4.13 16 10 C -0.32 -8.82 10.24 -14.81 -0.15 -8.98 16 11 H 0.12 2.78 7.84 -52.49 -0.41 2.37 16 12 C 0.05 1.24 5.50 -17.50 -0.10 1.15 16 13 N -0.77 -22.05 11.84 55.50 0.66 -21.39 16 14 Si 0.93 19.32 29.56 -169.99 -5.02 14.29 16 15 H -0.27 -5.50 7.11 56.52 0.40 -5.10 16 16 H -0.26 -5.23 7.11 56.52 0.40 -4.83 16 17 H -0.28 -5.67 7.11 56.52 0.40 -5.27 16 18 C -0.08 -2.02 11.49 -16.39 -0.19 -2.21 16 19 C -0.13 -1.66 5.85 -25.37 -0.15 -1.81 16 20 C 0.07 0.70 4.44 -24.87 -0.11 0.59 16 21 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 22 O -0.56 -6.19 13.40 -35.23 -0.47 -6.67 16 23 C 0.01 0.11 7.25 -1.89 -0.01 0.10 16 24 N -0.66 -6.66 6.33 -97.62 -0.62 -7.28 16 25 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 26 H 0.07 0.47 8.12 -51.93 -0.42 0.05 16 27 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 28 H 0.40 6.39 8.25 -40.82 -0.34 6.06 16 29 H 0.17 4.75 5.92 -52.49 -0.31 4.44 16 30 H 0.27 7.17 8.31 -40.82 -0.34 6.83 16 31 H 0.14 2.97 8.06 -52.49 -0.42 2.55 16 32 H 0.08 0.86 7.69 -51.93 -0.40 0.46 16 33 H 0.11 1.76 6.67 -51.93 -0.35 1.41 16 34 H 0.38 2.33 9.11 45.56 0.42 2.75 16 35 H 0.09 1.18 8.14 -51.93 -0.42 0.76 16 36 H 0.08 0.56 8.14 -51.93 -0.42 0.14 16 37 H 0.34 2.50 8.39 -39.29 -0.33 2.17 16 LS Contribution 312.28 15.07 4.71 4.71 Total: -1.00 -35.51 312.28 -5.65 -41.16 By element: Atomic # 1 Polarization: 19.33 SS G_CDS: -3.81 Total: 15.52 kcal Atomic # 6 Polarization: -3.69 SS G_CDS: -1.38 Total: -5.07 kcal Atomic # 7 Polarization: -52.15 SS G_CDS: 0.26 Total: -51.89 kcal Atomic # 8 Polarization: -18.32 SS G_CDS: -0.40 Total: -18.72 kcal Atomic # 14 Polarization: 19.32 SS G_CDS: -5.02 Total: 14.29 kcal Total LS contribution 4.71 Total: 4.71 kcal Total: -35.51 -5.65 -41.16 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001576356567.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.540 kcal (2) G-P(sol) polarization free energy of solvation -35.510 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.030 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.649 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.159 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.382 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.84 seconds