Wall clock time and date at job start Fri Apr 10 2020 17:18:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.50698 * 109.90977 * 2 1 4 4 O 1.21302 * 119.99766 * 264.64483 * 3 2 1 5 5 N 1.34770 * 120.00229 * 84.64704 * 3 2 1 6 6 C 1.40589 * 119.99943 * 180.02562 * 5 3 2 7 7 C 1.40649 * 126.08648 * 359.97438 * 6 5 3 8 8 N 1.30909 * 108.39249 * 179.71639 * 7 6 5 9 9 N 1.40071 * 108.40015 * 0.44111 * 8 7 6 10 10 C 1.37329 * 126.06677 * 179.81097 * 9 8 7 11 11 H 1.07992 * 120.00412 * 185.48113 * 10 9 8 12 12 C 1.38994 * 119.99544 * 5.48755 * 10 9 8 13 13 N 1.31287 * 120.00345 * 354.02338 * 12 10 9 14 14 Si 1.86805 * 119.99368 * 174.29377 * 12 10 9 15 15 H 1.48497 * 109.47029 * 274.73724 * 14 12 10 16 16 H 1.48495 * 109.47310 * 34.73847 * 14 12 10 17 17 H 1.48498 * 109.46575 * 154.74140 * 14 12 10 18 18 C 1.35681 * 126.08222 * 179.97438 * 6 5 3 19 19 C 1.53998 * 110.08257 * 238.78492 * 2 1 3 20 20 C 1.54595 * 105.14218 * 239.33213 * 19 2 1 21 21 H 1.08996 * 110.72140 * 96.40163 * 20 19 2 22 22 O 1.42894 * 110.72357 * 219.68648 * 20 19 2 23 23 C 1.54940 * 102.92122 * 338.04271 * 20 19 2 24 24 N 1.47903 * 109.91405 * 121.10298 * 2 1 3 25 25 H 1.09001 * 109.46697 * 60.70631 * 1 2 3 26 26 H 1.09001 * 109.47269 * 180.70177 * 1 2 3 27 27 H 1.08994 * 109.47327 * 300.70653 * 1 2 3 28 28 H 0.97000 * 120.00340 * 359.97438 * 5 3 2 29 29 H 1.07999 * 125.80412 * 0.02562 * 7 6 5 30 30 H 0.97000 * 119.99895 * 180.02562 * 13 12 10 31 31 H 1.07998 * 126.24420 * 359.97404 * 18 6 5 32 32 H 1.09000 * 110.30930 * 358.25048 * 19 2 1 33 33 H 1.09006 * 110.30473 * 120.41636 * 19 2 1 34 34 H 0.96703 * 114.00038 * 174.96197 * 22 20 19 35 35 H 1.08994 * 110.66764 * 278.97590 * 23 20 19 36 36 H 1.09001 * 110.80437 * 155.91164 * 23 20 19 37 37 H 1.00901 * 111.00314 * 24.36342 * 24 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0432 1.4169 0.0000 4 8 2.3419 1.9537 -1.0459 5 7 2.1703 2.0876 1.1620 6 6 2.6486 3.4097 1.1619 7 6 3.0303 4.1524 0.0302 8 7 3.4138 5.3400 0.4256 9 7 3.3023 5.3988 1.8207 10 6 3.6135 6.4773 2.6118 11 1 3.5743 6.3874 3.6873 12 6 3.9788 7.6848 2.0283 13 7 4.1406 7.7631 0.7277 14 14 4.2471 9.1944 3.0954 15 1 2.9466 9.8713 3.3311 16 1 4.8340 8.7832 4.3960 17 1 5.1738 10.1285 2.4073 18 6 2.8240 4.1961 2.2536 19 6 2.0588 -0.7496 -1.2370 20 6 2.9123 -1.9084 -0.6726 21 1 2.3303 -2.8288 -0.6257 22 8 4.0932 -2.0945 -1.4555 23 6 3.2708 -1.4132 0.7511 24 7 2.0338 -0.7183 1.1907 25 1 -0.3633 0.5028 -0.8963 26 1 -0.3634 -1.0276 0.0126 27 1 -0.3634 0.5247 0.8835 28 1 1.9311 1.6585 1.9984 29 1 3.0060 3.8041 -0.9918 30 1 4.3959 8.6057 0.3206 31 1 2.6217 3.9207 3.2781 32 1 1.2291 -1.1422 -1.8247 33 1 2.6748 -0.0876 -1.8457 34 1 4.7005 -2.7575 -1.0996 35 1 4.1106 -0.7192 0.7169 36 1 3.4943 -2.2535 1.4084 37 1 1.3502 -1.3777 1.5313 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001576356567.