Wall clock time and date at job start Fri Apr 10 2020 17:20:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.35318 * 126.12771 * 2 1 4 4 C 1.39874 * 107.92042 * 180.14776 * 3 2 1 5 5 C 1.50696 * 125.89755 * 179.86306 * 4 3 2 6 6 C 1.52997 * 109.47055 * 124.71180 * 5 4 3 7 7 C 1.50706 * 109.47238 * 179.97438 * 6 5 4 8 8 O 1.21279 * 119.99507 * 0.02562 * 7 6 5 9 9 N 1.34774 * 120.00020 * 180.02562 * 7 6 5 10 10 C 1.46496 * 119.99544 * 180.02562 * 9 7 6 11 11 C 1.50703 * 109.46760 * 180.02562 * 10 9 7 12 12 O 1.21289 * 120.00352 * 359.97438 * 11 10 9 13 13 N 1.34786 * 119.99895 * 179.97438 * 11 10 9 14 14 C 1.37099 * 119.99766 * 179.97438 * 13 11 10 15 15 H 1.08005 * 120.00006 * 0.02562 * 14 13 11 16 16 C 1.38945 * 119.99790 * 180.02562 * 14 13 11 17 17 N 1.31411 * 120.00031 * 359.97438 * 16 14 13 18 18 Si 1.86806 * 120.00154 * 180.02562 * 16 14 13 19 19 H 1.48498 * 109.46651 * 359.97438 * 18 16 14 20 20 H 1.48500 * 109.47141 * 119.99643 * 18 16 14 21 21 H 1.48498 * 109.47071 * 240.00054 * 18 16 14 22 22 N 1.30836 * 108.19917 * 359.59658 * 4 3 2 23 23 N 1.34951 * 126.12509 * 179.70243 * 2 1 3 24 24 H 0.96995 * 126.03699 * 359.97438 * 23 2 1 25 25 H 1.09001 * 109.47284 * 270.27028 * 1 2 3 26 26 H 1.09000 * 109.47023 * 30.26599 * 1 2 3 27 27 H 1.08994 * 109.47256 * 150.26905 * 1 2 3 28 28 H 1.07996 * 126.04121 * 0.02562 * 3 2 1 29 29 H 1.09001 * 109.47328 * 4.71451 * 5 4 3 30 30 H 1.09004 * 109.47043 * 244.71261 * 5 4 3 31 31 H 1.09001 * 109.46832 * 59.99966 * 6 5 4 32 32 H 1.09000 * 109.47611 * 300.00263 * 6 5 4 33 33 H 0.96994 * 119.99756 * 0.02562 * 9 7 6 34 34 H 1.08996 * 109.47366 * 299.99598 * 10 9 7 35 35 H 1.08992 * 109.47635 * 60.00246 * 10 9 7 36 36 H 0.97002 * 119.99849 * 0.02562 * 13 11 10 37 37 H 0.97007 * 119.99885 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3048 1.0930 0.0000 4 6 3.6335 0.6559 -0.0034 5 6 4.8543 1.5395 -0.0075 6 6 5.7524 1.1739 1.1759 7 6 6.9735 2.0571 1.1715 8 8 7.1116 2.8965 0.3071 9 7 7.9121 1.9140 2.1281 10 6 9.0989 2.7729 2.1240 11 6 9.9841 2.4120 3.2889 12 8 9.6558 1.5249 4.0482 13 7 11.1408 3.0749 3.4872 14 6 11.9459 2.7468 4.5473 15 1 11.6535 1.9569 5.2233 16 6 13.1380 3.4306 4.7519 17 7 13.4940 4.3914 3.9291 18 14 14.2354 2.9832 6.1959 19 1 13.6137 1.8759 6.9656 20 1 15.5643 2.5517 5.6927 21 1 14.4003 4.1667 7.0776 22 7 3.6334 -0.6524 0.0033 23 7 2.3026 -1.0900 0.0057 24 1 2.0055 -2.0133 0.0108 25 1 -0.3634 0.0048 1.0277 26 1 -0.3633 0.8876 -0.5180 27 1 -0.3633 -0.8923 -0.5096 28 1 1.9741 2.1211 0.0004 29 1 4.5484 2.5823 0.0770 30 1 5.4034 1.3962 -0.9382 31 1 6.0583 0.1311 1.0914 32 1 5.2033 1.3171 2.1066 33 1 7.8018 1.2424 2.8191 34 1 9.6477 2.6300 1.1932 35 1 8.7931 3.8156 2.2090 36 1 11.4032 3.7846 2.8802 37 1 14.3265 4.8685 4.0718 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001634922243.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:20:25 Heat of formation + Delta-G solvation = -19.389909 kcal Electronic energy + Delta-G solvation = -20231.607237 eV Core-core repulsion = 16816.870353 eV Total energy + Delta-G solvation = -3414.736884 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 280.132 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -41.47271 -39.53834 -38.10880 -34.59095 -34.29804 -33.62230 -32.15471 -31.37182 -30.59831 -27.85621 -27.27381 -25.20427 -23.95917 -20.85325 -20.16513 -19.71471 -19.43405 -18.08695 -17.64800 -16.99608 -15.75169 -15.58694 -15.34523 -15.18609 -14.49973 -14.45444 -14.07762 -13.98365 -13.75909 -13.43324 -13.35577 -12.98346 -12.88876 -12.21454 -12.16871 -12.02064 -11.86847 -11.62111 -11.30454 -11.13004 -10.65124 -10.39897 -10.31421 -9.72673 -9.63586 -9.41632 -8.84290 -8.74423 -8.61411 -8.08780 -6.50310 -3.92225 1.61206 2.52839 2.61472 2.89323 3.11332 3.23092 3.29429 3.46414 3.75819 4.12625 4.31605 4.47394 4.69118 4.90208 4.96349 4.98731 5.02906 5.16603 5.18899 5.37543 5.48124 5.50563 5.62736 5.79040 5.95517 5.98123 6.02121 6.03512 6.09956 6.44478 6.73454 7.03894 7.47435 7.48358 7.85989 7.93839 8.45777 8.51222 9.06039 9.40897 9.88870 10.66660 Molecular weight = 280.13amu Principal moments of inertia in cm(-1) A = 0.052301 B = 0.002323 C = 0.002262 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 535.235946 B =12052.423390 C =12377.070404 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.093 4.093 2 C 0.082 3.918 3 C -0.267 4.267 4 C 0.084 3.916 5 C -0.023 4.023 6 C -0.133 4.133 7 C 0.512 3.488 8 O -0.552 6.552 9 N -0.708 5.708 10 C 0.108 3.892 11 C 0.428 3.572 12 O -0.597 6.597 13 N -0.550 5.550 14 C -0.304 4.304 15 H 0.106 0.894 16 C 0.025 3.975 17 N -0.895 5.895 18 Si 0.933 3.067 19 H -0.267 1.267 20 H -0.280 1.280 21 H -0.280 1.280 22 N -0.291 5.291 23 N -0.478 5.478 24 H 0.436 0.564 25 H 0.080 0.920 26 H 0.086 0.914 27 H 0.069 0.931 28 H 0.148 0.852 29 H 0.092 0.908 30 H 0.089 0.911 31 H 0.099 0.901 32 H 0.094 0.906 33 H 0.411 0.589 34 H 0.083 0.917 35 H 0.083 0.917 36 H 0.396 0.604 37 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.747 -6.340 -8.027 24.941 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.047 4.047 3 C -0.296 4.296 4 C -0.082 4.082 5 C -0.062 4.062 6 C -0.173 4.173 7 C 0.298 3.702 8 O -0.431 6.431 9 N -0.362 5.362 10 C -0.019 4.019 11 C 0.214 3.786 12 O -0.484 6.484 13 N -0.185 5.185 14 C -0.434 4.434 15 H 0.124 0.876 16 C -0.178 4.178 17 N -0.535 5.535 18 Si 0.759 3.241 19 H -0.191 1.191 20 H -0.206 1.206 21 H -0.206 1.206 22 N -0.114 5.114 23 N -0.187 5.187 24 H 0.279 0.721 25 H 0.099 0.901 26 H 0.105 0.895 27 H 0.088 0.912 28 H 0.165 0.835 29 H 0.110 0.890 30 H 0.108 0.892 31 H 0.117 0.883 32 H 0.112 0.888 33 H 0.249 0.751 34 H 0.101 0.899 35 H 0.102 0.898 36 H 0.230 0.770 37 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -21.937 -7.227 -8.113 24.480 hybrid contribution 0.100 0.180 0.683 0.714 sum -21.837 -7.046 -7.430 24.119 Atomic orbital electron populations 1.20456 0.87296 1.03898 1.03464 1.21129 0.94583 0.87872 1.01093 1.21206 0.91642 0.99267 1.17489 1.22365 0.95807 0.91543 0.98530 1.19768 0.90059 0.97387 0.99017 1.21572 0.94329 1.00828 1.00593 1.20572 0.84212 0.84273 0.81126 1.90682 1.78620 1.36379 1.37386 1.45744 1.20913 1.39042 1.30520 1.20946 0.86873 0.95192 0.98937 1.19784 0.84168 0.86410 0.88244 1.90496 1.74300 1.34438 1.49155 1.41813 1.17410 1.32597 1.26680 1.19782 1.00166 1.18443 1.04966 0.87632 1.25331 0.97811 0.95770 0.98899 1.69626 1.24330 1.22366 1.37174 0.85754 0.79370 0.78549 0.80390 1.19143 1.20623 1.20629 1.77327 0.96009 1.12663 1.25382 1.46309 1.04162 1.08151 1.60060 0.72061 0.90101 0.89510 0.91176 0.83451 0.88988 0.89234 0.88291 0.88772 0.75094 0.89868 0.89849 0.77027 0.91656 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.37 10.43 36.01 0.38 0.00 16 2 C 0.08 0.66 7.21 -82.26 -0.59 0.06 16 3 C -0.27 -2.58 10.64 -40.01 -0.43 -3.01 16 4 C 0.08 0.97 6.49 -82.41 -0.53 0.43 16 5 C -0.02 -0.26 5.08 -27.89 -0.14 -0.40 16 6 C -0.13 -1.59 5.66 -27.88 -0.16 -1.74 16 7 C 0.51 7.96 7.83 -10.98 -0.09 7.88 16 8 O -0.55 -10.12 15.98 5.56 0.09 -10.03 16 9 N -0.71 -11.88 5.53 -61.48 -0.34 -12.22 16 10 C 0.11 2.02 6.15 -5.19 -0.03 1.99 16 11 C 0.43 9.93 7.85 -10.98 -0.09 9.84 16 12 O -0.60 -15.45 15.24 5.55 0.08 -15.37 16 13 N -0.55 -13.77 5.29 -10.96 -0.06 -13.83 16 14 C -0.30 -8.33 9.68 -14.93 -0.14 -8.47 16 15 H 0.11 3.02 7.16 -52.48 -0.38 2.64 16 16 C 0.02 0.65 5.50 -17.47 -0.10 0.55 16 17 N -0.89 -24.04 13.05 55.50 0.72 -23.31 16 18 Si 0.93 20.67 29.55 -169.99 -5.02 15.64 16 19 H -0.27 -5.91 7.11 56.52 0.40 -5.51 16 20 H -0.28 -6.12 7.11 56.52 0.40 -5.72 16 21 H -0.28 -6.12 7.11 56.52 0.40 -5.72 16 22 N -0.29 -3.50 12.67 33.67 0.43 -3.08 16 23 N -0.48 -4.22 7.36 33.48 0.25 -3.97 16 24 H 0.44 2.47 8.96 -182.61 -1.64 0.83 16 25 H 0.08 0.26 8.14 -51.93 -0.42 -0.16 16 26 H 0.09 0.28 8.14 -51.93 -0.42 -0.15 16 27 H 0.07 0.18 8.14 -51.93 -0.42 -0.24 16 28 H 0.15 1.16 8.06 -52.49 -0.42 0.74 16 29 H 0.09 1.00 8.08 -51.93 -0.42 0.58 16 30 H 0.09 1.08 8.10 -51.93 -0.42 0.66 16 31 H 0.10 1.15 8.14 -51.93 -0.42 0.73 16 32 H 0.09 1.01 8.14 -51.93 -0.42 0.59 16 33 H 0.41 6.80 7.44 -40.82 -0.30 6.50 16 34 H 0.08 1.50 8.14 -51.93 -0.42 1.07 16 35 H 0.08 1.49 8.14 -51.93 -0.42 1.07 16 36 H 0.40 9.52 7.90 -40.82 -0.32 9.20 16 37 H 0.27 6.92 8.31 -40.82 -0.34 6.58 16 LS Contribution 329.50 15.07 4.97 4.97 Total: -1.00 -33.57 329.50 -6.80 -40.37 By element: Atomic # 1 Polarization: 19.69 SS G_CDS: -6.00 Total: 13.70 kcal Atomic # 6 Polarization: 9.05 SS G_CDS: -1.92 Total: 7.13 kcal Atomic # 7 Polarization: -57.41 SS G_CDS: 1.00 Total: -56.42 kcal Atomic # 8 Polarization: -25.57 SS G_CDS: 0.17 Total: -25.39 kcal Atomic # 14 Polarization: 20.67 SS G_CDS: -5.02 Total: 15.64 kcal Total LS contribution 4.97 Total: 4.97 kcal Total: -33.57 -6.80 -40.37 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001634922243.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.984 kcal (2) G-P(sol) polarization free energy of solvation -33.571 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.587 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.803 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.374 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.390 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds