Wall clock time and date at job start Fri Apr 10 2020 17:19:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30994 * 1 3 3 C 1.50704 * 120.00464 * 2 1 4 4 O 1.42898 * 109.47152 * 135.00010 * 3 2 1 5 5 N 1.41596 * 113.99950 * 179.97438 * 4 3 2 6 6 C 1.34777 * 120.00056 * 179.97438 * 5 4 3 7 7 O 1.21593 * 119.99953 * 0.02562 * 6 5 4 8 8 N 1.34777 * 119.99726 * 180.27729 * 6 5 4 9 9 C 1.40196 * 119.99786 * 179.72659 * 8 6 5 10 10 C 1.40403 * 125.97362 * 359.72037 * 9 8 6 11 11 C 1.35241 * 107.87032 * 179.83093 * 10 9 8 12 12 C 1.50704 * 126.07402 * 180.16205 * 11 10 9 13 13 N 1.34964 * 107.85500 * 0.42559 * 11 10 9 14 14 C 1.46503 * 125.97580 * 179.71183 * 13 11 10 15 15 C 1.50699 * 109.47232 * 270.00070 * 14 13 11 16 16 H 1.08004 * 119.99852 * 0.02562 * 15 14 13 17 17 C 1.37878 * 120.00303 * 179.97438 * 15 14 13 18 18 N 1.31509 * 120.00064 * 179.97438 * 17 15 14 19 19 Si 1.86800 * 119.99863 * 0.02562 * 17 15 14 20 20 H 1.48503 * 109.47161 * 89.99998 * 19 17 15 21 21 H 1.48501 * 109.47106 * 210.00045 * 19 17 15 22 22 H 1.48498 * 109.47068 * 329.99836 * 19 17 15 23 23 N 1.31207 * 125.97268 * 180.02562 * 9 8 6 24 24 H 1.07998 * 120.00179 * 180.02562 * 1 2 3 25 25 H 1.08006 * 119.99466 * 359.97438 * 1 2 3 26 26 H 1.08005 * 119.99951 * 179.97438 * 2 1 3 27 27 H 1.08997 * 109.46740 * 15.00437 * 3 2 1 28 28 H 1.09003 * 109.47058 * 255.00202 * 3 2 1 29 29 H 0.97000 * 120.00207 * 0.02562 * 5 4 3 30 30 H 0.97000 * 120.00483 * 359.73178 * 8 6 5 31 31 H 1.08001 * 126.06561 * 359.97438 * 10 9 8 32 32 H 1.09000 * 109.46414 * 270.31468 * 12 11 10 33 33 H 1.08994 * 109.47042 * 30.31368 * 12 11 10 34 34 H 1.08993 * 109.47184 * 150.31712 * 12 11 10 35 35 H 1.09001 * 109.47222 * 29.99739 * 14 13 11 36 36 H 1.08997 * 109.47398 * 150.00005 * 14 13 11 37 37 H 0.97000 * 120.00157 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3099 0.0000 0.0000 3 6 2.0636 1.3051 0.0000 4 8 3.1267 1.2412 0.9526 5 7 3.9014 2.4238 1.0313 6 6 4.9361 2.4957 1.8920 7 8 5.2046 1.5448 2.6006 8 7 5.6699 3.6234 1.9708 9 6 6.7426 3.7002 2.8702 10 6 7.1578 2.6855 3.7473 11 6 8.2235 3.1466 4.4406 12 6 8.9939 2.3891 5.4912 13 7 8.4711 4.4077 4.0285 14 6 9.5368 5.2818 4.5251 15 6 9.0264 6.0805 5.6966 16 1 8.0099 5.9498 6.0375 17 6 9.8573 6.9774 6.3340 18 7 9.4116 7.6748 7.3561 19 14 11.6155 7.2030 5.7449 20 1 11.6596 8.2735 4.7166 21 1 12.4772 7.5836 6.8929 22 1 12.1075 5.9312 5.1570 23 7 7.5306 4.7349 3.0433 24 1 -0.5400 -0.9353 0.0004 25 1 -0.5399 0.9354 0.0004 26 1 1.8500 -0.9354 0.0004 27 1 1.3856 2.1160 0.2661 28 1 2.4756 1.4867 -0.9927 29 1 3.6870 3.1826 0.4662 30 1 5.4559 4.3819 1.4053 31 1 6.7075 1.7091 3.8486 32 1 8.5463 2.5674 6.4690 33 1 8.9629 1.3230 5.2664 34 1 10.0294 2.7290 5.4982 35 1 10.3861 4.6759 4.8409 36 1 9.8496 5.9603 3.7315 37 1 9.9961 8.3060 7.8043 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001623388142.