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:18:59 Heat of formation + Delta-G solvation = -24.060814 kcal Electronic energy + Delta-G solvation = -21975.423985 eV Core-core repulsion = 18560.484556 eV Total energy + Delta-G solvation = -3414.939430 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 280.132 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -41.89871 -41.04397 -39.10236 -36.76830 -35.91002 -34.89261 -32.34867 -32.05040 -30.32509 -29.48548 -26.99072 -26.35701 -24.35442 -22.83189 -22.25358 -21.21819 -20.51807 -19.22826 -18.71060 -17.89854 -17.41864 -16.97927 -16.72469 -15.91545 -15.86620 -15.56899 -15.27202 -15.03130 -14.93674 -14.76724 -14.47591 -13.51401 -13.45870 -13.30042 -13.13573 -12.96302 -12.85080 -12.78223 -12.69660 -12.18610 -12.08817 -11.80817 -11.72968 -11.32766 -10.98487 -10.83682 -10.63901 -10.09671 -9.68543 -8.49712 -8.46864 -6.23918 1.22225 1.39885 1.53297 1.58013 1.86990 2.07521 2.33744 2.53413 2.83812 2.91005 3.08434 3.46976 3.58511 3.71957 3.89536 4.07963 4.24893 4.27251 4.44076 4.56386 4.61717 4.71866 4.81367 4.86024 5.00070 5.01004 5.07306 5.10462 5.18533 5.29850 5.46917 5.57661 5.96879 6.32878 6.42645 6.73945 6.85085 6.88693 7.44715 7.49913 7.69061 8.52847 Molecular weight = 280.13amu Principal moments of inertia in cm(-1) A = 0.037060 B = 0.003681 C = 0.003639 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 755.353990 B = 7604.606964 C = 7692.550138 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.100 3.900 3 C 0.510 3.490 4 O -0.587 6.587 5 N -0.600 5.600 6 C -0.045 4.045 7 C -0.063 4.063 8 N -0.311 5.311 9 N -0.167 5.167 10 C -0.357 4.357 11 H 0.142 0.858 12 C -0.006 4.006 13 N -0.826 5.826 14 Si 1.021 2.979 15 H -0.263 1.263 16 H -0.244 1.244 17 H -0.277 1.277 18 C -0.081 4.081 19 C -0.139 4.139 20 C 0.076 3.924 21 H 0.102 0.898 22 O -0.584 6.584 23 C 0.014 3.986 24 N -0.655 5.655 25 H 0.059 0.941 26 H 0.108 0.892 27 H 0.075 0.925 28 H 0.421 0.579 29 H 0.162 0.838 30 H 0.276 0.724 31 H 0.187 0.813 32 H 0.101 0.899 33 H 0.055 0.945 34 H 0.397 0.603 35 H 0.054 0.946 36 H 0.119 0.881 37 H 0.368 0.632 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.300 -20.479 5.473 22.114 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C 0.006 3.994 3 C 0.297 3.703 4 O -0.467 6.467 5 N -0.244 5.244 6 C -0.151 4.151 7 C -0.238 4.238 8 N -0.143 5.143 9 N 0.064 4.936 10 C -0.487 4.487 11 H 0.159 0.841 12 C -0.218 4.218 13 N -0.454 5.454 14 Si 0.840 3.160 15 H -0.187 1.187 16 H -0.167 1.167 17 H -0.202 1.202 18 C -0.231 4.231 19 C -0.178 4.178 20 C 0.016 3.984 21 H 0.120 0.880 22 O -0.392 6.392 23 C -0.116 4.116 24 N -0.289 5.289 25 H 0.078 0.922 26 H 0.126 0.874 27 H 0.094 0.906 28 H 0.259 0.741 29 H 0.179 0.821 30 H 0.086 0.914 31 H 0.204 0.796 32 H 0.119 0.881 33 H 0.074 0.926 34 H 0.248 0.752 35 H 0.072 0.928 36 H 0.138 0.862 37 H 0.189 0.811 Dipole moment (debyes) X Y Z Total from point charges -5.559 -17.824 4.199 19.137 hybrid contribution -0.082 -1.067 0.158 1.081 sum -5.641 -18.890 4.357 20.190 Atomic orbital electron populations 1.22049 0.89259 1.05253 1.03534 1.21574 0.97589 0.89170 0.91112 1.21059 0.77687 0.89018 0.82553 1.90574 1.52138 1.70423 1.33547 1.42382 1.61944 1.09767 1.10268 1.17467 1.16352 0.88319 0.93010 