Wall clock time and date at job start Fri Apr 10 2020 17:19:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.38041 * 126.29485 * 2 1 4 4 C 1.47429 * 126.41472 * 0.04675 * 3 2 1 5 5 O 1.21607 * 119.99933 * 0.02562 * 4 3 2 6 6 N 1.34775 * 120.00281 * 180.02562 * 4 3 2 7 7 C 1.46496 * 120.00258 * 180.02562 * 6 4 3 8 8 H 1.09005 * 110.39847 * 325.70379 * 7 6 4 9 9 C 1.54304 * 110.45008 * 203.26338 * 7 6 4 10 10 N 1.48206 * 105.06363 * 240.48193 * 9 7 6 11 11 O 1.47741 * 105.38322 * 24.29936 * 10 9 7 12 12 C 1.44942 * 104.65129 * 319.54496 * 11 10 9 13 13 C 1.41289 * 107.17197 * 180.02562 * 3 2 1 14 14 N 1.30444 * 108.02281 * 359.73311 * 13 3 2 15 15 N 1.34266 * 126.28930 * 180.02562 * 2 1 3 16 16 C 1.46493 * 125.75313 * 359.95435 * 15 2 1 17 17 C 1.50706 * 109.47128 * 90.00356 * 16 15 2 18 18 H 1.08005 * 119.99758 * 359.97438 * 17 16 15 19 19 C 1.37871 * 120.00102 * 179.97438 * 17 16 15 20 20 N 1.31516 * 120.00217 * 0.02562 * 19 17 16 21 21 Si 1.86800 * 119.99766 * 179.97438 * 19 17 16 22 22 H 1.48501 * 109.47483 * 269.99808 * 21 19 17 23 23 H 1.48499 * 109.47134 * 30.00322 * 21 19 17 24 24 H 1.48507 * 109.46904 * 150.00145 * 21 19 17 25 25 H 1.08997 * 109.47276 * 269.98347 * 1 2 3 26 26 H 1.09000 * 109.46611 * 29.98500 * 1 2 3 27 27 H 1.09000 * 109.46995 * 149.97314 * 1 2 3 28 28 H 0.96997 * 119.99857 * 0.02562 * 6 4 3 29 29 H 1.09001 * 110.31642 * 359.37752 * 9 7 6 30 30 H 1.09001 * 110.32553 * 121.57540 * 9 7 6 31 31 H 1.00904 * 111.00202 * 264.05316 * 10 9 7 32 32 H 1.09005 * 110.57628 * 280.49493 * 12 11 10 33 33 H 1.08994 * 110.63211 * 157.63374 * 12 11 10 34 34 H 1.08001 * 125.98654 * 180.02562 * 13 3 2 35 35 H 1.09001 * 109.47786 * 330.00628 * 16 15 2 36 36 H 1.09006 * 109.47401 * 210.00213 * 16 15 2 37 37 H 0.97001 * 119.99646 * 359.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3241 1.1126 0.0000 4 6 1.8859 2.5203 0.0010 5 8 0.6996 2.7878 0.0023 6 7 2.8000 3.5106 0.0003 7 6 2.3646 4.9094 0.0019 8 1 1.4450 5.0217 -0.5725 9 6 3.4718 5.8193 -0.5701 10 7 3.8071 6.7554 0.5289 11 8 3.4177 6.0569 1.7711 12 6 2.1613 5.4097 1.4494 13 6 3.6590 0.6497 -0.0006 14 7 3.6340 -0.6545 0.0048 15 7 2.3017 -1.0822 -0.0005 16 6 1.8500 -2.4758 -0.0002 17 6 1.6943 -2.9537 -1.4209 18 1 1.9098 -2.2860 -2.2420 19 6 1.2767 -4.2434 -1.6726 20 7 1.0138 -5.0564 -0.6728 21 14 1.0831 -4.8355 -3.4336 22 1 -0.3003 -4.5615 -3.8988 23 1 2.0493 -4.1202 -4.3054 24 1 1.3463 -6.2957 -3.4967 25 1 -0.3633 -0.0003 1.0276 26 1 -0.3632 0.8901 -0.5136 27 1 -0.3633 -0.8897 -0.5143 28 1 3.7462 3.2973 -0.0012 29 1 4.3453 5.2269 -0.8427 30 1 3.1010 6.3686 -1.4355 31 1 3.3040 7.6244 0.4298 32 1 1.3395 6.1244 1.4950 33 1 1.9779 4.5715 2.1215 34 1 4.5449 1.2675 -0.0004 35 1 0.8916 -2.5471 0.5142 36 1 2.5849 -3.0959 0.5133 37 1 1.1140 -4.7488 0.2417 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001579526344.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:19:18 Heat of formation + Delta-G solvation = 11.316689 kcal Electronic energy + Delta-G solvation = -21569.158949 eV Core-core repulsion = 18155.753603 eV Total energy + Delta-G solvation = -3413.405346 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 280.132 amu Computer time = 1.73 seconds Orbital eigenvalues (eV) -42.44236 -40.78733 -39.20514 -36.21677 -35.49211 -33.87176 -32.92677 -32.64135 -30.46898 -28.61962 -28.13816 -25.54609 -25.28958 -23.75705 -22.37756 -21.40322 -20.75562 -19.29719 -18.65853 -18.04975 -17.64811 -16.84993 -16.56882 -16.42553 -15.96292 -15.75598 -15.56595 -15.32764 -14.76226 -14.39845 -14.22060 -14.13017 -13.78633 -13.72813 -13.35198 -13.33560 -13.08967 -13.06379 -12.88429 -12.59513 -12.00038 -11.83872 -11.59765 -11.41637 -10.90235 -10.74240 -10.41859 -10.30728 -10.17654 -9.55112 -8.86090 -6.65199 0.56183 1.22795 1.48004 1.50682 1.56644 1.76660 1.99792 2.17754 2.42561 2.45166 2.95134 3.26179 3.46651 3.62469 3.65763 3.73816 4.02342 4.04835 4.09658 4.24699 4.42162 4.46109 4.55558 4.57898 4.61831 4.68461 4.74833 4.96946 5.04832 5.31657 5.44064 5.47299 5.55547 5.73103 5.92039 6.07801 6.29701 6.48520 6.72288 7.11807 7.22770 8.51480 Molecular weight = 280.13amu Principal moments of inertia in cm(-1) A = 0.037068 B = 0.003423 C = 0.003416 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 755.187544 B = 8177.056062 C = 8195.540581 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.090 4.090 2 C 0.147 3.853 3 C -0.330 4.330 4 C 0.609 3.391 5 O -0.577 6.577 6 N -0.706 5.706 7 C 0.105 3.895 8 H 0.106 0.894 9 C 0.011 3.989 10 N -0.482 5.482 11 O -0.241 6.241 12 C 0.001 3.999 13 C 0.082 3.918 14 N -0.337 5.337 15 N -0.338 5.338 16 C 0.254 3.746 17 C -0.629 4.629 18 H 0.045 0.955 19 C -0.014 4.014 20 N -0.918 5.918 21 Si 1.122 2.878 22 H -0.266 1.266 23 H -0.278 1.278 24 H -0.276 1.276 25 H 0.092 0.908 26 H 0.103 0.897 27 H 0.067 0.933 28 H 0.413 0.587 29 H 0.109 0.891 30 H 0.123 0.877 31 H 0.356 0.644 32 H 0.088 0.912 33 H 0.089 0.911 34 H 0.227 0.773 35 H 0.046 0.954 36 H 0.027 0.973 37 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.395 22.010 -0.200 22.141 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.011 3.989 3 C -0.345 4.345 4 C 0.399 3.601 5 O -0.458 6.458 6 N -0.359 5.359 7 C -0.002 4.002 8 H 0.124 0.876 9 C -0.119 4.119 10 N -0.150 5.150 11 O -0.251 6.251 12 C -0.079 4.079 13 C -0.105 4.105 14 N -0.157 5.157 15 N -0.114 5.114 16 C 0.135 3.865 17 C -0.667 4.667 18 H 0.063 0.937 19 C -0.214 4.214 20 N -0.554 5.554 21 Si 0.942 3.058 22 H -0.191 1.191 23 H -0.204 1.204 24 H -0.201 1.201 25 H 0.110 0.890 26 H 0.121 0.879 27 H 0.086 0.914 28 H 0.251 0.749 29 H 0.127 0.873 30 H 0.141 0.859 31 H 0.172 0.828 32 H 0.106 0.894 33 H 0.107 0.893 34 H 0.243 0.757 35 H 0.063 0.937 36 H 0.045 0.955 37 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 2.706 19.542 -0.832 19.746 hybrid contribution -0.686 1.466 1.073 1.942 sum 2.020 21.008 0.241 21.107 Atomic orbital electron populations 1.20598 0.85749 1.04368 1.04098 1.22006 0.96002 0.86635 0.94267 1.19938 0.93169 0.93126 1.28273 1.17069 0.85081 0.83722 0.74231 1.90690 1.17711 1.84602 1.52827 1.45620 1.10067 1.04470 1.75734 1.22992 