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:19:50 Heat of formation + Delta-G solvation = 66.705646 kcal Electronic energy + Delta-G solvation = -20816.380822 eV Core-core repulsion = 17405.377322 eV Total energy + Delta-G solvation = -3411.003501 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 280.132 amu Computer time = 1.40 seconds Orbital eigenvalues (eV) -42.34764 -40.89290 -38.75177 -36.33678 -35.35031 -35.10980 -33.58178 -32.78280 -32.22696 -28.91542 -27.88526 -26.96637 -24.71612 -23.33680 -21.65255 -21.24706 -20.77749 -19.57091 -19.20931 -18.78539 -17.59003 -17.20714 -16.90501 -16.55349 -16.37991 -15.89742 -15.66412 -15.30946 -14.87410 -14.52861 -14.20360 -13.91793 -13.85293 -13.73935 -13.61153 -13.25765 -12.86885 -12.57614 -12.46393 -12.22901 -12.09824 -11.80857 -11.62997 -11.46660 -11.24285 -10.87538 -10.53378 -10.08480 -9.58990 -9.07436 -8.37968 -6.48934 0.17433 0.98051 1.24334 1.37499 1.39760 1.49198 1.60078 1.75086 2.28926 2.30698 2.68234 2.94694 3.58138 3.81792 3.90318 4.08620 4.11513 4.31718 4.40112 4.51790 4.54289 4.70157 4.82203 4.83271 4.94874 5.00383 5.12715 5.19994 5.25948 5.43412 5.60880 5.64093 5.85142 5.90550 6.01592 6.38333 6.54294 6.61409 7.03696 7.14796 7.36900 8.78691 Molecular weight = 280.13amu Principal moments of inertia in cm(-1) A = 0.042807 B = 0.002877 C = 0.002818 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 653.944627 B = 9728.355969 C = 9935.274936 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.176 4.176 3 C 0.054 3.946 4 O -0.147 6.147 5 N -0.591 5.591 6 C 0.730 3.270 7 O -0.590 6.590 8 N -0.622 5.622 9 C 0.297 3.703 10 C -0.299 4.299 11 C 0.092 3.908 12 C -0.085 4.085 13 N -0.342 5.342 14 C 0.241 3.759 15 C -0.549 4.549 16 H 0.024 0.976 17 C 0.020 3.980 18 N -0.938 5.938 19 Si 0.952 3.048 20 H -0.265 1.265 21 H -0.276 1.276 22 H -0.233 1.233 23 N -0.350 5.350 24 H 0.121 0.879 25 H 0.113 0.887 26 H 0.115 0.885 27 H 0.086 0.914 28 H 0.091 0.909 29 H 0.427 0.573 30 H 0.427 0.573 31 H 0.164 0.836 32 H 0.078 0.922 33 H 0.107 0.893 34 H 0.079 0.921 35 H 0.075 0.925 36 H 0.051 0.949 37 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.369 -12.327 -16.989 23.871 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.195 4.195 3 C -0.023 4.023 4 O -0.151 6.151 5 N -0.297 5.297 6 C 0.429 3.571 7 O -0.466 6.466 8 N -0.278 5.278 9 C 0.041 3.959 10 C -0.330 4.330 11 C -0.038 4.038 12 C -0.143 4.143 13 N -0.124 5.124 14 C 0.121 3.879 15 C -0.587 4.587 16 H 0.042 0.958 17 C -0.179 4.179 18 N -0.577 5.577 19 Si 0.773 3.227 20 H -0.190 1.190 21 H -0.201 1.201 22 H -0.156 1.156 23 N -0.180 5.180 24 H 0.140 0.860 25 H 0.131 0.869 26 H 0.133 0.867 27 H 0.104 0.896 28 H 0.109 0.891 29 H 0.271 0.729 30 H 0.265 0.735 31 H 0.181 0.819 32 H 0.096 0.904 33 H 0.125 0.875 34 H 0.098 0.902 35 H 0.093 0.907 36 H 0.069 0.931 37 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -10.771 -11.990 -16.477 23.049 hybrid contribution -0.285 0.615 -0.268 0.729 sum -11.055 -11.376 -16.745 23.066 Atomic orbital electron populations 1.24147 0.94802 1.03951 0.96033 1.22545 0.96150 0.96950 1.03894 1.22359 0.88169 0.98476 0.93247 1.90634 1.44197 1.17580 1.62733 1.45514 1.29427 1.10705 1.44069 1.14998 0.79105 0.82391 0.80580 1.90869 1.71288 