1.24090 1.07491 0.92721 0.99519 1.78125 1.26813 1.18905 0.90486 1.44837 1.35850 1.08802 1.04134 1.20637 1.48781 0.87857 0.91472 0.84116 1.26917 0.94332 1.03048 0.97484 1.70411 1.35362 1.27426 1.12199 0.84585 0.78820 0.74746 0.77887 1.18743 1.16683 1.20237 1.21980 1.13888 0.88180 0.99050 1.22785 1.00507 0.97138 0.97408 1.23523 0.86752 0.97770 0.90362 0.88034 1.86542 1.33836 1.65256 1.53595 1.23860 0.93429 0.98811 0.95453 1.62420 1.07829 1.30848 1.27823 0.92191 0.87379 0.90632 0.74108 0.82075 0.91407 0.79563 0.88073 0.92578 0.75214 0.92773 0.86243 0.81121 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.46 8.25 71.98 0.59 -1.87 16 2 C 0.10 2.36 1.07 2.93 0.00 2.36 16 3 C 0.51 18.98 6.67 87.66 0.58 19.57 16 4 O -0.59 -27.91 12.73 -3.10 -0.04 -27.95 16 5 N -0.60 -22.60 5.37 -303.94 -1.63 -24.24 16 6 C -0.05 -2.22 6.90 37.73 0.26 -1.96 16 7 C -0.06 -3.67 10.85 85.42 0.93 -2.74 16 8 N -0.31 -19.65 10.42 -56.47 -0.59 -20.23 16 9 N -0.17 -9.65 3.74 -190.01 -0.71 -10.36 16 10 C -0.36 -19.45 10.24 84.01 0.86 -18.59 16 11 H 0.14 6.64 7.84 -2.91 -0.02 6.61 16 12 C -0.01 -0.34 5.50 84.96 0.47 0.13 16 13 N -0.83 -49.11 11.84 21.66 0.26 -48.85 16 14 Si 1.02 39.44 29.56 68.60 2.03 41.47 16 15 H -0.26 -9.74 7.11 99.48 0.71 -9.04 16 16 H -0.24 -8.51 7.11 99.48 0.71 -7.80 16 17 H -0.28 -10.60 7.11 99.48 0.71 -9.89 16 18 C -0.08 -3.93 11.49 83.38 0.96 -2.98 16 19 C -0.14 -3.37 5.85 31.47 0.18 -3.19 16 20 C 0.08 1.32 4.44 31.80 0.14 1.46 16 21 H 0.10 1.04 8.14 -2.39 -0.02 1.02 16 22 O -0.58 -12.29 13.40 -148.98 -2.00 -14.29 16 23 C 0.01 0.24 7.25 86.65 0.63 0.87 16 24 N -0.65 -11.11 6.33 -462.76 -2.93 -14.04 16 25 H 0.06 1.23 8.14 -2.39 -0.02 1.21 16 26 H 0.11 0.99 8.12 -2.39 -0.02 0.97 16 27 H 0.07 1.26 8.14 -2.39 -0.02 1.24 16 28 H 0.42 12.56 8.25 -92.71 -0.77 11.79 16 29 H 0.16 9.58 5.92 -2.91 -0.02 9.56 16 30 H 0.28 15.08 8.31 -92.71 -0.77 14.31 16 31 H 0.19 7.21 8.06 -2.91 -0.02 7.18 16 32 H 0.10 1.96 7.69 -2.39 -0.02 1.95 16 33 H 0.06 1.96 6.67 -2.38 -0.02 1.94 16 34 H 0.40 4.17 9.11 -74.06 -0.67 3.50 16 35 H 0.05 1.35 8.14 -2.39 -0.02 1.33 16 36 H 0.12 1.11 8.14 -2.39 -0.02 1.09 16 37 H 0.37 3.45 8.39 -89.69 -0.75 2.70 16 Total: -1.00 -84.68 312.28 -1.06 -85.74 By element: Atomic # 1 Polarization: 40.74 SS G_CDS: -1.06 Total: 39.68 kcal Atomic # 6 Polarization: -12.55 SS G_CDS: 5.61 Total: -6.94 kcal Atomic # 7 Polarization: -112.11 SS G_CDS: -5.60 Total: -117.71 kcal Atomic # 8 Polarization: -40.21 SS G_CDS: -2.04 Total: -42.24 kcal Atomic # 14 Polarization: 39.44 SS G_CDS: 2.03 Total: 41.47 kcal Total: -84.68 -1.06 -85.74 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001576356567.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.680 kcal (2) G-P(sol) polarization free energy of solvation -84.678 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.998 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.062 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.741 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.061 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds