Wall clock time and date at job start Fri Apr 10 2020 17:19:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.38041 * 126.29485 * 2 1 4 4 C 1.47429 * 126.41472 * 0.04675 * 3 2 1 5 5 O 1.21607 * 119.99933 * 0.02562 * 4 3 2 6 6 N 1.34775 * 120.00281 * 180.02562 * 4 3 2 7 7 C 1.46496 * 120.00258 * 180.02562 * 6 4 3 8 8 H 1.09005 * 110.39847 * 325.70379 * 7 6 4 9 9 C 1.54304 * 110.45008 * 203.26338 * 7 6 4 10 10 N 1.48206 * 105.06363 * 240.48193 * 9 7 6 11 11 O 1.47741 * 105.38322 * 24.29936 * 10 9 7 12 12 C 1.44942 * 104.65129 * 319.54496 * 11 10 9 13 13 C 1.41289 * 107.17197 * 180.02562 * 3 2 1 14 14 N 1.30444 * 108.02281 * 359.73311 * 13 3 2 15 15 N 1.34266 * 126.28930 * 180.02562 * 2 1 3 16 16 C 1.46493 * 125.75313 * 359.95435 * 15 2 1 17 17 C 1.50706 * 109.47128 * 90.00356 * 16 15 2 18 18 H 1.08005 * 119.99758 * 359.97438 * 17 16 15 19 19 C 1.37871 * 120.00102 * 179.97438 * 17 16 15 20 20 N 1.31516 * 120.00217 * 0.02562 * 19 17 16 21 21 Si 1.86800 * 119.99766 * 179.97438 * 19 17 16 22 22 H 1.48501 * 109.47483 * 269.99808 * 21 19 17 23 23 H 1.48499 * 109.47134 * 30.00322 * 21 19 17 24 24 H 1.48507 * 109.46904 * 150.00145 * 21 19 17 25 25 H 1.08997 * 109.47276 * 269.98347 * 1 2 3 26 26 H 1.09000 * 109.46611 * 29.98500 * 1 2 3 27 27 H 1.09000 * 109.46995 * 149.97314 * 1 2 3 28 28 H 0.96997 * 119.99857 * 0.02562 * 6 4 3 29 29 H 1.09001 * 110.31642 * 359.37752 * 9 7 6 30 30 H 1.09001 * 110.32553 * 121.57540 * 9 7 6 31 31 H 1.00904 * 111.00202 * 264.05316 * 10 9 7 32 32 H 1.09005 * 110.57628 * 280.49493 * 12 11 10 33 33 H 1.08994 * 110.63211 * 157.63374 * 12 11 10 34 34 H 1.08001 * 125.98654 * 180.02562 * 13 3 2 35 35 H 1.09001 * 109.47786 * 330.00628 * 16 15 2 36 36 H 1.09006 * 109.47401 * 210.00213 * 16 15 2 37 37 H 0.97001 * 119.99646 * 359.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3241 1.1126 0.0000 4 6 1.8859 2.5203 0.0010 5 8 0.6996 2.7878 0.0023 6 7 2.8000 3.5106 0.0003 7 6 2.3646 4.9094 0.0019 8 1 1.4450 5.0217 -0.5725 9 6 3.4718 5.8193 -0.5701 10 7 3.8071 6.7554 0.5289 11 8 3.4177 6.0569 1.7711 12 6 2.1613 5.4097 1.4494 13 6 3.6590 0.6497 -0.0006 14 7 3.6340 -0.6545 0.0048 15 7 2.3017 -1.0822 -0.0005 16 6 1.8500 -2.4758 -0.0002 17 6 1.6943 -2.9537 -1.4209 18 1 1.9098 -2.2860 -2.2420 19 6 1.2767 -4.2434 -1.6726 20 7 1.0138 -5.0564 -0.6728 21 14 1.0831 -4.8355 -3.4336 22 1 -0.3003 -4.5615 -3.8988 23 1 2.0493 -4.1202 -4.3054 24 1 1.3463 -6.2957 -3.4967 25 1 -0.3633 -0.0003 1.0276 26 1 -0.3632 0.8901 -0.5136 27 1 -0.3633 -0.8897 -0.5143 28 1 3.7462 3.2973 -0.0012 29 1 4.3453 5.2269 -0.8427 30 1 3.1010 6.3686 -1.4355 31 1 3.3040 7.6244 0.4298 32 1 1.3395 6.1244 1.4950 33 1 1.9779 4.5715 2.1215 34 1 4.5449 1.2675 -0.0004 35 1 0.8916 -2.5471 0.5142 36 1 2.5849 -3.0959 0.5133 37 1 1.1140 -4.7488 0.2417 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001579526344.