0.99773 0.81548 0.95891 0.87564 1.23916 0.98253 0.95146 0.94618 1.68921 1.50307 1.03381 0.92365 1.92256 1.37893 1.68098 1.26843 1.24450 0.88515 0.98475 0.96501 1.24540 0.97791 0.91521 0.96693 1.77107 0.98102 1.14621 1.25851 1.48862 1.03539 1.07348 1.51684 1.19453 0.94755 0.73745 0.98573 1.22310 1.51783 1.01152 0.91419 0.93669 1.27298 0.91903 0.92694 1.09518 1.70916 1.45833 1.38416 1.00213 0.82856 0.77873 0.76075 0.68993 1.19064 1.20375 1.20111 0.88990 0.87893 0.91419 0.74911 0.87252 0.85913 0.82767 0.89380 0.89285 0.75651 0.93671 0.95533 0.92924 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -3.22 9.34 71.24 0.67 -2.55 16 2 C 0.15 5.89 7.01 42.14 0.30 6.19 16 3 C -0.33 -11.29 6.13 -20.15 -0.12 -11.41 16 4 C 0.61 17.84 7.81 86.66 0.68 18.52 16 5 O -0.58 -19.61 14.52 -4.05 -0.06 -19.67 16 6 N -0.71 -14.22 5.08 -441.28 -2.24 -16.46 16 7 C 0.11 1.69 3.42 45.95 0.16 1.85 16 8 H 0.11 1.80 7.61 -2.38 -0.02 1.79 16 9 C 0.01 0.12 7.59 86.49 0.66 0.77 16 10 N -0.48 -6.62 8.43 -182.24 -1.54 -8.16 16 11 O -0.24 -4.89 12.77 -54.01 -0.69 -5.58 16 12 C 0.00 0.01 7.65 72.49 0.55 0.56 16 13 C 0.08 2.64 11.50 85.65 0.99 3.62 16 14 N -0.34 -14.39 12.50 -56.28 -0.70 -15.10 16 15 N -0.34 -15.46 3.56 -336.69 -1.20 -16.66 16 16 C 0.25 12.95 5.09 85.64 0.44 13.39 16 17 C -0.63 -34.76 9.39 25.60 0.24 -34.52 16 18 H 0.04 2.59 7.81 -2.91 -0.02 2.56 16 19 C -0.01 -0.74 5.46 84.65 0.46 -0.28 16 20 N -0.92 -52.88 13.65 21.45 0.29 -52.59 16 21 Si 1.12 48.31 29.90 68.60 2.05 50.36 16 22 H -0.27 -10.62 7.11 99.48 0.71 -9.92 16 23 H -0.28 -11.52 7.11 99.48 0.71 -10.81 16 24 H -0.28 -11.65 7.11 99.48 0.71 -10.94 16 25 H 0.09 2.94 8.14 -2.39 -0.02 2.92 16 26 H 0.10 3.52 6.50 -2.39 -0.02 3.51 16 27 H 0.07 2.58 7.70 -2.39 -0.02 2.57 16 28 H 0.41 6.59 7.28 -92.71 -0.68 5.91 16 29 H 0.11 1.10 7.65 -2.39 -0.02 1.08 16 30 H 0.12 0.63 8.14 -2.39 -0.02 0.61 16 31 H 0.36 3.07 9.09 -89.69 -0.82 2.26 16 32 H 0.09 1.25 8.14 -2.38 -0.02 1.23 16 33 H 0.09 1.92 8.06 -2.39 -0.02 1.90 16 34 H 0.23 4.66 7.50 -2.91 -0.02 4.64 16 35 H 0.05 2.27 7.49 -2.39 -0.02 2.25 16 36 H 0.03 1.44 8.01 -2.38 -0.02 1.42 16 37 H 0.26 14.98 7.22 -92.71 -0.67 14.31 16 Total: -1.00 -71.07 318.47 0.65 -70.42 By element: Atomic # 1 Polarization: 17.56 SS G_CDS: -0.27 Total: 17.29 kcal Atomic # 6 Polarization: -8.86 SS G_CDS: 5.01 Total: -3.85 kcal Atomic # 7 Polarization: -103.57 SS G_CDS: -5.39 Total: -108.96 kcal Atomic # 8 Polarization: -24.50 SS G_CDS: -0.75 Total: -25.25 kcal Atomic # 14 Polarization: 48.31 SS G_CDS: 2.05 Total: 50.36 kcal Total: -71.07 0.65 -70.42 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001579526344.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.737 kcal (2) G-P(sol) polarization free energy of solvation -71.072 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.666 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.651 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.421 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.317 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.74 seconds