1.37900 1.46508 1.40875 1.29195 1.16594 1.41101 1.18787 0.90445 0.93373 0.93251 1.21427 1.02934 1.03459 1.05147 1.21717 0.97606 0.86146 0.98292 1.20513 0.99057 0.99942 0.94754 1.48434 1.24592 1.10883 1.28528 1.19809 0.84235 0.89832 0.94029 1.21259 0.99084 1.23861 1.14543 0.95808 1.25844 1.03995 0.93892 0.94214 1.70036 1.38943 1.26027 1.22667 0.85668 0.77600 0.80783 0.78682 1.19013 1.20090 1.15567 1.77167 1.06035 1.21514 1.13331 0.86044 0.86873 0.86680 0.89629 0.89084 0.72865 0.73507 0.81850 0.90369 0.87455 0.90212 0.90709 0.93144 0.91778 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.32 14.31 67.79 0.97 -0.35 16 2 C -0.18 -2.19 9.89 25.65 0.25 -1.93 16 3 C 0.05 0.68 6.64 71.24 0.47 1.15 16 4 O -0.15 -3.37 11.09 -21.42 -0.24 -3.60 16 5 N -0.59 -12.39 6.39 -184.74 -1.18 -13.57 16 6 C 0.73 22.27 8.68 179.05 1.55 23.83 16 7 O -0.59 -23.42 13.88 13.34 0.19 -23.24 16 8 N -0.62 -18.60 5.46 -321.23 -1.75 -20.35 16 9 C 0.30 11.95 8.11 133.31 1.08 13.03 16 10 C -0.30 -12.40 9.52 22.11 0.21 -12.19 16 11 C 0.09 3.83 6.93 41.39 0.29 4.11 16 12 C -0.08 -2.75 10.11 71.24 0.72 -2.02 16 13 N -0.34 -15.85 3.59 -338.44 -1.22 -17.07 16 14 C 0.24 11.37 5.06 85.63 0.43 11.81 16 15 C -0.55 -31.44 9.94 25.60 0.25 -31.18 16 16 H 0.02 1.58 8.06 -2.91 -0.02 1.56 16 17 C 0.02 1.13 5.47 84.66 0.46 1.59 16 18 N -0.94 -57.11 13.96 21.45 0.30 -56.81 16 19 Si 0.95 40.59 27.47 68.60 1.88 42.47 16 20 H -0.27 -11.03 7.11 99.48 0.71 -10.33 16 21 H -0.28 -11.50 7.11 99.48 0.71 -10.79 16 22 H -0.23 -8.71 6.54 99.48 0.65 -8.06 16 23 N -0.35 -15.85 12.59 -54.43 -0.69 -16.53 16 24 H 0.12 0.75 8.06 -2.91 -0.02 0.73 16 25 H 0.11 0.68 7.90 -2.91 -0.02 0.66 16 26 H 0.12 1.56 8.06 -2.91 -0.02 1.53 16 27 H 0.09 0.77 7.86 -2.39 -0.02 0.75 16 28 H 0.09 0.79 8.14 -2.39 -0.02 0.77 16 29 H 0.43 4.80 8.56 -92.71 -0.79 4.01 16 30 H 0.43 9.23 8.84 -92.71 -0.82 8.41 16 31 H 0.16 6.78 5.91 -2.91 -0.02 6.77 16 32 H 0.08 2.59 8.14 -2.39 -0.02 2.57 16 33 H 0.11 2.76 8.14 -2.39 -0.02 2.74 16 34 H 0.08 2.42 7.07 -2.39 -0.02 2.41 16 35 H 0.08 3.15 6.10 -2.39 -0.01 3.14 16 36 H 0.05 2.32 7.57 -2.39 -0.02 2.30 16 37 H 0.27 15.30 8.31 -92.71 -0.77 14.53 16 Total: -1.00 -80.59 326.54 3.44 -77.15 By element: Atomic # 1 Polarization: 24.26 SS G_CDS: -0.56 Total: 23.70 kcal Atomic # 6 Polarization: 1.14 SS G_CDS: 6.70 Total: 7.84 kcal Atomic # 7 Polarization: -119.79 SS G_CDS: -4.54 Total: -124.33 kcal Atomic # 8 Polarization: -26.79 SS G_CDS: -0.05 Total: -26.84 kcal Atomic # 14 Polarization: 40.59 SS G_CDS: 1.88 Total: 42.47 kcal Total: -80.59 3.44 -77.15 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001623388142.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 143.855 kcal (2) G-P(sol) polarization free energy of solvation -80.589 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 63.266 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.440 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.149 kcal (6) G-S(sol) free energy of system = (1) + (5) 66.706 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.41 seconds