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:19:19 Heat of formation + Delta-G solvation = 36.367893 kcal Electronic energy + Delta-G solvation = -21568.072648 eV Core-core repulsion = 18155.753603 eV Total energy + Delta-G solvation = -3412.319044 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 280.132 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.97073 -39.80449 -38.18223 -34.53773 -34.21582 -32.28581 -31.97365 -31.24825 -29.47873 -26.98862 -26.59793 -24.69604 -23.50704 -22.53376 -21.38139 -20.09716 -19.30373 -17.70989 -17.33819 -17.05893 -16.59818 -15.84994 -15.31920 -15.13709 -14.70409 -14.26433 -14.07365 -13.88324 -13.58760 -13.24944 -12.90232 -12.64282 -12.56429 -12.34707 -12.21754 -12.12282 -11.96705 -11.65227 -11.24395 -10.84495 -10.82618 -10.32855 -10.26181 -9.76457 -9.58864 -9.54259 -9.18378 -8.69346 -8.59668 -8.03176 -6.71429 -4.48330 2.01022 2.64069 2.71603 2.94852 3.29516 3.32387 3.35248 3.50286 3.68770 3.93786 4.15895 4.30735 4.46276 4.64888 4.87333 4.92045 5.05243 5.10721 5.23517 5.28581 5.41111 5.49282 5.62335 5.80364 5.95640 6.00759 6.25529 6.34073 6.44659 6.47972 6.53374 6.56908 6.97376 7.49241 7.51902 7.54977 8.12388 8.23347 8.40675 8.44781 9.21002 10.66306 Molecular weight = 280.13amu Principal moments of inertia in cm(-1) A = 0.037068 B = 0.003423 C = 0.003416 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 755.187544 B = 8177.056062 C = 8195.540581 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.098 4.098 2 C 0.168 3.832 3 C -0.333 4.333 4 C 0.606 3.394 5 O -0.555 6.555 6 N -0.724 5.724 7 C 0.107 3.893 8 H 0.107 0.893 9 C 0.004 3.996 10 N -0.481 5.481 11 O -0.212 6.212 12 C -0.002 4.002 13 C 0.061 3.939 14 N -0.294 5.294 15 N -0.311 5.311 16 C 0.241 3.759 17 C -0.620 4.620 18 H 0.061 0.939 19 C 0.028 3.972 20 N -0.898 5.898 21 Si 1.079 2.921 22 H -0.283 1.283 23 H -0.286 1.286 24 H -0.280 1.280 25 H 0.077 0.923 26 H 0.097 0.903 27 H 0.082 0.918 28 H 0.403 0.597 29 H 0.105 0.895 30 H 0.093 0.907 31 H 0.342 0.658 32 H 0.072 0.928 33 H 0.108 0.892 34 H 0.178 0.822 35 H 0.046 0.954 36 H 0.048 0.952 37 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.864 19.728 0.924 19.837 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.031 3.969 3 C -0.348 4.348 4 C 0.397 3.603 5 O -0.434 6.434 6 N -0.377 5.377 7 C -0.001 4.001 8 H 0.125 0.875 9 C -0.126 4.126 10 N -0.146 5.146 11 O -0.224 6.224 12 C -0.082 4.082 13 C -0.126 4.126 14 N -0.113 5.113 15 N -0.088 5.088 16 C 0.124 3.876 17 C -0.658 4.658 18 H 0.079 0.921 19 C -0.177 4.177 20 N -0.533 5.533 21 Si 0.905 3.095 22 H -0.210 1.210 23 H -0.212 1.212 24 H -0.205 1.205 25 H 0.095 0.905 26 H 0.115 0.885 27 H 0.101 0.899 28 H 0.238 0.762 29 H 0.123 0.877 30 H 0.111 0.889 31 H 0.156 0.844 32 H 0.090 0.910 33 H 0.126 0.874 34 H 0.195 0.805 35 H 0.064 0.936 36 H 0.066 0.934 37 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 2.157 17.206 0.263 17.343 hybrid contribution -0.589 1.977 0.683 2.173 sum 1.568 19.183 0.947 19.270 Atomic orbital electron populations 1.20624 0.86766 1.04957 1.03282 1.21480 0.94977 0.86423 0.94035 1.19611 0.93188 0.92320 1.29728 1.17342 0.84952 0.83957 0.74027 1.90698 1.16654 1.84431 1.51606 1.45758 1.10147 1.04212 1.77589 1.22813 0.98798 0.82725 0.95783 0.87521 1.23843 0.98928 0.95535 0.94316 1.68952 1.49734 1.02719 0.93190 1.92270 1.37485 1.67620 1.25009 1.24503 0.88201 0.98617 0.96896 1.23762 0.96390 0.92575 0.99923 1.77157 0.98317 1.12362 1.23486 1.49107 1.02633 1.07882 1.49149 1.19888 0.95468 0.72209 1.00084 1.22143 1.51913 1.01096 0.90647 0.92120 1.25938 0.92817 0.92434 1.06555 1.70821 1.44349 1.37974 1.00151 0.83390 0.76804 0.76307 0.72978 1.20979 1.21224 1.20539 0.90475 0.88483 0.89926 0.76153 0.87733 0.88905 0.84423 0.91026 0.87422 0.80535 0.93623 0.93438 0.92070 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.74 9.34 36.00 0.34 -1.40 16 2 C 0.17 3.37 7.01 -81.60 -0.57 2.80 16 3 C -0.33 -5.91 6.13 -105.07 -0.64 -6.55 16 4 C 0.61 9.44 7.81 -12.52 -0.10 9.34 16 5 O -0.55 -9.82 14.52 5.27 0.08 -9.75 16 6 N -0.72 -8.27 5.08 -53.45 -0.27 -8.54 16 7 C 0.11 1.01 3.42 -66.46 -0.23 0.78 16 8 H 0.11 1.06 7.61 -51.93 -0.39 0.66 16 9 C 0.00 0.03 7.59 -2.42 -0.02 0.01 16 10 N -0.48 -4.03 8.43 -8.95 -0.08 -4.11 16 11 O -0.21 -2.37 12.77 -14.75 -0.19 -2.56 16 12 C 0.00 -0.02 7.65 37.95 0.29 0.27 16 13 C 0.06 1.04 11.50 -16.98 -0.20 0.84 16 14 N -0.29 -6.28 12.50 30.86 0.39 -5.89 16 15 N -0.31 -6.99 3.56 -57.77 -0.21 -7.20 16 16 C 0.24 5.92 5.09 -5.19 -0.03 5.90 16 17 C -0.62 -16.73 9.39 -34.44 -0.32 -17.05 16 18 H 0.06 1.70 7.81 -52.48 -0.41 1.29 16 19 C 0.03 0.77 5.46 -17.82 -0.10 0.67 16 20 N -0.90 -25.42 13.65 55.43 0.76 -24.66 16 21 Si 1.08 24.10 29.90 -169.99 -5.08 19.02 16 22 H -0.28 -6.06 7.11 56.52 0.40 -5.65 16 23 H -0.29 -6.23 7.11 56.52 0.40 -5.83 16 24 H -0.28 -6.21 7.11 56.52 0.40 -5.81 16 25 H 0.08 1.23 8.14 -51.93 -0.42 0.81 16 26 H 0.10 1.67 6.50 -51.93 -0.34 1.34 16 27 H 0.08 1.53 7.70 -51.93 -0.40 1.13 16 28 H 0.40 3.90 7.28 -40.82 -0.30 3.61 16 29 H 0.10 0.74 7.65 -51.93 -0.40 0.34 16 30 H 0.09 0.45 8.14 -51.93 -0.42 0.03 16 31 H 0.34 2.01 9.09 -39.29 -0.36 1.65 16 32 H 0.07 0.59 8.14 -51.93 -0.42 0.16 16 33 H 0.11 1.22 8.06 -51.93 -0.42 0.80 16 34 H 0.18 2.16 7.50 -52.49 -0.39 1.76 16 35 H 0.05 1.09 7.49 -51.93 -0.39 0.70 16 36 H 0.05 1.22 8.01 -51.93 -0.42 0.81 16 37 H 0.27 7.46 7.22 -40.82 -0.29 7.17 16 LS Contribution 318.47 15.07 4.80 4.80 Total: -1.00 -32.35 318.47 -5.95 -38.31 By element: Atomic # 1 Polarization: 9.54 SS G_CDS: -4.57 Total: 4.97 kcal Atomic # 6 Polarization: -2.81 SS G_CDS: -1.57 Total: -4.39 kcal Atomic # 7 Polarization: -50.98 SS G_CDS: 0.59 Total: -50.39 kcal Atomic # 8 Polarization: -12.20 SS G_CDS: -0.11 Total: -12.31 kcal Atomic # 14 Polarization: 24.10 SS G_CDS: -5.08 Total: 19.02 kcal Total LS contribution 4.80 Total: 4.80 kcal Total: -32.35 -5.95 -38.31 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001579526344.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.673 kcal (2) G-P(sol) polarization free energy of solvation -32.355 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.318 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.950 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.305 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.368 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds